HEADER FAD-BINDING PROTEIN 17-APR-06 2GPJ TITLE CRYSTAL STRUCTURE OF A SIDEROPHORE-INTERACTING PROTEIN (SPUTCN32_0076) TITLE 2 FROM SHEWANELLA PUTREFACIENS CN-32 AT 2.20 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIDEROPHORE-INTERACTING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA PUTREFACIENS; SOURCE 3 ORGANISM_TAXID: 319224; SOURCE 4 STRAIN: CN-32; SOURCE 5 GENE: ZP_00813641.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS SIDEROPHORE-INTERACTING PROTEIN, STRUCTURAL GENOMICS, JOINT CENTER KEYWDS 2 FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 3 FAD-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 25-JAN-23 2GPJ 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 2GPJ 1 VERSN REVDAT 3 28-JUL-10 2GPJ 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 2GPJ 1 VERSN REVDAT 1 13-JUN-06 2GPJ 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF SIDEROPHORE-INTERACTING PROTEIN JRNL TITL 2 (ZP_00813641.1) FROM SHEWANELLA PUTREFACIENS CN-32 AT 2.20 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 18093 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 923 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1229 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2930 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.3840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1910 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 112 REMARK 3 SOLVENT ATOMS : 95 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 43.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.18000 REMARK 3 B22 (A**2) : -0.18000 REMARK 3 B33 (A**2) : 0.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.197 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.183 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.144 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.732 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2091 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1885 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2838 ; 1.233 ; 2.002 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4381 ; 0.624 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 247 ; 5.840 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 92 ;31.657 ;24.457 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 318 ;14.204 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;16.343 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 302 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2278 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 388 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 395 ; 0.221 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1847 ; 0.217 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 937 ; 0.191 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1123 ; 0.092 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 92 ; 0.148 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.127 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.176 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 33 ; 0.282 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.181 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1291 ; 3.040 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 494 ; 0.813 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2006 ; 4.163 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 