HEADER UNKNOWN FUNCTION 26-APR-06 2GSC TITLE CRYSTAL STRUCTURE OF THE CONSERVED HYPOTHETICAL CYTOSOLIC PROTEIN TITLE 2 XCC0516 FROM XANTHOMONAS CAMPESTRIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN XCC0516; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 SYNONYM: CONSERVED HYPOTHETICAL PROTEIN, CONSERVED HYPOTHETICAL COMPND 5 CYTOSOLIC PROTEIN XCC0516; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOMONAS CAMPESTRIS PV. CAMPESTRIS; SOURCE 3 ORGANISM_TAXID: 340; SOURCE 4 STRAIN: ATCC 33913; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FOUR-HELIX BUNDLE, HOMOPENTAMER, PENTAMERIC TOROID, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR L.Y.LIN,C.L.CHING,K.H.CHIN,S.H.CHOU,N.L.CHAN REVDAT 3 13-MAR-24 2GSC 1 REMARK REVDAT 2 12-AUG-08 2GSC 1 JRNL VERSN REVDAT 1 03-OCT-06 2GSC 0 JRNL AUTH L.Y.LIN,C.L.CHING,K.H.CHIN,S.H.CHOU,N.L.CHAN JRNL TITL CRYSTAL STRUCTURE OF THE CONSERVED HYPOTHETICAL CYTOSOLIC JRNL TITL 2 PROTEIN XCC0516 FROM XANTHOMONAS CAMPESTRIS REVEALS A NOVEL JRNL TITL 3 QUATERNARY STRUCTURE ASSEMBLED BY FIVE FOUR-HELIX BUNDLES. JRNL REF PROTEINS V. 65 783 2006 JRNL REFN ISSN 0887-3585 JRNL PMID 16948161 JRNL DOI 10.1002/PROT.21105 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 22463 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1157 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1419 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2000 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4548 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 85 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.40000 REMARK 3 B22 (A**2) : 1.35000 REMARK 3 B33 (A**2) : 0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.711 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.329 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.219 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.218 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.912 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.859 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4609 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6214 ; 1.246 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 560 ; 5.668 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 243 ;37.366 ;21.811 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 822 ;19.574 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 77 ;17.678 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 694 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3522 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2211 ; 0.211 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3178 ; 0.298 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 115 ; 0.156 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 63 ; 0.193 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 36 ; 0.194 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2922 ; 0.625 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4525 ; 1.051 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1897 ; 1.608 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1689 ; 2.679 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2GSC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000037493. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL12B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537, 0.97991, 0.97972 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : ADSC REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22715 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.14600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200MM KCL, 5MM MGCL2, 50MM NA REMARK 280 CACODYLATE PH 6.0, 16%(W/V) 1,6-HEXANEDIOL, 100MM CSCL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 43.89700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.12850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.89700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.12850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 129 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ASN A 3 REMARK 465 ARG A 4 REMARK 465 GLU A 5 REMARK 465 SER A 6 REMARK 465 ALA A 7 REMARK 465 GLN A 8 REMARK 465 ARG A 64 REMARK 465 SER A 65 REMARK 465 THR A 66 REMARK 465 PRO A 67 REMARK 465 GLY A 126 REMARK 465 ALA A 127 REMARK 465 ALA A 128 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 ASN B 3 REMARK 465 ARG B 4 REMARK 465 GLU B 5 REMARK 465 SER B 6 REMARK 465 ARG B 124 REMARK 465 ARG B 125 REMARK 465 GLY B 126 REMARK 465 ALA B 127 REMARK 465 ALA B 128 REMARK 465 MET C 1 REMARK 465 GLU C 2 REMARK 465 ASN C 3 REMARK 465 ARG C 4 REMARK 465 GLU C 5 REMARK 465 SER C 6 REMARK 465 ALA C 7 REMARK 465 GLN C 8 REMARK 465 ARG C 64 REMARK 465 SER C 65 REMARK 465 THR C 66 REMARK 465 PRO C 67 REMARK 465 ARG C 123 REMARK 465 ARG C 124 REMARK 465 ARG C 125 REMARK 465 GLY C 126 REMARK 465 ALA C 127 REMARK 465 ALA C 128 REMARK 465 MET D 1 REMARK 465 GLU D 2 REMARK 465 ASN D 3 REMARK 465 ARG D 4 REMARK 465 GLU D 5 REMARK 465 SER D 6 REMARK 465 ALA D 7 REMARK 465 GLN D 8 REMARK 465 ARG D 124 REMARK 465 ARG D 125 REMARK 465 GLY D 126 REMARK 465 ALA D 127 REMARK 465 ALA D 128 REMARK 465 MET E 1 REMARK 465 GLU E 2 REMARK 465 ASN E 3 REMARK 465 ARG E 4 REMARK 465 GLU E 5 REMARK 465 SER E 6 REMARK 465 ALA E 7 REMARK 465 GLN E 8 REMARK 465 ARG E 9 REMARK 465 LEU E 122 REMARK 465 ARG E 123 REMARK 465 ARG E 124 REMARK 465 ARG E 125 REMARK 465 GLY E 126 REMARK 465 ALA E 127 REMARK 465 ALA E 128 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO D 10 C - N - CA ANGL. DEV. = 9.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 98 -62.07 -27.07 REMARK 500 ARG B 9 75.82 -119.95 REMARK 500 PRO D 35 137.23 -37.93 REMARK 500 ALA D 121 0.20 -56.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG D 9 PRO D 10 121.24 REMARK 500 REMARK 500 REMARK: NULL DBREF 2GSC A 1 128 UNP Q8PD29 Q8PD29_XANCP 1 128 DBREF 2GSC B 1 128 UNP Q8PD29 Q8PD29_XANCP 1 128 DBREF 2GSC C 1 128 UNP Q8PD29 Q8PD29_XANCP 1 128 DBREF 2GSC D 1 128 UNP Q8PD29 Q8PD29_XANCP 1 128 DBREF 2GSC E 1 128 UNP Q8PD29 Q8PD29_XANCP 1 128 SEQRES 1 A 128 MET GLU ASN ARG GLU SER ALA GLN ARG PRO HIS GLU ARG SEQRES 2 A 128 LEU ASP ALA TRP ARG ASP SER MET GLU LEU VAL GLU MET SEQRES 3 A 128 ILE TYR ARG LEU THR GLU VAL PHE PRO ASP GLN GLU ARG SEQRES 4 A 128 TYR GLY LEU THR ALA GLN LEU ARG ARG ALA ALA VAL SER SEQRES 5 A 128 ILE PRO SER ASN ILE ALA GLU GLY ALA ALA ARG ARG SER SEQRES 6 A 128 THR PRO ASP TYR SER ARG PHE LEU SER ILE ALA ARG GLY SEQRES 7 A 128 SER LEU SER GLU LEU ASP THR GLN VAL GLN ILE ALA ALA SEQRES 8 A 128 ARG LEU GLY TYR SER ARG SER GLU ASP ASP GLN SER VAL SEQRES 9 A 128 ARG ARG GLN VAL ASP LEU VAL PHE ALA LYS LEU THR ALA SEQRES 10 A 128 LEU MET ASN ALA LEU ARG ARG ARG GLY ALA ALA SEQRES 1 B 128 MET GLU ASN ARG GLU SER ALA GLN ARG PRO HIS GLU ARG SEQRES 2 B 128 LEU ASP ALA TRP ARG ASP SER MET GLU LEU VAL GLU MET SEQRES 3 B 128 ILE TYR ARG LEU THR GLU VAL PHE PRO ASP GLN GLU ARG SEQRES 4 B 128 TYR GLY LEU THR ALA GLN LEU ARG ARG ALA ALA VAL SER SEQRES 5 B 128 ILE PRO SER ASN ILE ALA GLU GLY ALA ALA ARG ARG SER SEQRES 6 B 128 THR PRO ASP TYR SER ARG PHE LEU SER ILE ALA ARG GLY SEQRES 7 B 128 SER LEU SER GLU LEU ASP THR GLN VAL GLN ILE ALA ALA SEQRES 8 B 128 ARG LEU GLY TYR SER ARG SER GLU ASP ASP GLN SER VAL SEQRES 9 B 128 ARG ARG GLN VAL ASP LEU VAL PHE ALA LYS LEU THR ALA SEQRES 10 B 128 LEU MET ASN ALA LEU ARG ARG ARG GLY ALA ALA SEQRES 1 C 128 MET GLU ASN ARG GLU SER ALA GLN ARG PRO HIS GLU ARG SEQRES 2 C 128 LEU ASP ALA TRP ARG ASP SER MET GLU LEU VAL GLU MET SEQRES 3 C 128 ILE TYR ARG LEU THR GLU VAL PHE PRO ASP GLN GLU ARG SEQRES 4 C 128 TYR GLY LEU THR ALA GLN LEU ARG ARG ALA ALA VAL SER SEQRES 5 C 128 ILE PRO SER ASN ILE ALA GLU GLY ALA ALA ARG ARG SER SEQRES 6 C 128 THR PRO ASP TYR SER ARG PHE LEU SER ILE ALA ARG GLY SEQRES 7 C 128 SER LEU SER GLU LEU ASP THR GLN VAL GLN ILE ALA ALA SEQRES 8 C 128 ARG LEU GLY TYR SER ARG SER GLU ASP ASP GLN SER VAL SEQRES 9 C 128 ARG ARG GLN VAL ASP LEU VAL PHE ALA LYS LEU THR ALA SEQRES 10 C 128 LEU MET ASN ALA LEU ARG ARG ARG GLY ALA ALA SEQRES 1 D 128 MET GLU ASN ARG GLU SER ALA GLN ARG PRO HIS GLU ARG SEQRES 2 D 128 LEU ASP ALA TRP ARG ASP SER MET GLU LEU VAL GLU MET SEQRES 3 D 128 ILE TYR ARG LEU THR GLU VAL PHE PRO ASP GLN GLU ARG SEQRES 4 D 128 TYR GLY LEU THR ALA GLN LEU ARG ARG ALA ALA VAL SER SEQRES 5 D 128 ILE PRO SER ASN ILE ALA GLU GLY ALA ALA ARG ARG SER SEQRES 6 D 128 THR PRO ASP TYR SER ARG PHE LEU SER ILE ALA ARG GLY SEQRES 7 D 128 SER LEU SER GLU LEU ASP THR GLN VAL GLN ILE ALA ALA SEQRES 8 D 128 ARG LEU GLY TYR SER ARG SER GLU ASP ASP GLN SER VAL SEQRES 9 D 128 ARG ARG GLN VAL ASP LEU VAL PHE ALA LYS LEU THR ALA SEQRES 10 D 128 LEU MET ASN ALA LEU ARG ARG ARG GLY ALA ALA SEQRES 1 E 128 MET GLU ASN ARG GLU SER ALA GLN ARG PRO HIS GLU ARG SEQRES 2 E 128 LEU ASP ALA TRP ARG ASP SER MET GLU LEU VAL GLU MET SEQRES 3 E 128 ILE TYR ARG LEU THR GLU VAL PHE PRO ASP GLN GLU ARG SEQRES 4 E 128 TYR GLY LEU THR ALA GLN LEU ARG ARG ALA ALA VAL SER SEQRES 5 E 128 ILE PRO SER ASN ILE ALA GLU GLY ALA ALA ARG ARG SER SEQRES 6 E 128 THR PRO ASP TYR SER ARG PHE LEU SER ILE ALA ARG GLY SEQRES 7 E 128 SER LEU SER GLU LEU ASP THR GLN VAL GLN ILE ALA ALA SEQRES 8 E 128 ARG LEU GLY TYR SER ARG SER GLU ASP ASP GLN SER VAL SEQRES 9 E 128 ARG ARG GLN VAL ASP LEU VAL PHE ALA LYS LEU THR ALA SEQRES 10 E 128 LEU MET ASN ALA LEU ARG ARG ARG GLY ALA ALA FORMUL 6 HOH *85(H2 O) HELIX 1 1 PRO A 10 ARG A 13 5 4 HELIX 2 2 LEU A 14 THR A 31 1 18 HELIX 3 3 GLU A 32 PHE A 34 5 3 HELIX 4 4 PRO A 35 ARG A 39 5 5 HELIX 5 5 GLY A 41 ALA A 61 1 21 HELIX 6 6 ASP A 68 LEU A 93 1 26 HELIX 7 7 ARG A 97 ARG A 125 1 29 HELIX 8 8 PRO B 10 ARG B 13 5 4 HELIX 9 9 LEU B 14 GLU B 32 1 19 HELIX 10 10 VAL B 33 PHE B 34 5 2 HELIX 11 11 PRO B 35 ARG B 39 5 5 HELIX 12 12 GLY B 41 ALA B 62 1 22 HELIX 13 13 SER B 65 LEU B 93 1 29 HELIX 14 14 ARG B 97 LEU B 122 1 26 HELIX 15 15 ARG C 9 ARG C 13 5 5 HELIX 16 16 LEU C 14 GLU C 32 1 19 HELIX 17 17 PRO C 35 ARG C 39 5 5 HELIX 18 18 GLY C 41 ALA C 62 1 22 HELIX 19 19 ASP C 68 GLY C 94 1 27 HELIX 20 20 ARG C 97 ALA C 121 1 25 HELIX 21 21 PRO D 10 ARG D 13 5 4 HELIX 22 22 LEU D 14 GLU D 32 1 19 HELIX 23 23 VAL D 33 PHE D 34 5 2 HELIX 24 24 PRO D 35 ARG D 39 5 5 HELIX 25 25 GLY D 41 ARG D 63 1 23 HELIX 26 26 SER D 65 LEU D 93 1 29 HELIX 27 27 ARG D 97 ALA D 121 1 25 HELIX 28 28 LEU D 122 ARG D 123 5 2 HELIX 29 29 PRO E 10 ARG E 13 5 4 HELIX 30 30 LEU E 14 GLU E 32 1 19 HELIX 31 31 VAL E 33 PHE E 34 5 2 HELIX 32 32 PRO E 35 ARG E 39 5 5 HELIX 33 33 GLY E 41 ALA E 62 1 22 HELIX 34 34 SER E 65 GLY E 94 1 30 HELIX 35 35 ARG E 97 MET E 119 1 23 CISPEP 1 TYR C 40 GLY C 41 0 20.50 CISPEP 2 TYR D 40 GLY D 41 0 20.28 CISPEP 3 TYR E 40 GLY E 41 0 26.56 CRYST1 87.794 104.257 66.489 90.00 90.00 90.00 P 21 21 2 20 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011390 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009592 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015040 0.00000