HEADER HYDROLASE 26-APR-06 2GSU TITLE STRUCTURE OF XAC NUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE IN TITLE 2 COMPLEX WITH AMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHODIESTERASE-NUCLEOTIDE PYROPHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES (44-425); COMPND 5 EC: 3.6.1.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOMONAS AXONOPODIS PV. CITRI STR. 306; SOURCE 3 ORGANISM_TAXID: 190486; SOURCE 4 STRAIN: PV. CITRI STR. 306; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA BETA, NPP, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.G.ZALATAN,T.D.FENN,A.T.BRUNGER,D.HERSCHLAG REVDAT 5 18-OCT-17 2GSU 1 REMARK REVDAT 4 13-JUL-11 2GSU 1 VERSN REVDAT 3 24-FEB-09 2GSU 1 VERSN REVDAT 2 22-AUG-06 2GSU 1 JRNL REVDAT 1 01-AUG-06 2GSU 0 JRNL AUTH J.G.ZALATAN,T.D.FENN,A.T.BRUNGER,D.HERSCHLAG JRNL TITL STRUCTURAL AND FUNCTIONAL COMPARISONS OF NUCLEOTIDE JRNL TITL 2 PYROPHOSPHATASE/PHOSPHODIESTERASE AND ALKALINE PHOSPHATASE: JRNL TITL 3 IMPLICATIONS FOR MECHANISM AND EVOLUTION JRNL REF BIOCHEMISTRY V. 45 9788 2006 JRNL REFN ISSN 0006-2960 JRNL PMID 16893180 JRNL DOI 10.1021/BI060847T REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 3 NUMBER OF REFLECTIONS : 39774 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.303 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2128 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1914 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 60.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.3200 REMARK 3 BIN FREE R VALUE SET COUNT : 102 REMARK 3 BIN FREE R VALUE : 0.4230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5882 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 504 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.13000 REMARK 3 B22 (A**2) : 0.32000 REMARK 3 B33 (A**2) : -0.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.333 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.256 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.231 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.185 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.893 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6149 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 5491 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8410 ; 1.356 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12694 ; 0.833 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 774 ; 6.673 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 280 ;34.449 ;22.429 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 898 ;14.003 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 60 ;13.636 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 887 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7018 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1304 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1504 ; 0.218 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 5962 ; 0.194 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2915 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 