HEADER OXIDOREDUCTASE 22-APR-06 2GR2 TITLE CRYSTAL STRUCTURE OF FERREDOXIN REDUCTASE, BPHA4 (OXIDIZED FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERREDOXIN REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FERREDOXIN REDUCTASE BPHA4; COMPND 5 EC: 1.18.1.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SP. KKS102; SOURCE 3 ORGANISM_TAXID: 307; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FLAVOPROTEIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.SENDA,M.SENDA REVDAT 4 13-MAR-24 2GR2 1 REMARK REVDAT 3 13-JUL-11 2GR2 1 VERSN REVDAT 2 24-FEB-09 2GR2 1 VERSN REVDAT 1 22-MAY-07 2GR2 0 JRNL AUTH M.SENDA,S.KISHIGAMI,S.KIMURA,T.ISHIDA,M.FUKUDA,T.SENDA JRNL TITL A FERREDOXIN REDUCTASE BPHA4 USES A BUTTERFLY MOTION OF FAD JRNL TITL 2 TO REGULATE AFFINITY FOR FERREDOXIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 40127 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2129 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2712 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.28 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE SET COUNT : 140 REMARK 3 BIN FREE R VALUE : 0.3400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2977 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 89 REMARK 3 SOLVENT ATOMS : 233 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.59000 REMARK 3 B22 (A**2) : -0.59000 REMARK 3 B33 (A**2) : 0.89000 REMARK 3 B12 (A**2) : -0.30000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.132 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.129 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.088 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.483 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3151 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4312 ; 1.569 ; 2.009 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 408 ; 5.691 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 125 ;29.913 ;22.560 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 466 ;12.111 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;18.333 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 507 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2391 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1400 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2157 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 221 ; 0.115 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 40 ; 0.200 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.275 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2072 ; 0.888 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3211 ; 1.298 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1238 ; 2.272 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1097 ; 3.530 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 111 REMARK 3 RESIDUE RANGE : A 238 A 317 REMARK 3 ORIGIN FOR THE GROUP (A): 53.8200 12.1770 12.0360 REMARK 3 T TENSOR REMARK 3 T11: -0.0929 T22: -0.1372 REMARK 3 T33: -0.0833 T12: 0.0014 REMARK 3 T13: 0.0245 T23: -0.0187 REMARK 3 L TENSOR REMARK 3 L11: 0.9084 L22: 1.4127 REMARK 3 L33: 0.8621 L12: -0.4267 REMARK 3 L13: 0.2288 L23: 0.5442 REMARK 3 S TENSOR REMARK 3 S11: -0.0394 S12: -0.0775 S13: 0.0052 