data_2GSV # _entry.id 2GSV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.286 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2GSV RCSB RCSB037507 WWPDB D_1000037507 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id SR478 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2GSV _pdbx_database_status.recvd_initial_deposition_date 2006-04-26 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Forouhar, F.' 1 'Su, M.' 2 'Jayaraman, S.' 3 'Wang, D.' 4 'Fang, Y.' 5 'Cunningham, K.' 6 'Conover, K.' 7 'Ma, L.-C.' 8 'Xiao, R.' 9 'Acton, T.B.' 10 'Montelione, G.T.' 11 'Tong, L.' 12 'Hunt, J.F.' 13 'Northeast Structural Genomics Consortium (NESG)' 14 # _citation.id primary _citation.title 'Crystal Structure of the Hypothetical Protein YvfG from Bacillus subtilis, Northeast Structural Genomics Target SR478' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Forouhar, F.' 1 primary 'Su, M.' 2 primary 'Jayaraman, S.' 3 primary 'Wang, D.' 4 primary 'Fang, Y.' 5 primary 'Cunningham, K.' 6 primary 'Conover, K.' 7 primary 'Ma, L.-C.' 8 primary 'Xiao, R.' 9 primary 'Acton, T.B.' 10 primary 'Montelione, G.T.' 11 primary 'Tong, L.' 12 primary 'Hunt, J.F.' 13 # _cell.entry_id 2GSV _cell.length_a 51.048 _cell.length_b 31.645 _cell.length_c 53.357 _cell.angle_alpha 90.00 _cell.angle_beta 94.63 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2GSV _symmetry.space_group_name_H-M 'P 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 3 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Hypothetical protein yvfG' 9696.514 2 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 3 water nat water 18.015 75 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)SELFSVPYFIENLKQHIE(MSE)NQSEDKIHA(MSE)NSYYRSVVSTLVQDQLTKNAVVLKRIQHLDEAYNKVKR GESKLEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can MSELFSVPYFIENLKQHIEMNQSEDKIHAMNSYYRSVVSTLVQDQLTKNAVVLKRIQHLDEAYNKVKRGESKLEHHHHHH _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier SR478 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 SER n 1 3 GLU n 1 4 LEU n 1 5 PHE n 1 6 SER n 1 7 VAL n 1 8 PRO n 1 9 TYR n 1 10 PHE n 1 11 ILE n 1 12 GLU n 1 13 ASN n 1 14 LEU n 1 15 LYS n 1 16 GLN n 1 17 HIS n 1 18 ILE n 1 19 GLU n 1 20 MSE n 1 21 ASN n 1 22 GLN n 1 23 SER n 1 24 GLU n 1 25 ASP n 1 26 LYS n 1 27 ILE n 1 28 HIS n 1 29 ALA n 1 30 MSE n 1 31 ASN n 1 32 SER n 1 33 TYR n 1 34 TYR n 1 35 ARG n 1 36 SER n 1 37 VAL n 1 38 VAL n 1 39 SER n 1 40 THR n 1 41 LEU n 1 42 VAL n 1 43 GLN n 1 44 ASP n 1 45 GLN n 1 46 LEU n 1 47 THR n 1 48 LYS n 1 49 ASN n 1 50 ALA n 1 51 VAL n 1 52 VAL n 1 53 LEU n 1 54 LYS n 1 55 ARG n 1 56 ILE n 1 57 GLN n 1 58 HIS n 1 59 LEU n 1 60 ASP n 1 61 GLU n 1 62 ALA n 1 63 TYR n 1 64 ASN n 1 65 LYS n 1 66 VAL n 1 67 LYS n 1 68 ARG n 1 69 GLY n 1 70 GLU n 1 71 SER n 1 72 LYS n 1 73 LEU n 1 74 GLU n 1 75 HIS n 1 76 HIS n 1 77 HIS n 1 78 HIS n 1 79 HIS n 1 80 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Bacillus _entity_src_gen.pdbx_gene_src_gene yvfG _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 168 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus subtilis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1423 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)+ Magic' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET21 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code YVFG_BACSU _struct_ref.pdbx_db_accession P71066 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2GSV A 1 ? 72 ? P71066 1 ? 72 ? 1 72 2 1 2GSV B 1 ? 72 ? P71066 1 ? 72 ? 1 72 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2GSV MSE A 1 ? UNP P71066 MET 1 'MODIFIED RESIDUE' 1 1 1 2GSV MSE A 20 ? UNP P71066 MET 20 'MODIFIED RESIDUE' 20 2 1 2GSV MSE A 30 ? UNP P71066 MET 30 'MODIFIED RESIDUE' 30 3 1 2GSV LEU A 73 ? UNP P71066 ? ? 'CLONING ARTIFACT' 73 4 1 2GSV GLU A 74 ? UNP P71066 ? ? 'CLONING ARTIFACT' 74 5 1 2GSV HIS A 75 ? UNP P71066 ? ? 'EXPRESSION TAG' 75 6 1 2GSV HIS A 76 ? UNP P71066 ? ? 'EXPRESSION TAG' 76 7 1 2GSV HIS A 77 ? UNP P71066 ? ? 'EXPRESSION TAG' 77 8 1 2GSV HIS A 78 ? UNP P71066 ? ? 'EXPRESSION TAG' 78 9 1 2GSV HIS A 79 ? UNP P71066 ? ? 'EXPRESSION TAG' 79 10 1 2GSV HIS A 80 ? UNP P71066 ? ? 'EXPRESSION TAG' 80 11 2 2GSV MSE B 1 ? UNP P71066 MET 1 'MODIFIED RESIDUE' 1 12 2 2GSV MSE B 20 ? UNP P71066 MET 20 'MODIFIED RESIDUE' 20 13 2 2GSV MSE B 30 ? UNP P71066 MET 30 'MODIFIED RESIDUE' 30 14 2 2GSV LEU B 73 ? UNP P71066 ? ? 'CLONING ARTIFACT' 73 15 2 2GSV GLU B 74 ? UNP P71066 ? ? 'CLONING ARTIFACT' 74 16 2 2GSV HIS B 75 ? UNP P71066 ? ? 'EXPRESSION TAG' 75 17 2 2GSV HIS B 76 ? UNP P71066 ? ? 'EXPRESSION TAG' 76 18 2 2GSV HIS B 77 ? UNP P71066 ? ? 'EXPRESSION TAG' 77 19 2 2GSV HIS B 78 ? UNP P71066 ? ? 'EXPRESSION TAG' 78 20 2 2GSV HIS B 79 ? UNP P71066 ? ? 'EXPRESSION TAG' 79 21 2 2GSV HIS B 80 ? UNP P71066 ? ? 'EXPRESSION TAG' 80 22 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2GSV _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.21 _exptl_crystal.density_percent_sol 44.46 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '10mM Tris, 16% PEG3350, 180mM ammonium sulfate, 5mM DTT, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2006-04-06 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X4A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X4A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.979 # _reflns.entry_id 2GSV _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 26.87 _reflns.d_resolution_high 1.9 _reflns.number_obs 25914 _reflns.number_all 26175 _reflns.percent_possible_obs 99.0 _reflns.pdbx_Rmerge_I_obs 0.084 _reflns.pdbx_Rsym_value 0.067 _reflns.pdbx_netI_over_sigmaI 14.98 _reflns.B_iso_Wilson_estimate 12.1 _reflns.pdbx_redundancy 3.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.9 _reflns_shell.d_res_low 1.97 _reflns_shell.percent_possible_all 98.3 _reflns_shell.Rmerge_I_obs 0.353 _reflns_shell.pdbx_Rsym_value 0.284 _reflns_shell.meanI_over_sigI_obs 3.4 _reflns_shell.pdbx_redundancy 3.