3598 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 440 ; 0.211 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 3 ; 0.023 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 10 ; 0.108 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 35 ; 0.220 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 148 ; 0.254 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 24 ; 0.210 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4876 ; 0.557 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1564 ; 0.132 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6139 ; 0.690 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2707 ; 1.130 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2271 ; 1.617 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 44 A 425 4 REMARK 3 1 B 44 B 425 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 5657 ; 0.30 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 5657 ; 0.40 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 44 A 425 REMARK 3 ORIGIN FOR THE GROUP (A): 23.9846 39.6746 27.0629 REMARK 3 T TENSOR REMARK 3 T11: -0.0035 T22: -0.1422 REMARK 3 T33: -0.1038 T12: -0.0098 REMARK 3 T13: -0.0043 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 1.9969 L22: 0.5836 REMARK 3 L33: 0.8775 L12: 0.0674 REMARK 3 L13: 0.1746 L23: 0.0054 REMARK 3 S TENSOR REMARK 3 S11: -0.0354 S12: 0.2304 S13: 0.0581 REMARK 3 S21: -0.0648 S22: 0.0336 S23: 0.0536 REMARK 3 S31: -0.0088 S32: -0.0615 S33: 0.0018 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 44 B 425 REMARK 3 ORIGIN FOR THE GROUP (A): 41.0514 38.9860 60.4392 REMARK 3 T TENSOR REMARK 3 T11: -0.0125 T22: -0.1021 REMARK 3 T33: -0.1188 T12: -0.0104 REMARK 3 T13: -0.0049 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 1.5151 L22: 0.7026 REMARK 3 L33: 0.5879 L12: -0.1390 REMARK 3 L13: -0.0541 L23: 0.0434 REMARK 3 S TENSOR REMARK 3 S11: -0.0155 S12: -0.1368 S13: 0.0223 REMARK 3 S21: 0.0560 S22: 0.0122 S23: -0.0439 REMARK 3 S31: -0.0029 S32: 0.0130 S33: 0.0034 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2GSU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000037506. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : BOS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41903 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.14200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 60.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS HCL, 19% PEG 3350, PH REMARK 280 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.78900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.74500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.22500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.74500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.78900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.22500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DIMER IN ASYMMETRIC UNIT, LIKELY FUNCTIONAL AS A MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 40 REMARK 465 SER A 41 REMARK 465 ALA A 42 REMARK 465 SER A 43 REMARK 