HEADER TRANSFERASE 25-APR-06 2GS7 TITLE CRYSTAL STRUCTURE OF THE INACTIVE EGFR KINASE DOMAIN IN COMPLEX WITH TITLE 2 AMP-PNP COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPIDERMAL GROWTH FACTOR RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: KINASE DOMAIN, RESIDUES 696-1022; COMPND 5 SYNONYM: RECEPTOR TYROSINE-PROTEIN KINASE ERBB-1; COMPND 6 EC: 2.7.10.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EGFR, ERBB1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULORVIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PFASTBAC-HT KEYWDS EGFR, KINASE, INACTIVE, AMP-PNP, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR X.ZHANG,J.GUREASKO,K.SHEN,P.A.COLE,J.KURIYAN REVDAT 5 30-AUG-23 2GS7 1 REMARK REVDAT 4 20-OCT-21 2GS7 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 2GS7 1 VERSN REVDAT 2 27-JUN-06 2GS7 1 JRNL REVDAT 1 20-JUN-06 2GS7 0 JRNL AUTH X.ZHANG,J.GUREASKO,K.SHEN,P.A.COLE,J.KURIYAN JRNL TITL AN ALLOSTERIC MECHANISM FOR ACTIVATION OF THE KINASE DOMAIN JRNL TITL 2 OF EPIDERMAL GROWTH FACTOR RECEPTOR JRNL REF CELL(CAMBRIDGE,MASS.) V. 125 1137 2006 JRNL REFN ISSN 0092-8674 JRNL PMID 16777603 JRNL DOI 10.1016/J.CELL.2006.05.013 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 89.6 REMARK 3 NUMBER OF REFLECTIONS : 23414 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.400 REMARK 3 FREE R VALUE TEST SET COUNT : 1673 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4505 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 75 REMARK 3 SOLVENT ATOMS : 169 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -12.45400 REMARK 3 B22 (A**2) : 18.57100 REMARK 3 B33 (A**2) : -6.11700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -25.29100 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.372 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 47.82 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ANP_PAR.TXT REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GS7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000037489. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1159 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : BLU-ICE REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24965 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11000 REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.32800 REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1XKK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.2 M NAI, 100 MM BIS REMARK 280 -TRIS PROPANE, PH 8.5, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.62650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAINS. THERE IS NO PHYSIOLOGICALLY REMARK 300 RELEVANT BIOLOGICAL ASSEMBLY FOR THIS STRUCTURE REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 669 REMARK 465 ALA A 670 REMARK 465 MET A 671 REMARK 465 GLY A 672 REMARK 465 GLU A 673 REMARK 