HEADER HYDROLASE 26-APR-06 2GSN TITLE STRUCTURE OF XAC NUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHODIESTERASE-NUCLEOTIDE PYROPHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES (44-425); COMPND 5 EC: 3.6.1.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOMONAS AXONOPODIS PV. CITRI STR. 306; SOURCE 3 ORGANISM_TAXID: 190486; SOURCE 4 STRAIN: PV. CITRI STR. 306; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA BETA, NPP, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.G.ZALATAN,T.D.FENN,A.T.BRUNGER,D.HERSCHLAG REVDAT 6 09-OCT-24 2GSN 1 REMARK LINK REVDAT 5 18-OCT-17 2GSN 1 REMARK REVDAT 4 13-JUL-11 2GSN 1 VERSN REVDAT 3 24-FEB-09 2GSN 1 VERSN REVDAT 2 22-AUG-06 2GSN 1 JRNL REVDAT 1 01-AUG-06 2GSN 0 JRNL AUTH J.G.ZALATAN,T.D.FENN,A.T.BRUNGER,D.HERSCHLAG JRNL TITL STRUCTURAL AND FUNCTIONAL COMPARISONS OF NUCLEOTIDE JRNL TITL 2 PYROPHOSPHATASE/PHOSPHODIESTERASE AND ALKALINE PHOSPHATASE: JRNL TITL 3 IMPLICATIONS FOR MECHANISM AND EVOLUTION JRNL REF BIOCHEMISTRY V. 45 9788 2006 JRNL REFN ISSN 0006-2960 JRNL PMID 16893180 JRNL DOI 10.1021/BI060847T REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 63794 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3398 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3809 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.02 REMARK 3 BIN R VALUE (WORKING SET) : 0.3650 REMARK 3 BIN FREE R VALUE SET COUNT : 209 REMARK 3 BIN FREE R VALUE : 0.4180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5882 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 739 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.27000 REMARK 3 B22 (A**2) : 0.38000 REMARK 3 B33 (A**2) : -0.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.131 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.118 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.137 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6195 ; 0.008 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 5535 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8483 ; 1.144 ; 1.936 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12808 ; 0.802 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 796 ; 5.938 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 286 ;33.996 ;22.517 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 912 ;12.686 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 61 ;11.901 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 893 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7171 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1318 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1360 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 5828 ; 0.189 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2986 ; 0.170 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 3510 ; 0.081 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 576 ; 0.139 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 8 ; 0.042 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 31 ; 0.214 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 162 ; 0.286 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 62 ; 0.161 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4990 ; 0.618 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1586 ; 0.126 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6263 ; 0.716 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2667 ; 1.265 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2220 ; 1.833 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 44 A 425 4 REMARK 3 1 B 44 B 425 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 5649 ; 0.26 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 5649 ; 0.44 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 44 A 425 REMARK 3 ORIGIN FOR THE GROUP (A): 23.9846 39.7713 27.0702 REMARK 3 T TENSOR REMARK 3 T11: -0.1069 T22: -0.1079 REMARK 3 T33: -0.1256 T12: 0.0046 REMARK 3 T13: -0.0129 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 1.4103 L22: 0.6830 REMARK 3 L33: 0.6140 L12: 0.1728 REMARK 3 L13: 0.1137 L23: 0.1293 REMARK 3 S TENSOR REMARK 3 S11: -0.0420 S12: 0.1213 S13: 0.0865 REMARK 3 S21: -0.0766 S22: 0.0271 S23: 0.0486 REMARK 3 S31: -0.0392 S32: -0.0193 S33: 0.0149 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 44 B 425 REMARK 3 ORIGIN FOR THE GROUP (A): 41.0993 39.0862 60.4249 REMARK 3 T TENSOR REMARK 3 T11: -0.0736 T22: -0.1144 REMARK 3 T33: -0.1321 T12: 0.0003 REMARK 3 T13: -0.0056 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 1.1868 L22: 0.5632 REMARK 3 L33: 0.3169 L12: -0.1356 REMARK 3 L13: -0.0393 L23: 0.0220 REMARK 3 S TENSOR REMARK 3 S11: -0.0298 S12: -0.0763 S13: -0.0051 REMARK 3 S21: 0.0856 S22: 0.0173 S23: -0.0289 REMARK 3 S31: 0.0261 S32: 0.0050 S33: 0.0125 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2GSN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000037504. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-SEP-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2826,1.2831,1.2782 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : BOS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67365 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS HCL, 20% PEG 3350, PH REMARK 280 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.84150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.76350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.34600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.76350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.84150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.34600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DIMER IN ASYMMETRIC UNIT, LIKELY FUNCTIONAL AS A MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 40 REMARK 465 SER A 41 REMARK 465 ALA A 42 REMARK 465 SER A 43 REMARK 465 PRO A 426 REMARK 465 PRO A 427 REMARK 465 ALA A 428 REMARK 465 PRO A 429 REMARK 465 ASP A 430 REMARK 465 ALA A 431 REMARK 465 ARG A 432 REMARK 465 ALA B 40 REMARK 465 SER B 41 REMARK 465 ALA B 42 REMARK 465 SER B 43 REMARK 465 PRO B 426 REMARK 465 PRO B 427 REMARK 465 ALA B 428 REMARK 465 PRO B 429 REMARK 465 ASP B 430 REMARK 465 ALA B 431 REMARK 465 ARG B 432 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN B 170 O HOH B 1361 2.00 REMARK 500 O HOH A 1076 O HOH A 1312 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 194 -166.06 -125.14 REMARK 500 ASP A 194 -166.06 -124.99 REMARK 500 HIS A 216 -9.47 -140.98 REMARK 500 HIS A 267 31.68 -98.10 REMARK 500 ARG A 354 90.89 -61.03 REMARK 500 ALA A 355 100.44 -58.31 REMARK 500 ARG A 357 -67.56 176.21 REMARK 500 HIS A 363 -156.19 -119.91 REMARK 500 ASP B 194 -166.60 -122.71 REMARK 500 ASP B 194 -166.60 -121.77 REMARK 500 HIS B 267 30.46 -98.13 REMARK 500 ARG B 357 -73.58 -163.49 REMARK 500 HIS B 363 -156.09 -124.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1000 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 54 OD1 REMARK 620 2 THR A 90 OG1 123.0 REMARK 620 3 ASP A 257 OD2 108.5 110.6 REMARK 620 4 HIS A 258 NE2 105.5 107.2 99.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 210 OD2 REMARK 620 2 ASP A 210 OD1 56.0 REMARK 620 3 HIS A 214 NE2 92.3 107.8 REMARK 620 4 HIS A 363 NE2 153.9 99.8 106.0 REMARK 620 5 HOH A1277 O 84.0 116.4 122.4 100.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 54 OD1 REMARK 620 2 THR B 90 OG1 122.4 REMARK 620 3 ASP B 257 OD2 107.8 108.3 REMARK 620 4 HIS B 258 NE2 107.6 108.0 100.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1003 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 210 OD1 REMARK 620 2 ASP B 210 OD2 55.6 REMARK 620 3 HIS B 214 NE2 107.1 91.6 REMARK 620 4 HIS B 363 NE2 98.3 152.3 106.4 REMARK 620 5 HOH B1340 O 115.4 85.1 124.7 100.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1003 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GSO RELATED DB: PDB REMARK 900 RELATED ID: 2GSU RELATED DB: PDB DBREF 2GSN A 40 432 UNP Q8PIS1 Q8PIS1_XANAC 40 432 DBREF 2GSN B 40 432 UNP Q8PIS1 Q8PIS1_XANAC 40 432 SEQRES 1 A 393 ALA SER ALA SER THR PRO HIS ALA LEU LEU LEU ILE SER SEQRES 2 A 393 ILE ASP GLY LEU ARG ALA ASP MET LEU ASP ARG GLY ILE SEQRES 3 A 393 THR PRO ASN LEU SER HIS LEU ALA ARG GLU GLY VAL ARG SEQRES 4 A 393 ALA ARG TRP MET ALA PRO SER TYR PRO SER LEU THR PHE SEQRES 5 A 393 PRO ASN HIS TYR THR LEU VAL THR GLY LEU ARG PRO ASP SEQRES 6 A 393 HIS HIS GLY ILE VAL HIS ASN SER MET ARG ASP PRO THR SEQRES 7 A 393 LEU GLY GLY PHE TRP LEU SER LYS SER GLU ALA VAL GLY SEQRES 8 A 393 ASP ALA ARG TRP TRP GLY GLY GLU PRO VAL TRP VAL GLY SEQRES 9 A 393 VAL GLU ASN THR GLY GLN HIS ALA ALA THR TRP SER TRP SEQRES 10 A 393 PRO GLY SER GLU ALA ALA ILE LYS GLY VAL ARG PRO SER SEQRES 11 A 393 GLN TRP ARG HIS TYR GLN LYS GLY VAL ARG LEU ASP THR SEQRES 12 A 393 ARG VAL ASP ALA VAL ARG GLY TRP LEU ALA THR ASP GLY SEQRES 13 A 393 ALA GLN ARG ASN ARG LEU VAL THR LEU TYR PHE GLU HIS SEQRES 14 A 393 VAL ASP GLU ALA GLY HIS ASP HIS GLY PRO GLU SER ARG SEQRES 15 A 393 GLN TYR ALA ASP ALA VAL ARG ALA VAL ASP ALA ALA ILE SEQRES 16 A 393 GLY ARG LEU LEU ALA GLY MET GLN ARG ASP GLY THR ARG SEQRES 17 A 393 ALA ARG THR ASN ILE ILE VAL VAL SER ASP HIS GLY MET SEQRES 18 A 393 ALA GLU VAL ALA PRO GLY HIS ALA ILE SER VAL GLU ASP SEQRES 19 A 393 ILE ALA PRO PRO GLN ILE ALA THR ALA ILE THR ASP GLY SEQRES 20 A 393 GLN VAL ILE GLY PHE GLU PRO LEU PRO GLY GLN GLN ALA SEQRES 21 A 393 ALA ALA GLU ALA SER VAL LEU GLY ALA HIS ASP HIS TYR SEQRES 22 A 393 ASP CYS TRP ARG LYS ALA GLU LEU PRO ALA ARG TRP GLN SEQRES 23 A 393 TYR GLY SER HIS PRO ARG ILE PRO SER LEU VAL CYS GLN SEQRES 24 A 393 MET HIS GLU GLY TRP ASP ALA LEU PHE PRO ASP LYS LEU SEQRES 25 A 393 ALA LYS ARG ALA GLN ARG GLY THR ARG GLY SER HIS GLY SEQRES 26 A 393 TYR ASP PRO ALA LEU PRO SER MET ARG ALA VAL PHE LEU SEQRES 27 A 393 ALA GLN GLY PRO ASP LEU ALA GLN GLY LYS THR LEU PRO SEQRES 28 A 393 GLY PHE ASP ASN VAL ASP VAL TYR ALA LEU MET SER ARG SEQRES 29 A 393 LEU LEU GLY ILE PRO ALA ALA PRO ASN ASP GLY ASN PRO SEQRES 30 A 393 ALA THR LEU LEU PRO ALA LEU ARG MET PRO PRO ALA PRO SEQRES 31 A 393 ASP ALA ARG SEQRES 1 B 393 ALA SER ALA SER THR PRO HIS ALA LEU LEU LEU ILE SER SEQRES 2 B 393 ILE ASP GLY LEU ARG ALA ASP MET LEU ASP ARG GLY ILE SEQRES 3 B 393 THR PRO ASN LEU SER HIS LEU ALA ARG GLU GLY VAL ARG SEQRES 4 B 393 ALA ARG TRP MET ALA PRO SER TYR PRO SER LEU THR PHE SEQRES 5 B 393 PRO ASN HIS TYR THR LEU VAL THR GLY LEU ARG PRO ASP SEQRES 6 B 393 HIS HIS GLY ILE VAL HIS ASN SER MET ARG ASP PRO THR SEQRES 7 B 393 LEU GLY GLY PHE TRP LEU SER LYS SER GLU ALA VAL GLY SEQRES 8 B 393 ASP ALA ARG TRP TRP GLY GLY GLU PRO VAL TRP VAL GLY SEQRES 9 B 393 VAL GLU ASN THR GLY GLN HIS ALA ALA THR TRP SER TRP SEQRES 10 B 393 PRO GLY SER GLU ALA ALA ILE LYS GLY VAL ARG PRO SER SEQRES 11 B 393 GLN TRP ARG HIS TYR GLN LYS GLY VAL ARG LEU ASP THR SEQRES 12 B 393 ARG VAL ASP ALA VAL ARG GLY TRP LEU ALA THR ASP GLY SEQRES 13 B 393 ALA GLN ARG ASN ARG LEU VAL THR LEU TYR PHE GLU HIS SEQRES 14 B 393 VAL ASP GLU ALA GLY HIS ASP HIS GLY PRO GLU SER ARG SEQRES 15 B 393 GLN TYR ALA ASP ALA VAL ARG ALA VAL ASP ALA ALA ILE SEQRES 16 B 393 GLY ARG LEU LEU ALA GLY MET GLN ARG ASP GLY THR ARG SEQRES 17 B 393 ALA ARG THR ASN ILE ILE VAL VAL SER ASP HIS GLY MET SEQRES 18 B 393 ALA GLU VAL ALA PRO GLY HIS ALA ILE SER VAL GLU ASP SEQRES 19 B 393 ILE ALA PRO PRO GLN ILE ALA THR ALA ILE THR ASP GLY SEQRES 20 B 393 GLN VAL ILE GLY PHE GLU PRO LEU PRO GLY GLN GLN ALA SEQRES 21 B 393 ALA ALA GLU ALA SER VAL LEU GLY ALA HIS ASP HIS TYR SEQRES 22 B 393 ASP CYS TRP ARG LYS ALA GLU LEU PRO ALA ARG TRP GLN SEQRES 23 B 393 TYR GLY SER HIS PRO ARG ILE PRO SER LEU VAL CYS GLN SEQRES 24 B 393 MET HIS GLU GLY TRP ASP ALA LEU PHE PRO ASP LYS LEU SEQRES 25 B 393 ALA LYS ARG ALA GLN ARG GLY THR ARG GLY SER HIS GLY SEQRES 26 B 393 TYR ASP PRO ALA LEU PRO SER MET ARG ALA VAL PHE LEU SEQRES 27 B 393 ALA GLN GLY PRO ASP LEU ALA GLN GLY LYS THR LEU PRO SEQRES 28 B 393 GLY PHE ASP ASN VAL ASP VAL TYR ALA LEU MET SER ARG SEQRES 29 B 393 LEU LEU GLY ILE PRO ALA ALA PRO ASN ASP GLY ASN PRO SEQRES 30 B 393 ALA THR LEU LEU PRO ALA LEU ARG MET PRO PRO ALA PRO SEQRES 31 B 393 ASP ALA ARG HET ZN A1000 1 HET ZN A1001 1 HET ZN B1002 1 HET ZN B1003 1 HETNAM ZN ZINC ION FORMUL 3 ZN 4(ZN 2+) FORMUL 7 HOH *739(H2 O) HELIX 1 1 ARG A 57 ARG A 63 5 7 HELIX 2 2 THR A 66 GLY A 76 1 11 HELIX 3 3 LEU A 89 GLY A 100 1 12 HELIX 4 4 ARG A 102 GLY A 107 1 6 HELIX 5 5 LYS A 125 GLY A 130 1 6 HELIX 6 6 ASP A 131 TRP A 135 5 5 HELIX 7 7 PRO A 139 ASN A 146 1 8 HELIX 8 8 ALA A 162 VAL A 166 5 5 HELIX 9 9 ARG A 179 THR A 193 1 15 HELIX 10 10 ASP A 194 GLN A 197 5 4 HELIX 11 11 GLU A 207 GLY A 217 1 11 HELIX 12 12 SER A 220 ASP A 244 1 25 HELIX 13 13 THR A 246 ALA A 248 5 3 HELIX 14 14 VAL A 271 ALA A 275 1 5 HELIX 15 15 GLN A 297 LEU A 306 1 10 HELIX 16 16 ALA A 318 LEU A 320 5 3 HELIX 17 17 PRO A 321 GLN A 325 5 5 HELIX 18 18 PHE A 347 ARG A 354 1 8 HELIX 19 19 LEU A 369 ARG A 373 5 5 HELIX 20 20 ASP A 396 GLY A 406 1 11 HELIX 21 21 LEU A 419 LEU A 423 5 5 HELIX 22 22 ARG B 57 ARG B 63 5 7 HELIX 23 23 THR B 66 GLY B 76 1 11 HELIX 24 24 LEU B 89 GLY B 100 1 12 HELIX 25 25 ARG B 102 GLY B 107 1 6 HELIX 26 26 LYS B 125 GLY B 130 1 6 HELIX 27 27 ASP B 131 TRP B 135 5 5 HELIX 28 28 PRO B 139 THR B 147 1 9 HELIX 29 29 ALA B 162 VAL B 166 5 5 HELIX 30 30 ARG B 179 THR B 193 1 15 HELIX 31 31 ASP B 194 GLN B 197 5 4 HELIX 32 32 GLU B 207 GLY B 217 1 11 HELIX 33 33 SER B 220 ASP B 244 1 25 HELIX 34 34 THR B 246 ALA B 248 5 3 HELIX 35 35 VAL B 271 ALA B 275 1 5 HELIX 36 36 GLN B 297 LEU B 306 1 10 HELIX 37 37 ALA B 318 LEU B 320 5 3 HELIX 38 38 PRO B 321 GLN B 325 5 5 HELIX 39 39 PHE B 347 ARG B 354 1 8 HELIX 40 40 LEU B 369 ARG B 373 5 5 HELIX 41 41 ASP B 396 GLY B 406 1 11 HELIX 42 42 LEU B 419 LEU B 423 5 5 SHEET 1 A 7 HIS A 150 THR A 153 0 SHEET 2 A 7 ASN A 199 PHE A 206 1 O THR A 203 N ALA A 152 SHEET 3 A 7 ALA A 47 ILE A 53 1 N LEU A 50 O VAL A 202 SHEET 4 A 7 THR A 250 VAL A 255 1 O ASN A 251 N LEU A 49 SHEET 5 A 7 PHE A 376 GLN A 379 -1 O LEU A 377 N VAL A 254 SHEET 6 A 7 VAL A 77 ALA A 79 -1 N VAL A 77 O ALA A 378 SHEET 7 A 7 LYS A 387 LEU A 389 1 O LEU A 389 N ARG A 78 SHEET 1 B 2 MET A 82 ALA A 83 0 SHEET 2 B 2 PHE A 392 ASP A 393 1 O PHE A 392 N ALA A 83 SHEET 1 C 2 MET A 113 ASP A 115 0 SHEET 2 C 2 GLY A 119 PHE A 121 -1 O PHE A 121 N MET A 113 SHEET 1 D 2 ALA A 261 VAL A 263 0 SHEET 2 D 2 ARG A 360 SER A 362 -1 O SER A 362 N ALA A 261 SHEET 1 E 2 ALA A 268 SER A 270 0 SHEET 2 E 2 ASP A 344 LEU A 346 1 O LEU A 346 N ILE A 269 SHEET 1 F 5 ALA A 280 ALA A 282 0 SHEET 2 F 5 VAL A 288 PRO A 293 -1 O GLU A 292 N THR A 281 SHEET 3 F 5 LEU A 335 MET A 339 -1 O CYS A 337 N ILE A 289 SHEET 4 F 5 TYR A 312 ARG A 316 -1 N TRP A 315 O VAL A 336 SHEET 5 F 5 GLY A 307 ALA A 308 -1 N GLY A 307 O CYS A 314 SHEET 1 G 7 HIS B 150 THR B 153 0 SHEET 2 G 7 ASN B 199 PHE B 206 1 O THR B 203 N ALA B 152 SHEET 3 G 7 ALA B 47 ILE B 53 1 N SER B 52 O LEU B 204 SHEET 4 G 7 THR B 250 VAL B 255 1 O ASN B 251 N ALA B 47 SHEET 5 G 7 PHE B 376 GLN B 379 -1 O LEU B 377 N VAL B 254 SHEET 6 G 7 VAL B 77 ALA B 79 -1 N VAL B 77 O ALA B 378 SHEET 7 G 7 LYS B 387 LEU B 389 1 O LEU B 389 N ARG B 78 SHEET 1 H 2 MET B 82 ALA B 83 0 SHEET 2 H 2 PHE B 392 ASP B 393 1 O PHE B 392 N ALA B 83 SHEET 1 I 2 MET B 113 ASP B 115 0 SHEET 2 I 2 GLY B 119 PHE B 121 -1 O PHE B 121 N MET B 113 SHEET 1 J 2 ALA B 261 VAL B 263 0 SHEET 2 J 2 ARG B 360 SER B 362 -1 O SER B 362 N ALA B 261 SHEET 1 K 2 ALA B 268 SER B 270 0 SHEET 2 K 2 ASP B 344 LEU B 346 1 O LEU B 346 N ILE B 269 SHEET 1 L 5 ALA B 280 ALA B 282 0 SHEET 2 L 5 VAL B 288 PRO B 293 -1 O GLU B 292 N THR B 281 SHEET 3 L 5 LEU B 335 MET B 339 -1 O LEU B 335 N PHE B 291 SHEET 4 L 5 TYR B 312 ARG B 316 -1 N TRP B 315 O VAL B 336 SHEET 5 L 5 GLY B 307 ALA B 308 -1 N GLY B 307 O CYS B 314 SSBOND 1 CYS A 314 CYS A 337 1555 1555 2.06 SSBOND 2 CYS B 314 CYS B 337 1555 1555 2.06 LINK OD1 ASP A 54 ZN ZN A1000 1555 1555 1.95 LINK OG1 THR A 90 ZN ZN A1000 1555 1555 2.00 LINK OD2 ASP A 210 ZN ZN A1001 1555 1555 2.43 LINK OD1 ASP A 210 ZN ZN A1001 1555 1555 2.21 LINK NE2 HIS A 214 ZN ZN A1001 1555 1555 2.04 LINK OD2 ASP A 257 ZN ZN A1000 1555 1555 2.04 LINK NE2 HIS A 258 ZN ZN A1000 1555 1555 2.09 LINK NE2 HIS A 363 ZN ZN A1001 1555 1555 2.09 LINK ZN ZN A1001 O HOH A1277 1555 1555 1.96 LINK OD1 ASP B 54 ZN ZN B1002 1555 1555 1.98 LINK OG1 THR B 90 ZN ZN B1002 1555 1555 2.08 LINK OD1 ASP B 210 ZN ZN B1003 1555 1555 2.17 LINK OD2 ASP B 210 ZN ZN B1003 1555 1555 2.50 LINK NE2 HIS B 214 ZN ZN B1003 1555 1555 2.03 LINK OD2 ASP B 257 ZN ZN B1002 1555 1555 2.06 LINK NE2 HIS B 258 ZN ZN B1002 1555 1555 2.06 LINK NE2 HIS B 363 ZN ZN B1003 1555 1555 2.03 LINK ZN ZN B1003 O HOH B1340 1555 1555 2.05 CISPEP 1 TYR A 86 PRO A 87 0 -2.04 CISPEP 2 TYR B 86 PRO B 87 0 -2.24 SITE 1 AC1 4 ASP A 54 THR A 90 ASP A 257 HIS A 258 SITE 1 AC2 4 ASP A 210 HIS A 214 HIS A 363 HOH A1277 SITE 1 AC3 4 ASP B 54 THR B 90 ASP B 257 HIS B 258 SITE 1 AC4 4 ASP B 210 HIS B 214 HIS B 363 HOH B1340 CRYST1 65.683 78.692 129.527 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015225 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012708 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007720 0.00000