HEADER HYDROLASE 20-APR-06 2GQC TITLE SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF RHOMBOID INTRAMEMBRANE TITLE 2 PROTEASE FROM P. AERUGINOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHOMBOID INTRAMEMBRANE PROTEASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 EC: 3.4.21.105; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: PAO1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET 15B KEYWDS ALPHA-BETA DOMAIN, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.DUTTA,A.DEL RIO,J.CHAVEZ,I.UBARRETXENA-BELANDIA,R.GHOSE REVDAT 3 13-JUL-11 2GQC 1 VERSN REVDAT 2 24-FEB-09 2GQC 1 VERSN REVDAT 1 06-MAR-07 2GQC 0 JRNL AUTH A.DEL RIO,K.DUTTA,J.CHAVEZ,I.UBARRETXENA-BELANDIA,R.GHOSE JRNL TITL SOLUTION STRUCTURE AND DYNAMICS OF THE N-TERMINAL CYTOSOLIC JRNL TITL 2 DOMAIN OF RHOMBOID INTRAMEMBRANE PROTEASE FROM PSEUDOMONAS JRNL TITL 3 AERUGINOSA: INSIGHTS INTO A FUNCTIONAL ROLE IN INTRAMEMBRANE JRNL TITL 4 PROTEOLYSIS. JRNL REF J.MOL.BIOL. V. 365 109 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17059825 JRNL DOI 10.1016/J.JMB.2006.09.047 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE, REMARK 3 JIANG,KUSZEWSKI,NILGES,PANNU,READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GQC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-APR-06. REMARK 100 THE RCSB ID CODE IS RCSB037424. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50 MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM, U-15N,13C; 20 MM BIS-TRIS, REMARK 210 50 MM NACL PH 6.5 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C- REMARK 210 SEPARATED_NOESY; HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 700 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRVIEW 5.2.2, ARIA 2.0 REMARK 210 METHOD USED : SIMULATED ANNEALING TORSIONAL REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D AND 3D REMARK 210 HETERONUCLEAR TECHNIQUES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB3 LEU A 11 HG3 GLN A 38 1.13 REMARK 500 HG3 GLU A 60 HB THR A 66 1.35 REMARK 500 HB VAL A 4 HG2 PRO A 43 1.41 REMARK 500 HA LEU A 11 HD23 LEU A 15 1.41 REMARK 500 HB2 PRO A 43 H ASP A 44 1.47 REMARK 500 HE ARG A 57 HE1 TYR A 58 1.49 REMARK 500 HG2 GLN A 5 HG12 VAL A 39 1.50 REMARK 500 HD22 LEU A 7 H LYS A 8 1.52 REMARK 500 HB2 PRO A 10 HG21 VAL A 13 1.52 REMARK 500 HG2 ARG A 56 HG2 ARG A 57 1.53 REMARK 500 H ASN A 26 H VAL A 27 1.55 REMARK 500 HD1 TYR A 55 HG2 PRO A 59 1.55 REMARK 500 HD1 PHE A 9 HB2 GLN A 38 1.57 REMARK 500 HA GLN A 50 HD13 LEU A 54 1.57 REMARK 500 HA ARG A 23 HB VAL A 27 1.58 REMARK 500 HZ PHE A 9 HG22 VAL A 31 1.59 REMARK 500 HA PRO A 43 HD22 LEU A 47 