465 ALA A 674 REMARK 465 PRO A 675 REMARK 465 ASN A 676 REMARK 465 GLN A 677 REMARK 465 ALA A 678 REMARK 465 ALA A 847 REMARK 465 GLU A 848 REMARK 465 GLY A 849 REMARK 465 GLY A 850 REMARK 465 ASP A 960 REMARK 465 GLU A 961 REMARK 465 ARG A 962 REMARK 465 MET A 963 REMARK 465 HIS A 964 REMARK 465 LEU A 965 REMARK 465 PRO A 966 REMARK 465 SER A 967 REMARK 465 PRO A 968 REMARK 465 THR A 969 REMARK 465 ASP A 970 REMARK 465 SER A 971 REMARK 465 ASN A 972 REMARK 465 PHE A 973 REMARK 465 TYR A 974 REMARK 465 ARG A 975 REMARK 465 ALA A 976 REMARK 465 LEU A 977 REMARK 465 MET A 978 REMARK 465 ASP A 979 REMARK 465 GLU A 980 REMARK 465 GLU A 981 REMARK 465 ASP A 982 REMARK 465 MET A 983 REMARK 465 ASP A 984 REMARK 465 ALA A 989 REMARK 465 ASP A 990 REMARK 465 GLU A 991 REMARK 465 TYR A 992 REMARK 465 LEU A 993 REMARK 465 ILE A 994 REMARK 465 PRO A 995 REMARK 465 GLN A 996 REMARK 465 GLN A 997 REMARK 465 GLY A 998 REMARK 465 GLY B 669 REMARK 465 ALA B 670 REMARK 465 MET B 671 REMARK 465 GLY B 672 REMARK 465 GLU B 673 REMARK 465 ALA B 674 REMARK 465 PRO B 675 REMARK 465 ASN B 676 REMARK 465 GLU B 848 REMARK 465 GLY B 849 REMARK 465 GLY B 850 REMARK 465 ASP B 960 REMARK 465 GLU B 961 REMARK 465 ARG B 962 REMARK 465 MET B 963 REMARK 465 HIS B 964 REMARK 465 LEU B 965 REMARK 465 PRO B 966 REMARK 465 SER B 967 REMARK 465 PRO B 968 REMARK 465 THR B 969 REMARK 465 ASP B 970 REMARK 465 SER B 971 REMARK 465 ASN B 972 REMARK 465 PHE B 973 REMARK 465 TYR B 974 REMARK 465 ARG B 975 REMARK 465 ALA B 976 REMARK 465 LEU B 977 REMARK 465 MET B 978 REMARK 465 ASP B 979 REMARK 465 GLU B 980 REMARK 465 GLU B 981 REMARK 465 ASP B 982 REMARK 465 MET B 983 REMARK 465 ASP B 984 REMARK 465 LEU B 993 REMARK 465 ILE B 994 REMARK 465 PRO B 995 REMARK 465 GLN B 996 REMARK 465 GLN B 997 REMARK 465 GLY B 998 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 713 CG CD CE NZ REMARK 470 LYS A 733 CG CD CE NZ REMARK 470 LYS A 822 CG CD CE NZ REMARK 470 GLU A 842 CG CD OE1 OE2 REMARK 470 LYS A 843 CG CD CE NZ REMARK 470 GLU A 844 CG CD OE1 OE2 REMARK 470 LYS A 905 CG CD CE NZ REMARK 470 GLU A 943 CG CD OE1 OE2 REMARK 470 GLN A 958 CG CD OE1 NE2 REMARK 470 GLN B 677 CG CD OE1 NE2 REMARK 470 LYS B 713 CG CD CE NZ REMARK 470 LYS B 733 CG CD CE NZ REMARK 470 GLU B 842 CG CD OE1 OE2 REMARK 470 LYS B 843 CG CD CE NZ REMARK 470 GLU B 844 CG CD OE1 OE2 REMARK 470 LYS B 905 CG CD CE NZ REMARK 470 GLN B 958 CG CD OE1 NE2 REMARK 470 VAL B 987 CG1 CG2 REMARK 470 GLU B 991 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS B 704 N - CA - C ANGL. DEV. = -17.