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2645 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2GSV _refine.ls_number_reflns_obs 20496 _refine.ls_number_reflns_all 26175 _refine.pdbx_ls_sigma_I 2.0 _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF 770888.39 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 26.87 _refine.ls_d_res_high 1.90 _refine.ls_percent_reflns_obs 77.9 _refine.ls_R_factor_obs 0.229 _refine.ls_R_factor_all 0.23 _refine.ls_R_factor_R_work 0.229 _refine.ls_R_factor_R_free 0.264 _refine.ls_R_factor_R_free_error 0.006 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.4 _refine.ls_number_reflns_R_free 1931 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 36.0 _refine.aniso_B[1][1] -0.24 _refine.aniso_B[2][2] -15.85 _refine.aniso_B[3][3] 16.09 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -21.96 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.349329 _refine.solvent_model_param_bsol 39.5435 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model 'OVERALL NCS RESTRAINTS. RMS SIGMA/WEIGHT' _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2GSV _refine_analyze.Luzzati_coordinate_error_obs 0.26 _refine_analyze.Luzzati_sigma_a_obs 0.49 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.32 _refine_analyze.Luzzati_sigma_a_free 0.43 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1118 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 75 _refine_hist.number_atoms_total 1203 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 26.87 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 0.9 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 17.8 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.71 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.90 _refine_ls_shell.d_res_low 2.02 _refine_ls_shell.number_reflns_R_work 2138 _refine_ls_shell.R_factor_R_work 0.414 _refine_ls_shell.percent_reflns_obs 53.4 _refine_ls_shell.R_factor_R_free 0.404 _refine_ls_shell.R_factor_R_free_error 0.028 _refine_ls_shell.percent_reflns_R_free 8.9 _refine_ls_shell.number_reflns_R_free 209 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 1931 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2GSV _struct.title 'X-Ray Crystal Structure of Protein YvfG from Bacillus subtilis. Northeast Structural Genomics Consortium Target SR478.' _struct.pdbx_descriptor 'Hypothetical protein yvfG' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2GSV _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;alpha-helical protein, Structural Genomics, PSI, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, UNKNOWN FUNCTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 6 ? ASN A 21 ? SER A 6 ASN A 21 1 ? 16 HELX_P HELX_P2 2 ASP A 25 ? ASP A 44 ? ASP A 25 ASP A 44 1 ? 20 HELX_P HELX_P3 3 LYS A 48 ? GLY A 69 ? LYS A 48 GLY A 69 1 ? 22 HELX_P HELX_P4 4 SER B 6 ? ASN B 21 ? SER B 6 ASN B 21 1 ? 16 HELX_P HELX_P5 5 ASP B 25 ? GLN B 43 ? ASP B 25 GLN B 43 1 ? 19 HELX_P HELX_P6 6 LYS B 48 ? GLY B 69 ? LYS B 48 GLY B 69 1 ? 