465 PRO A 426 REMARK 465 PRO A 427 REMARK 465 ALA A 428 REMARK 465 PRO A 429 REMARK 465 ASP A 430 REMARK 465 ALA A 431 REMARK 465 ARG A 432 REMARK 465 ALA B 40 REMARK 465 SER B 41 REMARK 465 ALA B 42 REMARK 465 SER B 43 REMARK 465 PRO B 426 REMARK 465 PRO B 427 REMARK 465 ALA B 428 REMARK 465 PRO B 429 REMARK 465 ASP B 430 REMARK 465 ALA B 431 REMARK 465 ARG B 432 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 83 O HOH A 1245 2.02 REMARK 500 O TRP A 154 O HOH A 1237 2.06 REMARK 500 O HOH A 1026 O HOH A 1248 2.10 REMARK 500 OE1 GLU B 75 O HOH B 1229 2.16 REMARK 500 NE2 GLN B 379 O HOH B 1092 2.16 REMARK 500 O TRP B 154 O HOH B 1224 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 197 47.22 -104.69 REMARK 500 HIS A 216 -0.74 -141.26 REMARK 500 HIS A 258 -179.98 -174.04 REMARK 500 HIS A 267 44.83 -95.38 REMARK 500 ALA A 355 96.60 -40.26 REMARK 500 ARG A 357 -72.50 -162.42 REMARK 500 HIS A 363 -153.41 -120.48 REMARK 500 ASP A 366 111.60 -29.07 REMARK 500 PRO B 157 104.60 -42.21 REMARK 500 GLN B 197 37.28 -90.89 REMARK 500 HIS B 267 49.52 -98.07 REMARK 500 GLN B 287 -24.33 -142.29 REMARK 500 ARG B 357 -80.53 -160.14 REMARK 500 HIS B 363 -148.97 -129.09 REMARK 500 ASP B 366 115.56 -36.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1000 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 54 OD1 REMARK 620 2 THR A 90 OG1 127.3 REMARK 620 3 ASP A 257 OD2 95.8 102.1 REMARK 620 4 HIS A 258 NE2 114.5 112.7 95.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 AMP A1004 O1P REMARK 620 2 HIS A 363 NE2 99.6 REMARK 620 3 ASP A 210 OD2 79.6 123.5 REMARK 620 4 HIS A 214 NE2 139.5 111.9 101.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 258 NE2 REMARK 620 2 ASP B 257 OD2 104.9 REMARK 620 3 THR B 90 OG1 111.5 108.0 REMARK 620 4 ASP B 54 OD1 105.0 105.2 121.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1003 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B1204 O REMARK 620 2 HIS B 214 NE2 73.4 REMARK 620 3 ASP B 210 OD1 172.9 103.3 REMARK 620 4 AMP B1005 O3P 61.9 89.4 124.8 REMARK 620 5 AMP B1005 O1P 83.5 151.7 101.3 64.9 REMARK 620 6 HIS B 363 NE2 67.2 101.1 107.8 122.2 84.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP B 1005 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GSN RELATED DB: PDB REMARK 900 RELATED ID: 2GSO RELATED DB: PDB DBREF 2GSU A 40 432 UNP Q8PIS1 Q8PIS1_XANAC 40 432 DBREF 2GSU B 40 432 UNP Q8PIS1 Q8PIS1_XANAC 40 432 SEQRES 1 A 393 ALA SER ALA SER THR PRO HIS ALA LEU LEU LEU ILE SER SEQRES 2 A 393 ILE ASP GLY LEU ARG ALA ASP MET LEU ASP ARG GLY ILE SEQRES 3 A 393 THR PRO ASN LEU SER HIS LEU ALA ARG GLU GLY VAL ARG SEQRES 4 A 393 ALA ARG TRP MET ALA PRO SER TYR PRO SER LEU THR PHE SEQRES 5 A 393 PRO ASN HIS TYR THR LEU VAL THR GLY LEU ARG PRO ASP SEQRES 6 A 393 HIS HIS GLY ILE VAL HIS ASN SER MET ARG ASP PRO THR SEQRES 7 A 393 LEU GLY GLY PHE TRP LEU SER LYS SER GLU ALA VAL GLY SEQRES 8 A 393 ASP ALA ARG TRP TRP GLY GLY GLU PRO VAL TRP VAL GLY SEQRES 9 A 393 VAL GLU ASN THR GLY GLN HIS ALA ALA THR TRP SER TRP SEQRES 10 A 393 PRO