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 685 23.23 -62.81 REMARK 500 ILE A 708 77.82 -104.76 REMARK 500 GLU A 712 165.39 -49.38 REMARK 500 LYS A 713 56.34 -111.73 REMARK 500 THR A 759 -133.10 -149.57 REMARK 500 HIS A 781 48.77 -150.21 REMARK 500 ASP A 783 84.97 -154.71 REMARK 500 ASN A 784 -7.91 -156.21 REMARK 500 ARG A 812 -18.97 73.69 REMARK 500 HIS A 826 102.57 177.39 REMARK 500 LEU A 838 9.22 -65.92 REMARK 500 GLU A 842 94.94 -59.58 REMARK 500 PRO A 853 63.71 -67.69 REMARK 500 LYS A 855 11.68 -69.28 REMARK 500 SER A 901 -70.53 -63.60 REMARK 500 ILE A 902 -7.84 -52.09 REMARK 500 ALA B 678 -80.13 -118.09 REMARK 500 LEU B 679 17.31 37.69 REMARK 500 ILE B 691 -63.89 -100.08 REMARK 500 GLU B 712 140.04 176.91 REMARK 500 PRO B 729 24.84 -77.86 REMARK 500 THR B 759 -133.70 -150.21 REMARK 500 HIS B 781 53.53 -108.52 REMARK 500 LYS B 782 -17.63 -46.46 REMARK 500 ASP B 783 115.83 -177.27 REMARK 500 ASN B 784 11.15 158.99 REMARK 500 ARG B 812 -3.07 68.95 REMARK 500 ASP B 813 64.82 -161.63 REMARK 500 HIS B 826 105.00 -171.36 REMARK 500 LEU B 838 8.64 -65.48 REMARK 500 GLU B 842 113.73 -31.69 REMARK 500 LYS B 843 -72.37 -61.65 REMARK 500 PRO B 853 72.83 -62.95 REMARK 500 LYS B 855 1.22 -67.93 REMARK 500 ARG B 934 153.98 -49.29 REMARK 500 PRO B 935 177.10 -59.10 REMARK 500 PHE B 937 -32.99 -37.20 REMARK 500 ASP B 950 54.80 -167.53 REMARK 500 VAL B 986 76.82 -7.73 REMARK 500 VAL B 987 -113.05 -80.53 REMARK 500 ASP B 988 136.39 171.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 100 O REMARK 620 2 ANP A 301 O1B 102.2 REMARK 620 3 ANP A 301 O2A 80.5 86.8 REMARK 620 4 ASN A 818 OD1 70.4 113.0 147.4 REMARK 620 5 ASP A 831 OD2 72.2 169.5 83.6 74.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 38 O REMARK 620 2 ANP B 302 O2B 54.9 REMARK 620 3 ANP B 302 O2A 71.1 83.8 REMARK 620 4 ANP B 302 O3A 83.6 49.7 51.7 REMARK 620 5 ASN B 818 OD1 58.8 72.9 129.6 122.6 REMARK 620 6 ASP B 831 OD2 52.3 106.9 79.7 124.2 66.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GS2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ACTIVE EGFR KINASE DOMAIN REMARK 900 RELATED ID: 2GS6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ACTIVE EGFR KINASE DOMAIN IN COMPLEX WITH REMARK 900 AN ATP ANALOG-PEPTIDE CONJUGATE DBREF 2GS7 A 672 998 UNP P00533 EGFR_HUMAN 696 1022 DBREF 2GS7 B 672 998 UNP P00533 EGFR_HUMAN 696 1022 SEQADV 2GS7 GLY A 669 UNP P00533 CLONING ARTIFACT SEQADV 2GS7 ALA A 670 UNP P00533 CLONING ARTIFACT SEQADV 2GS7 MET A 671 UNP P00533 CLONING ARTIFACT SEQADV 2GS7 ARG A 924 UNP P00533 VAL 948 ENGINEERED MUTATION SEQADV 2GS7 GLY B 669 UNP P00533 CLONING ARTIFACT SEQADV 2GS7 ALA B 670 UNP P00533 CLONING ARTIFACT SEQADV 2GS7 MET B 671 UNP P00533 CLONING ARTIFACT SEQADV 2GS7 ARG B 924 UNP P00533 VAL 948 ENGINEERED MUTATION SEQRES 1 A 330 GLY ALA MET GLY GLU ALA PRO ASN GLN ALA LEU LEU ARG SEQRES 2 A 330 ILE LEU LYS GLU THR GLU PHE LYS LYS ILE LYS VAL LEU SEQRES 3 A 330 GLY SER GLY ALA PHE GLY THR VAL TYR LYS GLY LEU TRP SEQRES 4 A 330 ILE PRO GLU GLY GLU LYS VAL LYS ILE PRO VAL ALA ILE SEQRES 5 A 330 LYS GLU LEU ARG GLU ALA THR SER PRO LYS ALA ASN LYS SEQRES 6 A 330 