22 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A GLU 19 C ? ? ? 1_555 A MSE 20 N ? ? A GLU 19 A MSE 20 1_555 ? ? ? ? ? ? ? 1.330 ? covale2 covale ? ? A MSE 20 C ? ? ? 1_555 A ASN 21 N ? ? A MSE 20 A ASN 21 1_555 ? ? ? ? ? ? ? 1.326 ? covale3 covale ? ? A ALA 29 C ? ? ? 1_555 A MSE 30 N ? ? A ALA 29 A MSE 30 1_555 ? ? ? ? ? ? ? 1.327 ? covale4 covale ? ? A MSE 30 C ? ? ? 1_555 A ASN 31 N ? ? A MSE 30 A ASN 31 1_555 ? ? ? ? ? ? ? 1.335 ? covale5 covale ? ? B GLU 19 C ? ? ? 1_555 B MSE 20 N ? ? B GLU 19 B MSE 20 1_555 ? ? ? ? ? ? ? 1.326 ? covale6 covale ? ? B MSE 20 C ? ? ? 1_555 B ASN 21 N ? ? B MSE 20 B ASN 21 1_555 ? ? ? ? ? ? ? 1.329 ? covale7 covale ? ? B ALA 29 C ? ? ? 1_555 B MSE 30 N ? ? B ALA 29 B MSE 30 1_555 ? ? ? ? ? ? ? 1.331 ? covale8 covale ? ? B MSE 30 C ? ? ? 1_555 B ASN 31 N ? ? B MSE 30 B ASN 31 1_555 ? ? ? ? ? ? ? 1.330 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE SO4 A 101' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE SO4 B 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 LYS A 48 ? LYS A 48 . ? 1_555 ? 2 AC1 2 ASN A 49 ? ASN A 49 . ? 1_555 ? 3 AC2 3 GLU B 61 ? GLU B 61 . ? 1_555 ? 4 AC2 3 ASN B 64 ? ASN B 64 . ? 1_555 ? 5 AC2 3 ARG B 68 ? ARG B 68 . ? 1_555 ? # _database_PDB_matrix.entry_id 2GSV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2GSV _atom_sites.fract_transf_matrix[1][1] 0.019589 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001586 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.031601 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018803 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 ? ? ? A . n A 1 2 SER 2 2 ? ? ? A . n A 1 3 GLU 3 3 3 GLU GLU A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 PHE 5 5 5 PHE PHE A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 VAL 7 7 7 VAL VAL A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 TYR 9 9 9 TYR TYR A . n A 1 10 PHE 10 10 10 PHE PHE A . n A 1 11 ILE 11 11 11 ILE ILE A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 ASN 13 13 13 ASN ASN A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 GLN 16 16 16 GLN GLN A . n A 1 17 HIS 17 17 17 HIS HIS A . n A 1 18 ILE 18 18 18 ILE ILE A . n A 1 19 GLU 19 19 19 GLU GLU A . n A 1 20 MSE 20 20 20 MSE MSE A . n A 1 21 ASN 21 21 21 ASN ASN A . n A 1 22 GLN 22 22 22 GLN GLN A . n A 1 23 SER 23 23 23 SER SER A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 ASP 25 25 25 ASP ASP A . n A 1 26 LYS 26 26 26 LYS LYS A . n A 1 27 ILE 27 27 27 ILE ILE A . n A 1 28 HIS 28 28 28 HIS HIS A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 MSE 30 30 30 MSE MSE A . n A 1 31 ASN 31 31 31 ASN ASN A . n A 1 32 SER 32 32 32 SER SER A . n A 1 33 TYR 33 33 33 TYR TYR A . n A 1 34 TYR 34 34 34 TYR TYR A . n A 1 35 ARG 35 35 35 ARG ARG A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 SER 39 39 39 SER SER A . n A 1 40 THR 40 40 40 THR THR A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 VAL 42 42 42 VAL VAL A . n A 1 43 GLN 43 43 43 GLN GLN A . n A 1 44 ASP 