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 6 -30.52 -146.41 REMARK 500 1 PRO A 10 96.51 -28.04 REMARK 500 1 ASN A 26 -7.00 172.30 REMARK 500 1 VAL A 27 64.44 32.09 REMARK 500 1 SER A 35 -38.02 69.89 REMARK 500 1 PRO A 43 -142.34 -95.02 REMARK 500 1 ASP A 44 -68.86 -142.44 REMARK 500 1 GLU A 45 -55.13 -171.17 REMARK 500 1 ARG A 57 -23.50 -154.16 REMARK 500 1 TYR A 58 -72.96 -112.42 REMARK 500 1 PRO A 63 -6.51 -48.93 REMARK 500 1 ALA A 65 -85.28 -152.72 REMARK 500 1 LEU A 67 115.23 171.22 REMARK 500 2 ALA A 3 74.89 -154.41 REMARK 500 2 VAL A 6 -26.77 -147.31 REMARK 500 2 PRO A 10 98.42 -25.65 REMARK 500 2 ASN A 26 15.83 152.11 REMARK 500 2 VAL A 27 68.73 31.05 REMARK 500 2 SER A 35 -1.01 67.63 REMARK 500 2 VAL A 42 27.72 -145.47 REMARK 500 2 PRO A 43 -133.74 -117.20 REMARK 500 2 ASP A 44 -84.26 -154.18 REMARK 500 2 GLU A 45 -71.76 -138.61 REMARK 500 2 ARG A 57 -32.83 -150.19 REMARK 500 2 TYR A 58 -71.18 -109.68 REMARK 500 2 PRO A 63 -18.91 -36.06 REMARK 500 2 GLN A 64 -72.27 -58.17 REMARK 500 2 ALA A 65 -71.16 -156.49 REMARK 500 2 LEU A 67 94.89 -57.37 REMARK 500 3 VAL A 6 -36.31 -139.74 REMARK 500 3 PRO A 10 98.60 -24.25 REMARK 500 3 LEU A 15 -7.53 -59.83 REMARK 500 3 ASN A 26 17.20 173.03 REMARK 500 3 VAL A 27 63.99 30.89 REMARK 500 3 PRO A 43 -127.54 -112.18 REMARK 500 3 ASP A 44 -83.12 -158.23 REMARK 500 3 GLU A 45 -50.25 -163.60 REMARK 500 3 ARG A 57 -26.83 -148.20 REMARK 500 3 TYR A 58 -75.13 -107.12 REMARK 500 3 PRO A 63 51.88 -58.45 REMARK 500 3 GLN A 64 -65.14 -135.01 REMARK 500 3 ALA A 65 -81.55 -143.67 REMARK 500 3 LEU A 67 108.67 171.08 REMARK 500 4 VAL A 6 -36.32 -138.03 REMARK 500 4 PRO A 10 96.36 -22.91 REMARK 500 4 ASN A 26 5.83 169.60 REMARK 500 4 VAL A 27 64.14 31.00 REMARK 500 4 VAL A 42 22.60 -148.23 REMARK 500 4 PRO A 43 -138.11 -97.05 REMARK 500 4 ASP A 44 -86.18 -142.22 REMARK 500 REMARK 500 THIS ENTRY HAS 290 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2GQC A 1 70 GB 9949195 AAG06474 1 70 SEQRES 1 A 70 MET SER ALA VAL GLN VAL LEU LYS PHE PRO LEU SER VAL SEQRES 2 A 70 ASP LEU ALA GLY PHE VAL GLY LEU LEU ARG ARG LEU ASN SEQRES 3 A 70 VAL PRO HIS ARG VAL SER GLU GLU SER GLY GLN GLN VAL SEQRES 4 A 70 LEU TRP VAL PRO ASP GLU ARG LEU ALA GLU GLN VAL ARG SEQRES 5 A 70 GLU LEU TYR ARG ARG TYR PRO GLU GLY ASP PRO GLN ALA SEQRES 6 A 70 THR LEU GLU ALA ALA HELIX 1 1 ASP A 14 ALA A 16 5 3 HELIX 2 2 GLY A 17 ARG A 24 1 8 HELIX 3 3 ARG A 46 ARG A 56 1 11 SHEET 1 A 3 GLN A 5 PHE A 9 0 SHEET 2 A 3 GLN A 37 TRP A 41 -1 O GLN A 38 N PHE A 9 SHEET 3 A 3 ARG A 30 GLU A 34 -1 N SER A 32 O VAL A 39 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1