GLU ILE LEU ASP GLU ALA TYR VAL MET ALA SER VAL ASP SEQRES 7 A 330 ASN PRO HIS VAL CYS ARG LEU LEU GLY ILE CYS LEU THR SEQRES 8 A 330 SER THR VAL GLN LEU ILE THR GLN LEU MET PRO PHE GLY SEQRES 9 A 330 CYS LEU LEU ASP TYR VAL ARG GLU HIS LYS ASP ASN ILE SEQRES 10 A 330 GLY SER GLN TYR LEU LEU ASN TRP CYS VAL GLN ILE ALA SEQRES 11 A 330 LYS GLY MET ASN TYR LEU GLU ASP ARG ARG LEU VAL HIS SEQRES 12 A 330 ARG ASP LEU ALA ALA ARG ASN VAL LEU VAL LYS THR PRO SEQRES 13 A 330 GLN HIS VAL LYS ILE THR ASP PHE GLY LEU ALA LYS LEU SEQRES 14 A 330 LEU GLY ALA GLU GLU LYS GLU TYR HIS ALA GLU GLY GLY SEQRES 15 A 330 LYS VAL PRO ILE LYS TRP MET ALA LEU GLU SER ILE LEU SEQRES 16 A 330 HIS ARG ILE TYR THR HIS GLN SER ASP VAL TRP SER TYR SEQRES 17 A 330 GLY VAL THR VAL TRP GLU LEU MET THR PHE GLY SER LYS SEQRES 18 A 330 PRO TYR ASP GLY ILE PRO ALA SER GLU ILE SER SER ILE SEQRES 19 A 330 LEU GLU LYS GLY GLU ARG LEU PRO GLN PRO PRO ILE CYS SEQRES 20 A 330 THR ILE ASP VAL TYR MET ILE MET ARG LYS CYS TRP MET SEQRES 21 A 330 ILE ASP ALA ASP SER ARG PRO LYS PHE ARG GLU LEU ILE SEQRES 22 A 330 ILE GLU PHE SER LYS MET ALA ARG ASP PRO GLN ARG TYR SEQRES 23 A 330 LEU VAL ILE GLN GLY ASP GLU ARG MET HIS LEU PRO SER SEQRES 24 A 330 PRO THR ASP SER ASN PHE TYR ARG ALA LEU MET ASP GLU SEQRES 25 A 330 GLU ASP MET ASP ASP VAL VAL ASP ALA ASP GLU TYR LEU SEQRES 26 A 330 ILE PRO GLN GLN GLY SEQRES 1 B 330 GLY ALA MET GLY GLU ALA PRO ASN GLN ALA LEU LEU ARG SEQRES 2 B 330 ILE LEU LYS GLU THR GLU PHE LYS LYS ILE LYS VAL LEU SEQRES 3 B 330 GLY SER GLY ALA PHE GLY THR VAL TYR LYS GLY LEU TRP SEQRES 4 B 330 ILE PRO GLU GLY GLU LYS VAL LYS ILE PRO VAL ALA ILE SEQRES 5 B 330 LYS GLU LEU ARG GLU ALA THR SER PRO LYS ALA ASN LYS SEQRES 6 B 330 GLU ILE LEU ASP GLU ALA TYR VAL MET ALA SER VAL ASP SEQRES 7 B 330 ASN PRO HIS VAL CYS ARG LEU LEU GLY ILE CYS LEU THR SEQRES 8 B 330 SER THR VAL GLN LEU ILE THR GLN LEU MET PRO PHE GLY SEQRES 9 B 330 CYS LEU LEU ASP TYR VAL ARG GLU HIS LYS ASP ASN ILE SEQRES 10 B 330 GLY SER GLN TYR LEU LEU ASN TRP CYS VAL GLN ILE ALA SEQRES 11 B 330 LYS GLY MET ASN TYR LEU GLU ASP ARG ARG LEU VAL HIS SEQRES 12 B 330 ARG ASP LEU ALA ALA ARG ASN VAL LEU VAL LYS THR PRO SEQRES 13 B 330 GLN HIS VAL LYS ILE THR ASP PHE GLY LEU ALA LYS LEU SEQRES 14 B 330 LEU GLY ALA GLU GLU LYS GLU TYR HIS ALA GLU GLY GLY SEQRES 15 B 330 LYS VAL PRO ILE LYS TRP MET ALA LEU GLU SER ILE LEU SEQRES 16 B 330 HIS ARG ILE TYR THR HIS GLN SER ASP VAL TRP SER TYR SEQRES 17 B 330 GLY VAL THR VAL TRP GLU LEU MET THR PHE GLY SER LYS SEQRES 18 B 330 PRO TYR ASP GLY ILE PRO ALA SER GLU ILE SER SER ILE SEQRES 19 B 330 LEU GLU LYS GLY GLU ARG LEU PRO GLN PRO PRO ILE CYS SEQRES 20 B 330 THR ILE ASP VAL TYR MET ILE MET ARG LYS CYS TRP MET SEQRES 21 B 330 ILE ASP ALA ASP SER ARG PRO LYS PHE ARG GLU LEU ILE SEQRES 22 B 330 ILE GLU PHE SER LYS MET ALA