REMARK 3 S21: 0.1022 S22: -0.0268 S23: 0.1336 REMARK 3 S31: 0.0468 S32: -0.0649 S33: 0.0662 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 112 A 237 REMARK 3 ORIGIN FOR THE GROUP (A): 81.3470 20.7760 4.9310 REMARK 3 T TENSOR REMARK 3 T11: -0.0851 T22: -0.0011 REMARK 3 T33: -0.0471 T12: -0.0518 REMARK 3 T13: 0.0009 T23: -0.0085 REMARK 3 L TENSOR REMARK 3 L11: 0.8047 L22: 0.8266 REMARK 3 L33: 1.0621 L12: 0.2167 REMARK 3 L13: -0.1300 L23: -0.3183 REMARK 3 S TENSOR REMARK 3 S11: -0.0958 S12: 0.1452 S13: -0.0422 REMARK 3 S21: -0.0048 S22: 0.0309 S23: -0.1628 REMARK 3 S31: -0.0874 S32: 0.2491 S33: 0.0649 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 318 A 406 REMARK 3 ORIGIN FOR THE GROUP (A): 74.9190 19.5400 32.7650 REMARK 3 T TENSOR REMARK 3 T11: 0.0678 T22: -0.0748 REMARK 3 T33: -0.0716 T12: 0.0378 REMARK 3 T13: -0.0713 T23: -0.0189 REMARK 3 L TENSOR REMARK 3 L11: 2.6097 L22: 2.7344 REMARK 3 L33: 4.3452 L12: -0.3953 REMARK 3 L13: -0.2414 L23: 1.8676 REMARK 3 S TENSOR REMARK 3 S11: -0.2150 S12: -0.3824 S13: 0.1357 REMARK 3 S21: 0.6029 S22: 0.0739 S23: -0.1574 REMARK 3 S31: 0.2280 S32: 0.1465 S33: 0.1411 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1449 A 1449 REMARK 3 ORIGIN FOR THE GROUP (A): 63.3700 12.9070 9.4520 REMARK 3 T TENSOR REMARK 3 T11: 0.1415 T22: 0.0948 REMARK 3 T33: 0.1573 T12: 0.0121 REMARK 3 T13: 0.0027 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 2.0771 L22: 1.9700 REMARK 3 L33: 1.4391 L12: 1.3351 REMARK 3 L13: 0.7503 L23: 1.6219 REMARK 3 S TENSOR REMARK 3 S11: -0.0374 S12: -0.0974 S13: -0.1283 REMARK 3 S21: -0.0179 S22: 0.1465 S23: 0.0190 REMARK 3 S31: -0.1139 S32: -0.0840 S33: -0.1092 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2GR2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000037450. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : ADSC REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42769 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.51700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: DIFFERENCE FOURIER REMARK 200 SOFTWARE USED: XTALVIEW REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M SODIUM FORMATE, 0.1M SODIUM REMARK 280 ACETATE, PH 5.4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.52400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 115.04800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 86.28600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 143.81000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.76200 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 57.52400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 115.04800 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 143.81000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 86.28600 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 28.76200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE SECOND PART OF THE BIOLOGICAL ASSEMBLY IS GENERATED BY REMARK 300 (X, X-Y, 1/6-Z). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 28.76200 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLN A 3 REMARK 465 GLU A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 407 REMARK 465 ALA A 408 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 344 CG CD OE1 OE2 REMARK 470 ARG A 389 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 401 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1643 O HOH A 1652 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1636 O HOH A 1636 8555 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 271 CB - CG - CD1 ANGL. DEV. = -10.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 53 -118.23 -128.85 REMARK 500 ALA A 71 67.53 -118.06 REMARK 500 ARG A 130 -39.15 -137.82 REMARK 500 ALA A 184 41.04 -147.77 REMARK 500 ASP A 252 89.00 -158.19 REMARK 500 GLU A 289 50.75 -104.87 REMARK 500 ALA A 314 -2.07 -140.43 REMARK 500 LYS A 351 113.74 -165.48 REMARK 500 ASN A 370 52.58 -151.52 REMARK 500 ASP A 394 122.55 -35.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 1449 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE APR A 1500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GQW RELATED DB: PDB REMARK 900 RELATED ID: 2GQY RELATED DB: PDB REMARK 900 RELATED ID: 2GQZ RELATED DB: PDB REMARK 900 RELATED ID: 2GR0 RELATED DB: PDB REMARK 900 RELATED ID: 2GR1 RELATED DB: PDB REMARK 900 RELATED ID: 2GR3 RELATED DB: PDB DBREF 2GR2 A 1 408 GB 9929802 BAA04112 1 408 SEQRES 1 A 408 MET SER GLN GLU ALA LEU LYS ALA PRO VAL VAL VAL LEU SEQRES 2 A 408 GLY ALA GLY LEU ALA SER VAL SER PHE VAL ALA GLU LEU SEQRES 3 A 408 ARG GLN ALA GLY TYR GLN GLY LEU ILE THR VAL VAL GLY SEQRES 4 A 408 ASP GLU ALA GLU ARG PRO TYR ASP ARG PRO PRO LEU SER SEQRES 5 A 408 LYS ASP PHE MET ALA HIS GLY ASP ALA GLU LYS ILE ARG SEQRES 6 A 408 LEU ASP CYS LYS ARG ALA PRO GLU VAL GLU TRP LEU LEU SEQRES 7 A 408 GLY VAL THR ALA GLN SER PHE ASP PRO GLN ALA HIS THR SEQRES 8 A 408 VAL ALA LEU SER ASP GLY ARG THR LEU PRO TYR GLY THR SEQRES 9 A 408 LEU VAL LEU ALA THR GLY ALA ALA PRO ARG ALA LEU PRO SEQRES 10 A 408 THR LEU GLN GLY ALA THR MET PRO VAL HIS THR LEU ARG SEQRES 11 A 408 THR LEU GLU ASP ALA ARG ARG ILE GLN ALA GLY LEU ARG SEQRES 12 A 408 PRO GLN SER ARG LEU LEU ILE VAL GLY GLY GLY VAL ILE SEQRES 13 A 408 GLY LEU GLU LEU ALA ALA THR ALA ARG THR ALA GLY VAL SEQRES 14 A 408 HIS VAL SER LEU VAL GLU THR GLN PRO ARG LEU MET SER SEQRES 15 A 408 ARG ALA ALA PRO ALA THR LEU ALA ASP PHE VAL ALA ARG SEQRES 16 A 408 TYR HIS ALA ALA GLN GLY VAL ASP LEU ARG PHE GLU ARG SEQRES 17 A 408 SER VAL THR GLY SER VAL ASP GLY VAL VAL LEU LEU ASP SEQRES 18 A 408 ASP GLY THR ARG ILE ALA ALA ASP MET VAL VAL VAL GLY SEQRES 19 A 408 ILE GLY VAL LEU ALA ASN ASP ALA LEU ALA ARG ALA ALA SEQRES 20 A 408 GLY LEU ALA CYS ASP ASP GLY ILE PHE VAL ASP ALA TYR SEQRES 21 A 408 GLY ARG THR THR CYS PRO ASP VAL TYR ALA LEU GLY ASP SEQRES 22 A 408 VAL THR ARG GLN ARG ASN PRO LEU SER GLY ARG PHE GLU SEQRES 23 A 408 ARG ILE GLU THR TRP SER ASN ALA GLN ASN GLN GLY ILE SEQRES 24 A 408 ALA VAL ALA ARG HIS LEU VAL ASP PRO THR ALA PRO GLY SEQRES 25 A 408 TYR ALA GLU LEU PRO TRP TYR TRP SER ASP GLN GLY ALA SEQRES 26 A 408 LEU ARG ILE GLN VAL ALA GLY LEU ALA SER GLY ASP GLU SEQRES 27 A 408 GLU ILE VAL ARG GLY GLU VAL SER LEU ASP ALA PRO LYS SEQRES 28 A 408 PHE THR LEU ILE GLU LEU GLN LYS GLY ARG ILE VAL GLY SEQRES 29 A 408 ALA THR CYS VAL ASN ASN ALA ARG ASP PHE ALA PRO LEU SEQRES 30 A 408 ARG ARG LEU LEU ALA VAL GLY ALA LYS