956 ; 7.289 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 832 ; 8.873 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 248 REMARK 3 ORIGIN FOR THE GROUP (A): 0.8150 27.8200 4.7190 REMARK 3 T TENSOR REMARK 3 T11: -0.2144 T22: -0.1902 REMARK 3 T33: -0.0154 T12: -0.0036 REMARK 3 T13: -0.0268 T23: 0.0153 REMARK 3 L TENSOR REMARK 3 L11: 1.6482 L22: 1.6529 REMARK 3 L33: 2.0833 L12: -0.0627 REMARK 3 L13: -0.0968 L23: 0.1237 REMARK 3 S TENSOR REMARK 3 S11: 0.0502 S12: -0.1897 S13: -0.0615 REMARK 3 S21: 0.0327 S22: -0.0804 S23: 0.1868 REMARK 3 S31: -0.0171 S32: -0.0385 S33: 0.0303 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1). HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2). ACETATE, CHLORIDE, AND CALCIUM IONS FROM REMARK 3 THE CRYSTALLIZATION SOLUTION WERE MODELED INTO THE STRUCTURE. 3) REMARK 3 . AN ACETATE AND A CA ION WERE TENTATIVELY MODELED INTO DENSITY REMARK 3 NEAR HIS 213. 4). SEVERAL MOLECULES OF ETHYLENE GLYCOL, USED AS REMARK 3 A CRYOPROTECTANT, WERE MODELED INTO THE STRUCTURE. 5). A MET- REMARK 3 INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION REMARK 3 DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE REMARK 3 MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED REMARK 3 SCATTERING POWER DUE TO PARTIAL SE-MET INCORPORATION. 6). A REMARK 3 FLAVIN ADENINE DINUCLEOTIDE MOLECULE WAS OBSERVED IN THE ACTIVE REMARK 3 SITE OF THE PROTEIN. 7). UNEXPLAININED ELECTRON DENSITIES ALONG REMARK 3 CRYSTALLOGRAPHIC SYMMETRY AXES WERE NOT MODELED. 8). ATOM RECORD REMARK 3 CONTAINS RESIDUAL B FACTORS ONLY REMARK 4 REMARK 4 2GPJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000037397. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979170 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18135 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 28.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.12100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.1300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.76300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.02M CACL2, 30.0% MPD, 0.1M ACETATE, REMARK 280 PH 4.6, VAPOR DIFFUSION, SITTING DROP, NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.75500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 50.27000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.27000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 16.87750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.27000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 50.27000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 50.63250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 50.27000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.27000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 16.87750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 50.27000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.27000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 50.63250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 33.75500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 MSE A 2 REMARK 465 ASN A 3 REMARK 465 LYS A 4 REMARK 465 ALA A 249 REMARK 465 SER A 250 REMARK 465 VAL A 251 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 54 NE CZ NH1 NH2 REMARK 470 GLU A 190 CG CD OE1 OE2 REMARK 470 HIS A 213 ND1 CD2 CE1 NE2 REMARK 470 LYS A 217 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 49 C - N - CA ANGL. DEV. = 12.