ARG ASP PRO GLN ARG TYR SEQRES 23 B 330 LEU VAL ILE GLN GLY ASP GLU ARG MET HIS LEU PRO SER SEQRES 24 B 330 PRO THR ASP SER ASN PHE TYR ARG ALA LEU MET ASP GLU SEQRES 25 B 330 GLU ASP MET ASP ASP VAL VAL ASP ALA ASP GLU TYR LEU SEQRES 26 B 330 ILE PRO GLN GLN GLY HET MG A 202 1 HET IOD A 402 1 HET IOD A 403 1 HET IOD A 406 1 HET IOD A 409 1 HET IOD A 410 1 HET ANP A 301 31 HET MG B 201 1 HET IOD B 401 1 HET IOD B 404 1 HET IOD B 405 1 HET IOD B 407 1 HET IOD B 408 1 HET IOD B 411 1 HET ANP B 302 31 HETNAM MG MAGNESIUM ION HETNAM IOD IODIDE ION HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER FORMUL 3 MG 2(MG 2+) FORMUL 4 IOD 11(I 1-) FORMUL 9 ANP 2(C10 H17 N6 O12 P3) FORMUL 18 HOH *169(H2 O) HELIX 1 1 ALA A 731 ALA A 743 1 13 HELIX 2 2 CYS A 773 GLU A 780 1 8 HELIX 3 3 GLY A 786 ARG A 807 1 22 HELIX 4 4 ALA A 815 ARG A 817 5 3 HELIX 5 5 GLY A 833 LEU A 838 1 6 HELIX 6 6 PRO A 853 MET A 857 5 5 HELIX 7 7 ALA A 858 ARG A 865 1 8 HELIX 8 8 THR A 868 THR A 885 1 18 HELIX 9 9 GLU A 898 LYS A 905 1 8 HELIX 10 10 THR A 916 TRP A 927 1 12 HELIX 11 11 ASP A 930 ARG A 934 5 5 HELIX 12 12 LYS A 936 ALA A 948 1 13 HELIX 13 13 ASP A 950 LEU A 955 1 6 HELIX 14 14 ALA B 731 ALA B 743 1 13 HELIX 15 15 CYS B 773 HIS B 781 1 9 HELIX 16 16 GLY B 786 ARG B 807 1 22 HELIX 17 17 ALA B 815 ARG B 817 5 3 HELIX 18 18 GLY B 833 LEU B 838 1 6 HELIX 19 19 PRO B 853 MET B 857 5 5 HELIX 20 20 ALA B 858 ARG B 865 1 8 HELIX 21 21 THR B 868 THR B 885 1 18 HELIX 22 22 PRO B 895 SER B 897 5 3 HELIX 23 23 GLU B 898 LYS B 905 1 8 HELIX 24 24 THR B 916 TRP B 927 1 12 HELIX 25 25 LYS B 936 ALA B 948 1 13 HELIX 26 26 ASP B 950 LEU B 955 1 6 SHEET 1 A 6 ARG A 681 ILE A 682 0 SHEET 2 A 6 GLY A 755 ILE A 756 1 O ILE A 756 N ARG A 681 SHEET 3 A 6 GLN A 763 GLN A 767 -1 O ILE A 765 N GLY A 755 SHEET 4 A 6 ILE A 716 LEU A 723 -1 N LYS A 721 O LEU A 764 SHEET 5 A 6 GLY A 700 TRP A 707 -1 N TRP A 707 O ILE A 716 SHEET 6 A 6 PHE A 688 GLY A 695 -1 N LYS A 692 O LYS A 704 SHEET 1 B 2 VAL A 819 THR A 823 0 SHEET 2 B 2 HIS A 826 ILE A 829 -1 O LYS A 828 N LEU A 820 SHEET 1 C 6 ARG B 681 ILE B 682 0 SHEET 2 C 6 GLY B 755 LEU B 758 1 O ILE B 756 N ARG B 681 SHEET 3 C 6 VAL B 762 GLN B 767 -1 O ILE B 765 N GLY B 755 SHEET 4 C 6 ILE B 716 LEU B 723 -1 N LYS B 721 O LEU B 764 SHEET 5 C 6 GLY B 700 TRP B 707 -1 N TRP B 707 O ILE B 716 SHEET 6 C 6 PHE B 688 SER B 696 -1 N LYS B 692 O LYS B 704 SHEET 1 D 2 VAL B 819 THR B 823 0 SHEET 2 D 2 HIS B 826 ILE B 829 -1 O LYS B 828 N LEU B 820 LINK O HOH A 100 MG MG A 202 1555 1555 2.63 LINK MG MG A 202 O1B ANP A 301 1555 1555 2.85 LINK MG MG A 202 O2A ANP A 301 1555 1555 2.38 LINK MG MG A 202 OD1 ASN A 818 1555 1555 2.40 LINK MG MG A 202 OD2 ASP A 831 1555 1555 2.47 LINK O HOH B 38 MG MG B 201 1555 1555 2.88 LINK MG MG B 201 O2B ANP B 302 1555 1555 2.71 LINK MG MG B 201 O2A ANP B 302 1555 1555 2.49 LINK MG MG B 201 O3A ANP B 302 1555 1555 3.12 LINK MG MG B 201 OD1 ASN B 818 1555 1555 2.64 LINK MG MG B 201 OD2 ASP B 831 1555 1555 2.59 SITE 1 AC1 4 HOH B 38 ANP B 302 ASN B 818 ASP B 831 SITE 1 AC2 4 HOH A 100 ANP A 301 ASN A 818 ASP A 831 SITE 1 AC3 2 LYS A 715 GLN B 825 SITE 1 AC4 1 GLN A 825 SITE 1 AC5 1 LYS A 855 SITE 1 AC6 4 HOH A 33 PRO A 770 LYS B 704 PRO B 770 SITE 1 AC7 2 VAL A 810 ARG A 812 SITE 1 AC8 1 ARG B 812 SITE 1 AC9 1 ASN A 747 SITE 1 BC1 1 TYR A 891 SITE 1 BC2 1 TYR B 891 SITE 1 BC3 14 HOH A 100 MG A 202 LEU A 694 GLY A 695 SITE 2 BC3 14 GLY A 697 VAL A 702 ALA A 719 LYS A 721 SITE 3 BC3 14 THR A 766 GLN A 767 MET A 769 ARG A 817 SITE 4 BC3 14 LEU A 820 ASP A 831 SITE 1 BC4 18 HOH B 38 HOH B 61 HOH B 116 MG B 201 SITE 2 BC4 18 LEU B 694 GLY B 695 GLY B 697 ALA B 698 SITE 3 BC4 18 VAL B 702 ALA B 719 LYS B 721 THR B 766 SITE 4 BC4 18 GLN B 767 MET B 769 ARG B 817 ASN B 818 SITE 5 BC4 18 LEU B 820 ASP B 831 CRYST1 64.601 85.253 78.327 90.00 96.36 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015480 0.000000 0.001725 0.00000 SCALE2 0.000000 0.011730 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012846 0.00000 CONECT 1105 4508 CONECT 1205 4508 CONECT 3343 4545 CONECT 3447 4545 CONECT 4508 1105 1205 4519 4524 CONECT 4508 4631 CONECT 4514 4515 4516 4517 4521 CONECT 4515 4514 CONECT 4516 4514 CONECT 4517 4514 CONECT 4518 4519 4520 4521 4525 CONECT 4519 4508 4518 CONECT 4520 4518 CONECT 4521 4514 4518 CONECT 4522 4523 4524 4525 4526 CONECT 4523 4522 CONECT 4524 4508 4522 CONECT 4525 4518 4522 CONECT 4526 4522 4527 CONECT 4527 4526 4528 CONECT 4528 4527 4529 4530 CONECT 4529 4528 4534 CONECT 4530 4528 4531 4532 CONECT 4531 4530 CONECT 4532 4530 4533 4534 CONECT 4533 4532 CONECT 4534 4529 4532 4535 CONECT 4535 4534 4536 4544 CONECT 4536 4535 4537 CONECT 4537 4536 4538 CONECT 4538 4537 4539 4544 CONECT 4539 4538 4540 4541 CONECT 4540 4539 CONECT 4541 4539 4542 CONECT 4542 4541 4543 CONECT 4543 4542 4544 CONECT 4544 4535 4538 4543 CONECT 4545 3343 3447 4558 4562 CONECT 4545 4563 4684 CONECT 4552 4553 4554 4555 4559 CONECT 4553 4552 CONECT 4554 4552 CONECT 4555 4552 CONECT 4556 4557 4558 4559 4563 CONECT 4557 4556 CONECT 4558 4545 4556 CONECT 4559 4552 4556 CONECT 4560 4561 4562 4563 4564 CONECT 4561 4560 CONECT 4562 4545 4560 CONECT 4563 4545 4556 4560 CONECT 4564 4560 4565 CONECT 4565 4564 4566 CONECT 4566 4565 4567 4568 CONECT 4567 4566 4572 CONECT 4568 4566 4569 4570 CONECT 4569 4568 CONECT 4570 4568 4571 4572 CONECT 4571 4570 CONECT 4572 4567 4570 4573 CONECT 4573 4572 4574 4582 CONECT 4574 4573 4575 CONECT 4575 4574 4576 CONECT 4576 4575 4577 4582 CONECT 4577 4576 4578 4579 CONECT 4578 4577 CONECT 4579 4577 4580 CONECT 4580 4579 4581 CONECT 4581 4580 4582 CONECT 4582 4573 4576 4581 CONECT 4631 4508 CONECT 4684 4545 MASTER 497 0 15 26 16 0 20 6 4749 2 72 52 END