44 44 44 ASP ASP A . n A 1 45 GLN 45 45 45 GLN GLN A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 THR 47 47 47 THR THR A . n A 1 48 LYS 48 48 48 LYS LYS A . n A 1 49 ASN 49 49 49 ASN ASN A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 VAL 51 51 51 VAL VAL A . n A 1 52 VAL 52 52 52 VAL VAL A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 LYS 54 54 54 LYS LYS A . n A 1 55 ARG 55 55 55 ARG ARG A . n A 1 56 ILE 56 56 56 ILE ILE A . n A 1 57 GLN 57 57 57 GLN GLN A . n A 1 58 HIS 58 58 58 HIS HIS A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 GLU 61 61 61 GLU GLU A . n A 1 62 ALA 62 62 62 ALA ALA A . n A 1 63 TYR 63 63 63 TYR TYR A . n A 1 64 ASN 64 64 64 ASN ASN A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 VAL 66 66 66 VAL VAL A . n A 1 67 LYS 67 67 67 LYS LYS A . n A 1 68 ARG 68 68 68 ARG ARG A . n A 1 69 GLY 69 69 69 GLY GLY A . n A 1 70 GLU 70 70 ? ? ? A . n A 1 71 SER 71 71 ? ? ? A . n A 1 72 LYS 72 72 ? ? ? A . n A 1 73 LEU 73 73 ? ? ? A . n A 1 74 GLU 74 74 ? ? ? A . n A 1 75 HIS 75 75 ? ? ? A . n A 1 76 HIS 76 76 ? ? ? A . n A 1 77 HIS 77 77 ? ? ? A . n A 1 78 HIS 78 78 ? ? ? A . n A 1 79 HIS 79 79 ? ? ? A . n A 1 80 HIS 80 80 ? ? ? A . n B 1 1 MSE 1 1 ? ? ? B . n B 1 2 SER 2 2 2 SER SER B . n B 1 3 GLU 3 3 3 GLU GLU B . n B 1 4 LEU 4 4 4 LEU LEU B . n B 1 5 PHE 5 5 5 PHE PHE B . n B 1 6 SER 6 6 6 SER SER B . n B 1 7 VAL 7 7 7 VAL VAL B . n B 1 8 PRO 8 8 8 PRO PRO B . n B 1 9 TYR 9 9 9 TYR TYR B . n B 1 10 PHE 10 10 10 PHE PHE B . n B 1 11 ILE 11 11 11 ILE ILE B . n B 1 12 GLU 12 12 12 GLU GLU B . n B 1 13 ASN 13 13 13 ASN ASN B . n B 1 14 LEU 14 14 14 LEU LEU B . n B 1 15 LYS 15 15 15 LYS LYS B . n B 1 16 GLN 16 16 16 GLN GLN B . n B 1 17 HIS 17 17 17 HIS HIS B . n B 1 18 ILE 18 18 18 ILE ILE B . n B 1 19 GLU 19 19 19 GLU GLU B . n B 1 20 MSE 20 20 20 MSE MSE B . n B 1 21 ASN 21 21 21 ASN ASN B . n B 1 22 GLN 22 22 22 GLN GLN B . n B 1 23 SER 23 23 23 SER SER B . n B 1 24 GLU 24 24 24 GLU GLU B . n B 1 25 ASP 25 25 25 ASP ASP B . n B 1 26 LYS 26 26 26 LYS LYS B . n B 1 27 ILE 27 27 27 ILE ILE B . n B 1 28 HIS 28 28 28 HIS HIS B . n B 1 29 ALA 29 29 29 ALA ALA B . n B 1 30 MSE 30 30 30 MSE MSE B . n B 1 31 ASN 31 31 31 ASN ASN B . n B 1 32 SER 32 32 32 SER SER B . n B 1 33 TYR 33 33 33 TYR TYR B . n B 1 34 TYR 34 34 34 TYR TYR B . n B 1 35 ARG 35 35 35 ARG ARG B . n B 1 36 SER 36 36 36 SER SER B . n B 1 37 VAL 37 37 37 VAL VAL B . n B 1 38 VAL 38 38 38 VAL VAL B . n B 1 39 SER 39 39 39 SER SER B . n B 1 40 THR 40 40 40 THR THR B . n B 1 41 LEU 41 41 41 LEU LEU B . n B 1 42 VAL 42 42 42 VAL VAL B . n B 1 43 GLN 43 43 43 GLN GLN B . n B 1 44 ASP 44 44 44 ASP ASP B . n B 1 45 GLN 45 45 45 GLN GLN B . n B 1 46 LEU 46 46 46 LEU LEU B . n B 1 47 THR 47 47 47 THR THR B . n B 1 48 LYS 48 48 48 LYS LYS B . n B 1 49 ASN 49 49 49 ASN ASN B . n B 1 50 ALA 50 50 50 ALA ALA B . n B 1 51 VAL 51 51 51 VAL VAL B . n B 1 52 VAL 52 52 52 VAL VAL B . n B 1 53 LEU 53 53 53 LEU LEU B . n B 1 54 LYS 54 54 54 LYS LYS B . n B 1 55 ARG 55 55 55 ARG ARG B . n B 1 56 ILE 56 56 56 ILE ILE B . n B 1 57 GLN 57 57 57 GLN GLN B . n B 1 58 HIS 58 58 58 HIS HIS B . n B 1 59 LEU 59 59 59 LEU LEU B . n B 1 60 ASP 60 60 60 ASP ASP B . n B 1 61 GLU 61 61 61 GLU GLU B . n B 1 62 ALA 62 62 62 ALA ALA B . n B 1 63 TYR 63 63 63 TYR TYR B . n B 1 64 ASN 64 64 64 ASN ASN B . n B 1 65 LYS 65 65 65 LYS LYS B . n B 1 66 VAL 66 66 66 VAL VAL B . n B 1 67 LYS 67 67 67 LYS LYS B . n B 1 68 ARG 68 68 68 ARG ARG B . n B 1 69 GLY 69 69 69 GLY GLY B . n B 1 70 GLU 70 70 ? ? ? B . n B 1 71 SER 71 71 ? ? ? B . n B 1 72 LYS 72 72 ? ? ? B . n B 1 73 LEU 73 73 ? ? ? B . n B 1 74 GLU 74 74 ? ? ? B . n B 1 75 HIS 75 75 ? ? ? B . n B 1 76 HIS 76 76 ? ? ? B . n B 1 77 HIS 77 77 ? ? ? B . n B 1 78 HIS 78 78 ? ? ? B . n B 1 79 HIS 79 79 ? ? ? B . n B 1 80 HIS 80 80 ? ? ? B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Northeast Structural Genomics Consortium' _pdbx_SG_project.initial_of_center NESG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 1 101 101 SO4 SO4 A . D 2 SO4 1 102 102 SO4 SO4 B . E 3 HOH 1 102 1 HOH HOH A . E 3 HOH 2 103 3 HOH HOH A . E 3 HOH 3 104 4 HOH HOH A . E 3 HOH 4 105 5 HOH HOH A . E 3 HOH 5 106 6 HOH HOH A . E 3 HOH 6 107 8 HOH HOH A . E 3 HOH 7 108 9 HOH HOH A . E 3 HOH 8 109 11 HOH HOH A . E 3 HOH 9 110 12 HOH HOH A . E 3 HOH 10 111 13 HOH HOH A . E 3 HOH 11 112 15 HOH HOH A . E 3 HOH 12 113 16 HOH HOH A . E 3 HOH 13 114 21 HOH HOH A . E 3 HOH 14 115 23 HOH HOH A . E 3 HOH 15 116 24 HOH HOH A . E 3 HOH 16 117 25 HOH HOH A . E 3 HOH 17 118 26 HOH HOH A . E 3 HOH 18 119 32 HOH HOH A . E 3 HOH 19 120 33 HOH HOH A . E 3 HOH 20 121 34 HOH HOH A . E 3 HOH 21 122 38 HOH HOH A . E 3 HOH 22 123 39 HOH HOH A . E 3 HOH 23 124 40 HOH HOH A . E 3 HOH 24 125 41 HOH HOH A . E 3 HOH 25 126 42 HOH HOH A . E 3 HOH 26 127 43 HOH HOH A . E 3 HOH 27 128 44 HOH HOH A . E 3 HOH 28 129 46 HOH HOH A . E 3 HOH 29 130 47 HOH HOH A . E 3 HOH 30 131 48 HOH HOH A . E 3 HOH 31 132 49 HOH HOH A . E 3 HOH 32 133 50 HOH HOH A . E 3 HOH 33 134 51 HOH HOH A . E 3 HOH 34 135 52 HOH HOH A . E 3 HOH 35 136 53 HOH HOH A . E 3 HOH 36 137 64 HOH HOH A . E 3 HOH 37 138 65 HOH HOH A . E 3 HOH 38 139 69 HOH HOH A . F 3 HOH 1 103 2 HOH HOH B . F 3 HOH 2 104 7 HOH HOH B . F 3 HOH 3 105 10 HOH HOH B . F 3 HOH 4 106 14 HOH HOH B . F 3 HOH 5 107 18 HOH HOH B . F 3 HOH 6 108 19 HOH HOH B . F 3 HOH 7 109 20 HOH HOH B . F 3 HOH 8 110 22 HOH HOH B . F 3 HOH 9 111 27 HOH HOH B . F 3 HOH 10 112 28 HOH HOH B . F 3 HOH 11 113 29 HOH HOH B . F 3 HOH 12 114 30 HOH HOH B . F 3 HOH 13 115 31 HOH HOH B . F 3 HOH 14 116 35 HOH HOH B . F 3 HOH 15 117 36 HOH HOH B . F 3 HOH 16 118 37 HOH HOH B . F 3 HOH 17 119 45 HOH HOH B . F 3 HOH 18 120 54 HOH HOH B . F 3 HOH 19 121 55 HOH HOH B . F 3 HOH 20 122 56 HOH HOH B . F 3 HOH 21 123 57 HOH HOH B . F 3 HOH 22 124 58 HOH HOH B . F 3 HOH 23 125 59 HOH HOH B . F 3 HOH 24 126 60 HOH HOH B . F 3 HOH 25 127 61 HOH HOH B . F 3 HOH 26 128 62 HOH HOH B . F 3 HOH 27 129 63 HOH HOH B . F 3 