GLY SER GLU ALA ALA ILE LYS GLY VAL ARG PRO SER SEQRES 11 A 393 GLN TRP ARG HIS TYR GLN LYS GLY VAL ARG LEU ASP THR SEQRES 12 A 393 ARG VAL ASP ALA VAL ARG GLY TRP LEU ALA THR ASP GLY SEQRES 13 A 393 ALA GLN ARG ASN ARG LEU VAL THR LEU TYR PHE GLU HIS SEQRES 14 A 393 VAL ASP GLU ALA GLY HIS ASP HIS GLY PRO GLU SER ARG SEQRES 15 A 393 GLN TYR ALA ASP ALA VAL ARG ALA VAL ASP ALA ALA ILE SEQRES 16 A 393 GLY ARG LEU LEU ALA GLY MET GLN ARG ASP GLY THR ARG SEQRES 17 A 393 ALA ARG THR ASN ILE ILE VAL VAL SER ASP HIS GLY MET SEQRES 18 A 393 ALA GLU VAL ALA PRO GLY HIS ALA ILE SER VAL GLU ASP SEQRES 19 A 393 ILE ALA PRO PRO GLN ILE ALA THR ALA ILE THR ASP GLY SEQRES 20 A 393 GLN VAL ILE GLY PHE GLU PRO LEU PRO GLY GLN GLN ALA SEQRES 21 A 393 ALA ALA GLU ALA SER VAL LEU GLY ALA HIS ASP HIS TYR SEQRES 22 A 393 ASP CYS TRP ARG LYS ALA GLU LEU PRO ALA ARG TRP GLN SEQRES 23 A 393 TYR GLY SER HIS PRO ARG ILE PRO SER LEU VAL CYS GLN SEQRES 24 A 393 MET HIS GLU GLY TRP ASP ALA LEU PHE PRO ASP LYS LEU SEQRES 25 A 393 ALA LYS ARG ALA GLN ARG GLY THR ARG GLY SER HIS GLY SEQRES 26 A 393 TYR ASP PRO ALA LEU PRO SER MET ARG ALA VAL PHE LEU SEQRES 27 A 393 ALA GLN GLY PRO ASP LEU ALA GLN GLY LYS THR LEU PRO SEQRES 28 A 393 GLY PHE ASP ASN VAL ASP VAL TYR ALA LEU MET SER ARG SEQRES 29 A 393 LEU LEU GLY ILE PRO ALA ALA PRO ASN ASP GLY ASN PRO SEQRES 30 A 393 ALA THR LEU LEU PRO ALA LEU ARG MET PRO PRO ALA PRO SEQRES 31 A 393 ASP ALA ARG SEQRES 1 B 393 ALA SER ALA SER THR PRO HIS ALA LEU LEU LEU ILE SER SEQRES 2 B 393 ILE ASP GLY LEU ARG ALA ASP MET LEU ASP ARG GLY ILE SEQRES 3 B 393 THR PRO ASN LEU SER HIS LEU ALA ARG GLU GLY VAL ARG SEQRES 4 B 393 ALA ARG TRP MET ALA PRO SER TYR PRO SER LEU THR PHE SEQRES 5 B 393 PRO ASN HIS TYR THR LEU VAL THR GLY LEU ARG PRO ASP SEQRES 6 B 393 HIS HIS GLY ILE VAL HIS ASN SER MET ARG ASP PRO THR SEQRES 7 B 393 LEU GLY GLY PHE TRP LEU SER LYS SER GLU ALA VAL GLY SEQRES 8 B 393 ASP ALA ARG TRP TRP GLY GLY GLU PRO VAL TRP VAL GLY SEQRES 9 B 393 VAL GLU ASN THR GLY GLN HIS ALA ALA THR TRP SER TRP SEQRES 10 B 393 PRO GLY SER GLU ALA ALA ILE LYS GLY VAL ARG PRO SER SEQRES 11 B 393 GLN TRP ARG HIS TYR GLN LYS GLY VAL ARG LEU ASP THR SEQRES 12 B 393 ARG VAL ASP ALA VAL ARG GLY TRP LEU ALA THR ASP GLY SEQRES 13 B 393 ALA GLN ARG ASN ARG LEU VAL THR LEU TYR PHE GLU HIS SEQRES 14 B 393 VAL ASP GLU ALA GLY HIS ASP HIS GLY PRO GLU SER ARG SEQRES 15 B 393 GLN TYR ALA ASP ALA VAL ARG ALA VAL ASP ALA ALA ILE SEQRES 16 B 393 GLY ARG LEU LEU ALA GLY MET GLN ARG ASP GLY THR ARG SEQRES 17 B 393 ALA ARG THR ASN ILE ILE VAL VAL SER ASP HIS GLY MET SEQRES 18 B 393 ALA GLU VAL ALA PRO GLY HIS ALA ILE SER VAL GLU ASP SEQRES 19 B 393 ILE ALA PRO PRO GLN ILE ALA THR ALA ILE THR ASP GLY SEQRES 20 B 393 GLN VAL ILE GLY PHE GLU PRO LEU PRO GLY GLN GLN ALA SEQRES 21 B 393 ALA ALA GLU ALA SER VAL LEU GLY ALA HIS ASP HIS TYR SEQRES 22 B 393 ASP CYS TRP ARG LYS ALA GLU LEU PRO ALA ARG TRP GLN SEQRES 23 B 393 TYR GLY SER HIS PRO ARG ILE PRO SER LEU VAL CYS GLN SEQRES 24 B 393 MET HIS GLU GLY TRP ASP ALA LEU