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 41 -12.21 85.84 REMARK 500 PRO A 49 -46.71 -22.78 REMARK 500 GLN A 50 144.29 65.74 REMARK 500 THR A 79 82.77 66.64 REMARK 500 ASP A 119 -165.29 -105.62 REMARK 500 CYS A 197 -165.17 -173.85 REMARK 500 PHE A 220 85.91 -150.71 REMARK 500 ASN A 247 50.41 -100.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 253 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 208 NE2 REMARK 620 2 ACY A 514 O 117.9 REMARK 620 3 ACY A 514 OXT 92.3 43.2 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 252 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 253 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 254 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 513 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 514 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 361165 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE: REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV REMARK 999 PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE REMARK 999 TARGET SEQUENCE. DBREF 2GPJ A 1 251 GB 77814381 ZP_00813641 1 251 SEQADV 2GPJ GLY A 0 GB 77814381 EXPRESSION TAG SEQADV 2GPJ MSE A 1 GB 77814381 MET 1 MODIFIED RESIDUE SEQADV 2GPJ MSE A 2 GB 77814381 MET 2 MODIFIED RESIDUE SEQADV 2GPJ MSE A 22 GB 77814381 MET 22 MODIFIED RESIDUE SEQADV 2GPJ MSE A 57 GB 77814381 MET 57 MODIFIED RESIDUE SEQADV 2GPJ MSE A 120 GB 77814381 MET 120 MODIFIED RESIDUE SEQADV 2GPJ MSE A 202 GB 77814381 MET 202 MODIFIED RESIDUE SEQRES 1 A 252 GLY MSE MSE ASN LYS PRO ALA PRO ARG GLU LEU GLU VAL SEQRES 2 A 252 ILE ARG SER THR TYR ILE THR PRO HIS MSE LEU ARG ILE SEQRES 3 A 252 THR LEU GLY GLY ALA GLY LEU ALA GLY PHE PRO ALA ASP SEQRES 4 A 252 GLN GLU SER ALA TYR ILE LYS LEU LEU PHE PRO GLN ALA SEQRES 5 A 252 GLY GLU ARG PRO LEU MSE ARG THR TYR THR ILE ARG GLN SEQRES 6 A 252 GLN ARG ASP ASP GLU ILE ASP VAL ASP PHE VAL LEU HIS SEQRES 7 A 252 ASP THR ASP GLY PRO ALA SER SER TRP ALA LYS THR ALA SEQRES 8 A 252 GLN VAL GLY GLU LEU ILE GLN ILE GLY GLY PRO GLY LEU SEQRES 9 A 252 LYS LYS LEU ILE ASN PHE GLU ALA ASP TRP PHE LEU LEU SEQRES 10 A 252 ALA GLY ASP MSE THR ALA LEU PRO ALA ILE SER VAL ASN SEQRES 11 A 252 LEU ALA LYS LEU PRO ASN ASN ALA VAL GLY TYR ALA VAL SEQRES 12 A 252 ILE GLU VAL LEU SER GLU ALA ASP ILE GLN PRO LEU VAL SEQRES 13 A 252 HIS PRO GLU HIS VAL GLU LEU HIS TRP VAL ILE ASN PRO SEQRES 14 A 252 GLU ALA ASP PRO GLU GLY ARG PRO LEU VAL GLU ARG ILE SEQRES 15 A 252 ALA GLN LEU PRO TRP LEU ALA GLY GLU PRO ALA VAL TRP SEQRES 16 A 252 ILE ALA CYS GLU PHE ASN SER MSE ARG ALA LEU ARG ARG SEQRES 17 A 252 HIS PHE LYS GLN ALA HIS ALA LEU PRO LYS SER HIS PHE SEQRES 18 A 252 TYR THR SER SER TYR TRP LYS ILE GLY CYS ASN GLU GLY SEQRES 19 A 252 GLU HIS LYS LEU VAL LYS GLN GLU ASP GLU GLN LEU GLU SEQRES 20 A 252 ASN GLY ALA SER VAL MODRES 2GPJ MSE A 22 MET SELENOMETHIONINE MODRES 2GPJ MSE A 57 MET SELENOMETHIONINE MODRES 2GPJ MSE A 120 MET SELENOMETHIONINE MODRES 2GPJ MSE A 202 MET SELENOMETHIONINE HET MSE A 22 8 HET MSE A 57 8 HET MSE A 120 8 HET MSE A 202 8 HET CA A 252 1 HET CA A 253 1 HET CL A 254 1 HET FAD A 500 53 HET EDO A 501 4 HET EDO A 502 4 HET EDO A 503 4 HET EDO A 504 4 HET EDO A 505 4 HET EDO A 506 4 HET EDO A 507 4 HET EDO A 508 4 HET ACY A 509 4 HET ACY A 510 4 HET ACY A 511 4 HET ACY A 512 4 HET ACY A 513 4 HET ACY A 514 4 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM ACY ACETIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 CA 2(CA 2+) FORMUL 4 CL CL 1- FORMUL 5 FAD C27 H33 N9 O15 P2 FORMUL 6 EDO 8(C2 H6 O2) FORMUL 14 ACY 6(C2 H4 O2) FORMUL 20 HOH *95(H2 O) HELIX 1 1 ALA A 30 ALA A 33 5 4 HELIX 2 2 GLY A 81 ALA A 90 1 10 HELIX 3 3 ALA A 122 LEU A 133 1 12 HELIX 4 4 SER A 147 ILE A 151 5 5 HELIX 5 5 GLY A 174 ALA A 182 1 9 HELIX 6 6 PHE A 199 HIS A 213 1 15 HELIX 7 7 PRO A 216 SER A 218 5 3 HELIX 8 8 ASN A 231 ASN A 247 1 17 SHEET 1 A 7 LEU A 56 THR A 61 0 SHEET 2 A 7 TYR A 43 PHE A 48 -1 N LEU A 46 O ARG A 58 SHEET 3 A 7 LEU A 95 GLY A 102 -1 O GLY A 102 N TYR A 43 SHEET 4 A 7 ARG A 8 THR A 19 -1 N LEU A 10 O ILE A 96 SHEET 5 A 7 MSE A 22 GLY A 28 -1 O THR A 26 N ILE A 13 SHEET 6 A 7 GLU A 69 VAL A 75 -1 O PHE A 74 N LEU A 23 SHEET 7 A 7 GLN A 64 ARG A 66 -1 N GLN A 64 O ASP A 71 SHEET 1 B 5 HIS A 159 ILE A 166 0 SHEET 2 B 5 VAL A 138 VAL A 145 1 N ALA A 141 O HIS A 163 SHEET 3 B 5 TRP A 113 ASP A 119 1 N LEU A 116 O VAL A 142 SHEET 4 B 5 PRO A 191 GLU A 198 1 O TRP A 194 N LEU A 115 SHEET 5 B 5 PHE A 220 TRP A 226 1 O TYR A 221 N VAL A 193 LINK C HIS A 21 N MSE A 22 1555 1555 1.32 LINK C MSE A 22 N LEU A 23 1555 1555 1.33 LINK C LEU A 56 N MSE A 57 1555 1555 1.32 LINK C MSE A 57 N ARG A 58 1555 1555 1.32 LINK C ASP A 119 N MSE A 120 1555 1555 1.32 LINK C MSE A 120 N THR A 121 1555 1555 1.33 LINK C SER A 201 N MSE A 202 1555 1555 1.33 LINK C MSE A 202 N ARG A 203 1555 1555 1.34 LINK NE2 HIS A 208 CA CA A 253 1555 1555 2.33 LINK CA CA A 253 O ACY A 514 1555 1555 3.12 LINK CA CA A 253 OXT ACY A 514 1555 1555 2.73 CISPEP 1 GLY A 100 PRO A 101 0 2.24 SITE 1 AC1 1 HIS A 159 SITE 1 AC2 3 HIS A 208 HIS A 213 ACY A 514 SITE 1 AC3 2 ARG A 206 LYS A 210 SITE 1 AC4 31 ARG A 58 THR A 59 TYR A 60 THR A 61 SITE 2 AC4 31 ASP A 73 VAL A 75 HIS A 77 THR A 79 SITE 3 AC4 31 GLY A 81 PRO A 82 ALA A 83 SER A 84 SITE 4 AC4 31 THR A 121 PRO A 124 TYR A 225 TRP A 226 SITE 5 AC4 31 LYS A 227 GLY A 229 CYS A 230 ASN A 231 SITE 6 AC4 31 GLU A 232 EDO A 505 ACY A 509 ACY A 510 SITE 7 AC4 31 HOH A 516 HOH A 517 HOH A 518 HOH A 543 SITE 8 AC4 31 HOH A 549 HOH A 552 HOH A 579 SITE 1 AC5 1 ASP A 38 SITE 1 AC6 7 MSE A 22 ARG A 24 ARG A 63 ASP A 73 SITE 2 AC6 7 SER A 127 GLN A 152 LEU A 154 SITE 1 AC7 3 VAL A 155 HIS A 156 GLU A 158 SITE 1 AC8 4 LEU A 56 MSE A 57 ARG A 58 HOH A 555 SITE 1 AC9 5 HIS A 77 ASP A 78 PRO A 168 ALA A 170 SITE 2 AC9 5 FAD A 500 SITE 1 BC1 4 GLU A 110 ASN A 200 LYS A 227 ILE A 228 SITE 1 BC2 4 ASN A 108 GLU A 110 LYS A 227 CYS A 230 SITE 1 BC3 4 LEU A 47 PRO A 49 LEU A 95 GLN A 97 SITE 1 BC4 4 ASP A 119 MSE A 120 THR A 121 FAD A 500 SITE 1 BC5 10 LYS A 45 GLU A 53 THR A 59 GLU A 232 SITE 2 BC5 10 HIS A 235 LYS A 236 LYS A 239 FAD A 500 SITE 3 BC5 10 ACY A 512 HOH A 516 SITE 1 BC6 6 SER A 147 GLU A 148 ALA A 149 ARG A 180 SITE 2 BC6 6 GLN A 183 LEU A 184 SITE 1 BC7 5 GLU A 53 LYS A 236 GLN A 240 GLU A 243 SITE 2 BC7 5 ACY A 510 SITE 1 BC8 3 ASP A 112 VAL A 138 ALA A 188 SITE 1 BC9 4 ILE A 181 LEU A 184 HIS A 208 CA A 253 CRYST1 100.540 100.540 67.510 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009950 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009950 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014810 0.00000