PRO ASP ARG ALA SEQRES 31 A 408 ALA LEU ALA ASP PRO ALA THR ASP LEU ARG LYS LEU ALA SEQRES 32 A 408 ALA ALA VAL ALA ALA HET FAD A1449 53 HET APR A1500 36 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM APR ADENOSINE-5-DIPHOSPHORIBOSE FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 APR C15 H23 N5 O14 P2 FORMUL 4 HOH *233(H2 O) HELIX 1 1 GLY A 16 GLY A 30 1 15 HELIX 2 2 ARG A 48 SER A 52 5 5 HELIX 3 3 LYS A 53 GLY A 59 1 7 HELIX 4 4 ASP A 60 ILE A 64 5 5 HELIX 5 5 LEU A 116 GLN A 120 5 5 HELIX 6 6 THR A 131 ALA A 140 1 10 HELIX 7 7 GLY A 154 ALA A 167 1 14 HELIX 8 8 PRO A 186 GLN A 200 1 15 HELIX 9 9 ASP A 241 GLY A 248 1 8 HELIX 10 10 THR A 290 ASP A 307 1 18 HELIX 11 11 ASN A 370 VAL A 383 1 14 HELIX 12 12 ASP A 388 ASP A 394 1 7 HELIX 13 13 ASP A 398 VAL A 406 1 9 SHEET 1 A 5 GLU A 75 LEU A 78 0 SHEET 2 A 5 ILE A 35 GLY A 39 1 N VAL A 37 O LEU A 77 SHEET 3 A 5 VAL A 10 LEU A 13 1 N VAL A 12 O VAL A 38 SHEET 4 A 5 THR A 104 LEU A 107 1 O VAL A 106 N LEU A 13 SHEET 5 A 5 VAL A 268 ALA A 270 1 O TYR A 269 N LEU A 107 SHEET 1 B 3 ALA A 82 ASP A 86 0 SHEET 2 B 3 THR A 91 LEU A 94 -1 O ALA A 93 N GLN A 83 SHEET 3 B 3 THR A 99 PRO A 101 -1 O LEU A 100 N VAL A 92 SHEET 1 C 2 ALA A 111 PRO A 113 0 SHEET 2 C 2 VAL A 237 ALA A 239 -1 O LEU A 238 N ALA A 112 SHEET 1 D 5 VAL A 126 HIS A 127 0 SHEET 2 D 5 MET A 230 VAL A 233 1 O VAL A 231 N HIS A 127 SHEET 3 D 5 ARG A 147 VAL A 151 1 N VAL A 151 O VAL A 232 SHEET 4 D 5 HIS A 170 GLU A 175 1 O HIS A 170 N LEU A 148 SHEET 5 D 5 ASP A 203 PHE A 206 1 O ARG A 205 N LEU A 173 SHEET 1 E 3 VAL A 210 VAL A 214 0 SHEET 2 E 3 VAL A 217 LEU A 220 -1 O LEU A 219 N GLY A 212 SHEET 3 E 3 ARG A 225 ALA A 227 -1 O ILE A 226 N VAL A 218 SHEET 1 F 3 ILE A 255 PHE A 256 0 SHEET 2 F 3 THR A 275 ASN A 279 1 O ARG A 276 N ILE A 255 SHEET 3 F 3 ARG A 284 GLU A 286 -1 O ARG A 284 N ASN A 279 SHEET 1 G 5 TRP A 318 GLN A 323 0 SHEET 2 G 5 LEU A 326 GLY A 332 -1 O ILE A 328 N SER A 321 SHEET 3 G 5 ARG A 361 VAL A 368 -1 O ALA A 365 N ALA A 331 SHEET 4 G 5 PHE A 352 GLN A 358 -1 N PHE A 352 O VAL A 368 SHEET 5 G 5 GLU A 338 ARG A 342 -1 N ARG A 342 O THR A 353 CISPEP 1 ALA A 8 PRO A 9 0 -6.83 SITE 1 AC1 35 GLY A 14 GLY A 16 LEU A 17 ALA A 18 SITE 2 AC1 35 VAL A 38 ASP A 40 GLU A 41 ARG A 48 SITE 3 AC1 35 PRO A 49 SER A 52 LYS A 53 VAL A 80 SITE 4 AC1 35 ALA A 82 ALA A 108 THR A 109 GLY A 110 SITE 5 AC1 35 ARG A 130 GLY A 272 ASP A 273 GLU A 289 SITE 6 AC1 35 THR A 290 TRP A 291 ALA A 294 TYR A 319 SITE 7 AC1 35 TRP A 320 APR A1500 HOH A1501 HOH A1502 SITE 8 AC1 35 HOH A1503 HOH A1507 HOH A1510 HOH A1528 SITE 9 AC1 35 HOH A1536 HOH A1575 HOH A1694 SITE 1 AC2 28 ARG A 114 LEU A 116 VAL A 151 GLY A 152 SITE 2 AC2 28 GLY A 154 VAL A 155 ILE A 156 VAL A 174 SITE 3 AC2 28 GLU A 175 THR A 176 GLN A 177 ARG A 183 SITE 4 AC2 28 GLY A 234 ILE A 235 GLY A 236 VAL A 237 SITE 5 AC2 28 GLU A 289 FAD A1449 HOH A1576 HOH A1579 SITE 6 AC2 28 HOH A1633 HOH A1645 HOH A1653 HOH A1659 SITE 7 AC2 28 HOH A1661 HOH A1662 HOH A1674 HOH A1731 CRYST1 98.683 98.683 172.572 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010133 0.005851 0.000000 0.00000 SCALE2 0.000000 0.011701 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005795 0.00000