PHE PRO ASP LYS LEU SEQRES 25 B 393 ALA LYS ARG ALA GLN ARG GLY THR ARG GLY SER HIS GLY SEQRES 26 B 393 TYR ASP PRO ALA LEU PRO SER MET ARG ALA VAL PHE LEU SEQRES 27 B 393 ALA GLN GLY PRO ASP LEU ALA GLN GLY LYS THR LEU PRO SEQRES 28 B 393 GLY PHE ASP ASN VAL ASP VAL TYR ALA LEU MET SER ARG SEQRES 29 B 393 LEU LEU GLY ILE PRO ALA ALA PRO ASN ASP GLY ASN PRO SEQRES 30 B 393 ALA THR LEU LEU PRO ALA LEU ARG MET PRO PRO ALA PRO SEQRES 31 B 393 ASP ALA ARG HET ZN A1000 1 HET ZN A1001 1 HET AMP A1004 23 HET ZN B1002 1 HET ZN B1003 1 HET AMP B1005 23 HETNAM ZN ZINC ION HETNAM AMP ADENOSINE MONOPHOSPHATE FORMUL 3 ZN 4(ZN 2+) FORMUL 5 AMP 2(C10 H14 N5 O7 P) FORMUL 9 HOH *504(H2 O) HELIX 1 1 ARG A 57 ASP A 62 5 6 HELIX 2 2 THR A 66 GLY A 76 1 11 HELIX 3 3 LEU A 89 GLY A 100 1 12 HELIX 4 4 ARG A 102 GLY A 107 1 6 HELIX 5 5 LYS A 125 GLY A 130 1 6 HELIX 6 6 ASP A 131 TRP A 135 5 5 HELIX 7 7 PRO A 139 ASN A 146 1 8 HELIX 8 8 ALA A 162 VAL A 166 5 5 HELIX 9 9 ARG A 179 THR A 193 1 15 HELIX 10 10 ASP A 194 ARG A 198 5 5 HELIX 11 11 GLU A 207 GLY A 217 1 11 HELIX 12 12 SER A 220 ASP A 244 1 25 HELIX 13 13 THR A 246 ALA A 248 5 3 HELIX 14 14 GLU A 272 ILE A 274 5 3 HELIX 15 15 GLN A 297 LEU A 306 1 10 HELIX 16 16 ALA A 318 LEU A 320 5 3 HELIX 17 17 PRO A 321 GLN A 325 5 5 HELIX 18 18 PHE A 347 ARG A 354 1 8 HELIX 19 19 LEU A 369 ARG A 373 5 5 HELIX 20 20 ASP A 396 LEU A 405 1 10 HELIX 21 21 LEU A 419 LEU A 423 5 5 HELIX 22 22 ARG B 57 ARG B 63 5 7 HELIX 23 23 THR B 66 GLY B 76 1 11 HELIX 24 24 LEU B 89 GLY B 100 1 12 HELIX 25 25 ARG B 102 GLY B 107 1 6 HELIX 26 26 LYS B 125 GLY B 130 1 6 HELIX 27 27 ASP B 131 TRP B 135 5 5 HELIX 28 28 PRO B 139 THR B 147 1 9 HELIX 29 29 ALA B 162 VAL B 166 5 5 HELIX 30 30 ARG B 179 THR B 193 1 15 HELIX 31 31 ASP B 194 GLN B 197 5 4 HELIX 32 32 GLU B 207 GLY B 217 1 11 HELIX 33 33 SER B 220 ASP B 244 1 25 HELIX 34 34 THR B 246 ALA B 248 5 3 HELIX 35 35 GLU B 272 ILE B 274 5 3 HELIX 36 36 GLN B 297 LEU B 306 1 10 HELIX 37 37 PRO B 321 GLN B 325 5 5 HELIX 38 38 PHE B 347 ARG B 354 1 8 HELIX 39 39 LEU B 369 ARG B 373 5 5 HELIX 40 40 ASP B 396 LEU B 405 1 10 HELIX 41 41 LEU B 419 LEU B 423 5 5 SHEET 1 A 7 ALA A 151 THR A 153 0 SHEET 2 A 7 LEU A 201 PHE A 206 1 O THR A 203 N ALA A 152 SHEET 3 A 7 ALA A 47 ILE A 53 1 N SER A 52 O LEU A 204 SHEET 4 A 7 THR A 250 VAL A 255 1 O ASN A 251 N ALA A 47 SHEET 5 A 7 PHE A 376 GLN A 379 -1 O LEU A 377 N VAL A 254 SHEET 6 A 7 VAL A 77 ALA A 79 -1 N VAL A 77 O ALA A 378 SHEET 7 A 7 LYS A 387 LEU A 389 1 O LEU A 389 N ARG A 78 SHEET 1 B 2 MET A 82 ALA A 83 0 SHEET 2 B 2 PHE A 392 ASP A 393 1 O PHE A 392 N ALA A 83 SHEET 1 C 2 MET A 113 ASP A 115 0 SHEET 2 C 2 GLY A 119 PHE A 121 -1 O PHE A 121 N MET A 113 SHEET 1 D 2 ALA A 261 VAL A 263 0 SHEET 2 D 2 ARG A 360 SER A 362 -1 O SER A 362 N ALA A 261 SHEET 1 E 2 ALA A 268 SER A 270 0 SHEET 2 E 2 ASP A 344 LEU A 346 1 O ASP A 344 N ILE A 269 SHEET 1 F 5 ALA A 280 ALA A 282 0 SHEET 2 F 5 VAL A 288 PRO A 293 -1 O GLU A 292 N THR A 281 SHEET 3 F 5 LEU A 335 MET A 339 -1 O CYS A 337 N ILE A 289 SHEET 4 F 5 TYR A 312 ARG A 316 -1 N ASP A 313 O GLN A 338 SHEET 5 F 5 GLY A 307 ALA A 308 -1 N GLY A 307 O CYS A 314 SHEET 1 G 7 HIS B 150 THR B 153 0 SHEET 2 G 7 ASN B 199 PHE B 206 1 O THR B 203 N ALA B 152 SHEET 3 G 7 ALA B 47 ILE B 53 1 N LEU B 50 O LEU B 204 SHEET 4 G 7 THR B 250 VAL B 255 1 O ASN B 251 N LEU B 49 SHEET 5 G 7 PHE B 376 GLN B 379 -1 O GLN B 379 N ILE B 252 SHEET 6 G 7 VAL B 77 ALA B 79 -1 N VAL B 77 O ALA B 378 SHEET 7 G 7 LYS B 387 LEU B 389 1 O LEU B 389 N ARG B 78 SHEET 1 H 2 MET B 82 ALA B 83 0 SHEET 2 H 2 PHE B 392 ASP B 393 1 O PHE B 392 N ALA B 83 SHEET 1 I 2 MET B 113 ASP B 115 0 SHEET 2 I 2 GLY B 119 PHE B 121 -1 O PHE B 121 N MET B 113 SHEET 1 J 2 ALA B 261 VAL B 263 0 SHEET 2 J 2 ARG B 360 SER B 362 -1 O ARG B 360 N VAL B 263 SHEET 1 K 2 ALA B 268 SER B 270 0 SHEET 2 K 2 ASP B 344 LEU B 346 1 O LEU B 346 N ILE B 269 SHEET 1 L 5 ALA B 280 ALA B 282 0 SHEET 2 L 5 VAL B 288 PRO B 293 -1 O GLU B 292 N THR B 281 SHEET 3 L 5 LEU B 335 MET B 339 -1 O CYS B 337 N ILE B 289 SHEET 4 L 5 TYR B 312 ARG B 316 -1 N ASP B 313 O GLN B 338 SHEET 5 L 5 GLY B 307 HIS B 309 -1 N HIS B 309 O TYR B 312 SSBOND 1 CYS A 314 CYS A 337 1555 1555 2.05 SSBOND 2 CYS B 314 CYS B 337 1555 1555 2.02 LINK ZN ZN A1000 OD1 ASP A 54 1555 1555 1.89 LINK ZN ZN A1000 OG1 THR A 90 1555 1555 1.81 LINK ZN ZN A1000 OD2 ASP A 257 1555 1555 2.04 LINK ZN ZN A1000 NE2 HIS A 258 1555 1555 2.15 LINK ZN ZN A1001 O1P AMP A1004 1555 1555 1.97 LINK ZN ZN A1001 NE2 HIS A 363 1555 1555 1.95 LINK ZN ZN A1001 OD2 ASP A 210 1555 1555 2.11 LINK ZN ZN A1001 NE2 HIS A 214 1555 1555 1.99 LINK OG1 THR B 90 O1P AMP B1005 1555 1555 1.84 LINK ZN ZN B1002 NE2 HIS B 258 1555 1555 2.01 LINK ZN ZN B1002 OD2 ASP B 257 1555 1555 1.97 LINK ZN ZN B1002 OG1 THR B 90 1555 1555 2.26 LINK ZN ZN B1002 OD1 ASP B 54 1555 1555 1.87 LINK ZN ZN B1003 O HOH B1204 1555 1555 2.69 LINK ZN ZN B1003 NE2 HIS B 214 1555 1555 2.13 LINK ZN ZN B1003 OD1 ASP B 210 1555 1555 1.96 LINK ZN ZN B1003 O3P AMP B1005 1555 1555 1.95 LINK ZN ZN B1003 O1P AMP B1005 1555 1555 2.61 LINK ZN ZN B1003 NE2 HIS B 363 1555 1555 2.18 CISPEP 1 TYR A 86 PRO A 87 0 -0.66 CISPEP 2 TYR B 86 PRO B 87 0 0.39 SITE 1 AC1 5 ASP A 54 THR A 90 ASP A 257 HIS A 258 SITE 2 AC1 5 AMP A1004 SITE 1 AC2 4 ASP A 210 HIS A 214 HIS A 363 AMP A1004 SITE 1 AC3 5 ASP B 54 THR B 90 ASP B 257 HIS B 258 SITE 2 AC3 5 AMP B1005 SITE 1 AC4 5 ASP B 210 HIS B 214 HIS B 363 AMP B1005 SITE 2 AC4 5 HOH B1204 SITE 1 AC5 13 THR A 90 PHE A 91 ASN A 111 LEU A 123 SITE 2 AC5 13 SER A 155 TYR A 174 TYR A 205 ASP A 210 SITE 3 AC5 13 GLU A 211 HIS A 363 ZN A1000 ZN A1001 SITE 4 AC5 13 HOH A1257 SITE 1 AC6 15 THR B 90 PHE B 91 ASN B 111 LEU B 123 SITE 2 AC6 15 SER B 155 TYR B 174 LYS B 176 TYR B 205 SITE 3 AC6 15 ASP B 210 GLU B 211 HIS B 214 HIS B 363 SITE 4 AC6 15 ZN B1002 ZN B1003 HOH B1204 CRYST1 65.578 78.450 129.490 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015249 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012747 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007723 0.00000