HOH 28 130 66 HOH HOH B . F 3 HOH 29 131 67 HOH HOH B . F 3 HOH 30 132 68 HOH HOH B . F 3 HOH 31 133 70 HOH HOH B . F 3 HOH 32 134 71 HOH HOH B . F 3 HOH 33 135 72 HOH HOH B . F 3 HOH 34 136 73 HOH HOH B . F 3 HOH 35 137 74 HOH HOH B . F 3 HOH 36 138 75 HOH HOH B . F 3 HOH 37 139 76 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 20 A MSE 20 ? MET SELENOMETHIONINE 2 A MSE 30 A MSE 30 ? MET SELENOMETHIONINE 3 B MSE 20 B MSE 20 ? MET SELENOMETHIONINE 4 B MSE 30 B MSE 30 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 software_defined_assembly PISA tetrameric 4 3 software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F 2 1,2 A,B,C,D,E,F 3 1,2 A,C,E 3 3,4 B,D,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1850 ? 1 MORE -20 ? 1 'SSA (A^2)' 7980 ? 2 'ABSA (A^2)' 4820 ? 2 MORE -81 ? 2 'SSA (A^2)' 15210 ? 3 'ABSA (A^2)' 4520 ? 3 MORE -81 ? 3 'SSA (A^2)' 15510 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_657 -x+1,y,-z+2 -1.0000000000 0.0000000000 0.0000000000 42.4339578263 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 106.3657655142 3 'crystal symmetry operation' 1_565 x,y+1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 31.6450000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 2_667 -x+1,y+1,-z+2 -1.0000000000 0.0000000000 0.0000000000 42.4339578263 0.0000000000 1.0000000000 0.0000000000 31.6450000000 0.0000000000 0.0000000000 -1.0000000000 106.3657655142 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A SO4 101 ? C SO4 . 2 1 A SO4 101 ? C SO4 . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-05-09 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 4 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 4 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_software.name' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 ADSC 'data collection' . ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 SnB phasing . ? 5 SOLVE phasing . ? 6 RESOLVE phasing . ? 7 XTALVIEW refinement . ? 8 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LEU _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 46 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -142.23 _pdbx_validate_torsion.psi -0.51 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 1 ? A MSE 1 2 1 Y 1 A SER 2 ? A SER 2 3 1 Y 1 A GLU 70 ? A GLU 70 4 1 Y 1 A SER 71 ? A SER 71 5 1 Y 1 A LYS 72 ? A LYS 72 6 1 Y 1 A LEU 73 ? A LEU 73 7 1 Y 1 A GLU 74 ? A GLU 74 8 1 Y 1 A HIS 75 ? A HIS 75 9 1 Y 1 A HIS 76 ? A HIS 76 10 1 Y 1 A HIS 77 ? A HIS 77 11 1 Y 1 A HIS 78 ? A HIS 78 12 1 Y 1 A HIS 79 ? A HIS 79 13 1 Y 1 A HIS 80 ? A HIS 80 14 1 Y 1 B MSE 1 ? B MSE 1 15 1 Y 1 B GLU 70 ? B GLU 70 16 1 Y 1 B SER 71 ? B SER 71 17 1 Y 1 B LYS 72 ? B LYS 72 18 1 Y 1 B LEU 73 ? B LEU 73 19 1 Y 1 B GLU 74 ? B GLU 74 20 1 Y 1 B HIS 75 ? B HIS 75 21 1 Y 1 B HIS 76 ? B HIS 76 22 1 Y 1 B HIS 77 ? B HIS 77 23 1 Y 1 B HIS 78 ? B HIS 78 24 1 Y 1 B HIS 79 ? B HIS 79 25 1 Y 1 B HIS 80 ? B HIS 80 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH #