HEADER HYDROLASE 09-MAY-06 2GXS TITLE HERA N-TERMINAL DOMAIN IN COMPLEX WITH AMP, CRYSTAL FORM 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEAT RESISTANT RNA DEPENDENT ATPASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS HB27; SOURCE 3 ORGANISM_TAXID: 262724; SOURCE 4 STRAIN: HB-27; SOURCE 5 GENE: HERA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET27B KEYWDS RNA HELICASE, ATOMIC RESOLUTION, AMP COMPLEX, RIBOSOME BIOGENESIS, KEYWDS 2 THERMOPHILIC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.G.RUDOLPH,D.KLOSTERMEIER REVDAT 5 14-FEB-24 2GXS 1 REMARK LINK REVDAT 4 18-OCT-17 2GXS 1 REMARK REVDAT 3 13-JUL-11 2GXS 1 VERSN REVDAT 2 24-FEB-09 2GXS 1 VERSN REVDAT 1 22-AUG-06 2GXS 0 JRNL AUTH M.G.RUDOLPH,R.HEISSMANN,J.G.WITTMANN,D.KLOSTERMEIER JRNL TITL CRYSTAL STRUCTURE AND NUCLEOTIDE BINDING OF THE THERMUS JRNL TITL 2 THERMOPHILUS RNA HELICASE HERA N-TERMINAL DOMAIN. JRNL REF J.MOL.BIOL. V. 351 731 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16890241 JRNL DOI 10.1016/J.JMB.2006.06.065 REMARK 2 REMARK 2 RESOLUTION. 1.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 43198 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2302 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.66 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.70 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2736 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.4070 REMARK 3 BIN FREE R VALUE SET COUNT : 137 REMARK 3 BIN FREE R VALUE : 0.5220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3132 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 57 REMARK 3 SOLVENT ATOMS : 406 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.21000 REMARK 3 B22 (A**2) : -0.16000 REMARK 3 B33 (A**2) : -1.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.39000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.117 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.120 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.560 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3419 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2389 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4691 ; 1.710 ; 2.032 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5881 ; 1.058 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 463 ; 5.269 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 132 ;33.433 ;23.182 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 612 ;13.657 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;18.286 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 560 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3769 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 652 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 752 ; 0.232 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2668 ; 0.216 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1661 ; 0.174 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1872 ; 0.082 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 285 ; 0.180 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.195 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 31 ; 0.292 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 46 ; 0.262 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 33 ; 0.157 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2213 ; 1.119 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 852 ; 0.252 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3481 ; 1.632 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1348 ; 2.511 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1183 ; 3.865 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2GXS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000037679. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 140 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5419 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45511 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.660 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04800 REMARK 200 FOR THE DATA SET : 27.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.50000 REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: COMO REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% PEG6000, 0.3M CACL2, 0.1M TRIS/HCL REMARK 280 PH9.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 68.28200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.41900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 68.28200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.41900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 THE AUTHORS STATE THE BIOLOGICAL UNIT IS EITHER A MONOMER REMARK 300 OR A DIMER AS SHOWN IN REMARK 350. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 207 CA C O CB CG CD CE REMARK 470 LYS A 207 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 110 OD2 ASP A 133 1.85 REMARK 500 O GLY A 109 O HOH A 642 2.09 REMARK 500 OE2 GLU A 152 O HOH A 764 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 96 62.91 -117.83 REMARK 500 SER B 182 118.56 -162.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 603 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 127 OG1 REMARK 620 2 GLY A 129 N 102.6 REMARK 620 3 ARG A 130 N 90.6 52.8 REMARK 620 4 HOH A 616 O 73.1 124.6 162.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 160 O REMARK 620 2 GLU A 163 OE1 80.4 REMARK 620 3 GLU A 164 OE1 84.0 87.7 REMARK 620 4 GLU A 164 OE2 126.7 116.6 49.8 REMARK 620 5 HOH A 716 O 81.1 161.3 93.0 77.2 REMARK 620 6 HOH A 754 O 77.2 95.9 160.0 140.9 77.3 REMARK 620 7 HOH A 765 O 141.2 110.4 131.9 82.9 82.8 64.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 602 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 675 O REMARK 620 2 HOH A 752 O 70.6 REMARK 620 3 HOH B 719 O 82.2 77.2 REMARK 620 4 HOH B 829 O 156.4 131.7 94.6 REMARK 620 5 HOH B 850 O 99.9 146.5 69.6 57.4 REMARK 620 6 HOH B 899 O 105.4 149.7 132.8 60.2 63.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 605 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 127 OG1 REMARK 620 2 GLY B 129 N 99.0 REMARK 620 3 ARG B 130 N 83.9 52.6 REMARK 620 4 HOH B 754 O 101.3 143.2 99.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 604 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 160 O REMARK 620 2 GLU B 164 OE1 89.1 REMARK 620 3 GLU B 164 OE2 113.4 46.3 REMARK 620 4 HOH B 706 O 69.0 157.1 136.2 REMARK 620 5 HOH B 882 O 83.5 95.8 61.7 75.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 701 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GXQ RELATED DB: PDB REMARK 900 HERA N-TERMINAL DOMAIN IN COMPLEX WITH AMP, CRYSTAL FORM 1 REMARK 900 RELATED ID: 2GXU RELATED DB: PDB REMARK 900 HERA N-TERMINAL DOMAIN IN COMPLEX WITH ORTHOPHOSPHATE, CRYSTAL FORM REMARK 900 1 DBREF 2GXS A 1 207 UNP O07897 O07897_THETH 1 207 DBREF 2GXS B 1 207 UNP O07897 O07897_THETH 1 207 SEQRES 1 A 207 MET GLU PHE LYS ASP PHE PRO LEU LYS PRO GLU ILE LEU SEQRES 2 A 207 GLU ALA LEU HIS GLY ARG GLY LEU THR THR PRO THR PRO SEQRES 3 A 207 ILE GLN ALA ALA ALA LEU PRO LEU ALA LEU GLU GLY LYS SEQRES 4 A 207 ASP LEU ILE GLY GLN ALA ARG THR GLY THR GLY LYS THR SEQRES 5 A 207 LEU ALA PHE ALA LEU PRO ILE ALA GLU ARG LEU ALA PRO SEQRES 6 A 207 SER GLN GLU ARG GLY ARG LYS PRO ARG ALA LEU VAL LEU SEQRES 7 A 207 THR PRO THR ARG GLU LEU ALA LEU GLN VAL ALA SER GLU SEQRES 8 A 207 LEU THR ALA VAL ALA PRO HIS LEU LYS VAL VAL ALA VAL SEQRES 9 A 207 TYR GLY GLY THR GLY TYR GLY LYS GLN LYS GLU ALA LEU SEQRES 10 A 207 LEU ARG GLY ALA ASP ALA VAL VAL ALA THR PRO GLY ARG SEQRES 11 A 207 ALA LEU ASP TYR LEU ARG GLN GLY VAL LEU ASP LEU SER SEQRES 12 A 207 ARG VAL GLU VAL ALA VAL LEU ASP GLU ALA ASP GLU MET SEQRES 13 A 207 LEU SER MET GLY PHE GLU GLU GLU VAL GLU ALA LEU LEU SEQRES 14 A 207 SER ALA THR PRO PRO SER ARG GLN THR LEU LEU PHE SER SEQRES 15 A 207 ALA THR LEU PRO SER TRP ALA LYS ARG LEU ALA GLU ARG SEQRES 16 A 207 TYR MET LYS ASN PRO VAL LEU ILE ASN VAL ILE LYS SEQRES 1 B 207 MET GLU PHE LYS ASP PHE PRO LEU LYS PRO GLU ILE LEU SEQRES 2 B 207 GLU ALA LEU HIS GLY ARG GLY LEU THR THR PRO THR PRO SEQRES 3 B 207 ILE GLN ALA ALA ALA LEU PRO LEU ALA LEU GLU GLY LYS SEQRES 4 B 207 ASP LEU ILE GLY GLN ALA ARG THR GLY THR GLY LYS THR SEQRES 5 B 207 LEU ALA PHE ALA LEU PRO ILE ALA GLU ARG LEU ALA PRO SEQRES 6 B 207 SER GLN GLU ARG GLY ARG LYS PRO ARG ALA LEU VAL LEU SEQRES 7 B 207 THR PRO THR ARG GLU LEU ALA LEU GLN VAL ALA SER GLU SEQRES 8 B 207 LEU THR ALA VAL ALA PRO HIS LEU LYS VAL VAL ALA VAL SEQRES 9 B 207 TYR GLY GLY THR GLY TYR GLY LYS GLN LYS GLU ALA LEU SEQRES 10 B 207 LEU ARG GLY ALA ASP ALA VAL VAL ALA THR PRO GLY ARG SEQRES 11 B 207 ALA LEU ASP TYR LEU ARG GLN GLY VAL LEU ASP LEU SER SEQRES 12 B 207 ARG VAL GLU VAL ALA VAL LEU ASP GLU ALA ASP GLU MET SEQRES 13 B 207 LEU SER MET GLY PHE GLU GLU GLU VAL GLU ALA LEU LEU SEQRES 14 B 207 SER ALA THR PRO PRO SER ARG GLN THR LEU LEU PHE SER SEQRES 15 B 207 ALA THR LEU PRO SER TRP ALA LYS ARG LEU ALA GLU ARG SEQRES 16 B 207 TYR MET LYS ASN PRO VAL LEU ILE ASN VAL ILE LYS HET CA A 601 1 HET CA A 602 1 HET CA A 603 1 HET AMP A 501 23 HET CA B 604 1 HET CA B 605 1 HET AMP B 502 23 HET GOL B 701 6 HETNAM CA CALCIUM ION HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CA 5(CA 2+) FORMUL 6 AMP 2(C10 H14 N5 O7 P) FORMUL 10 GOL C3 H8 O3 FORMUL 11 HOH *406(H2 O) HELIX 1 1 GLU A 2 PHE A 6 5 5 HELIX 2 2 LYS A 9 ARG A 19 1 11 HELIX 3 3 THR A 25 LEU A 36 1 12 HELIX 4 4 GLY A 50 LEU A 63 1 14 HELIX 5 5 THR A 81 ALA A 96 1 16 HELIX 6 6 TYR A 110 GLY A 120 1 11 HELIX 7 7 THR A 127 GLN A 137 1 11 HELIX 8 8 GLU A 152 MET A 159 1 8 HELIX 9 9 PHE A 161 ALA A 171 1 11 HELIX 10 10 PRO A 186 MET A 197 1 12 HELIX 11 11 GLU B 2 PHE B 6 5 5 HELIX 12 12 LYS B 9 ARG B 19 1 11 HELIX 13 13 THR B 25 LEU B 36 1 12 HELIX 14 14 GLY B 50 LEU B 63 1 14 HELIX 15 15 THR B 81 ALA B 96 1 16 HELIX 16 16 TYR B 110 GLY B 120 1 11 HELIX 17 17 THR B 127 GLN B 137 1 11 HELIX 18 18 GLU B 152 MET B 159 1 8 HELIX 19 19 PHE B 161 ALA B 171 1 11 HELIX 20 20 PRO B 186 MET B 197 1 12 SHEET 1 A14 VAL A 101 VAL A 104 0 SHEET 2 A14 ALA A 123 ALA A 126 1 O ALA A 123 N VAL A 102 SHEET 3 A14 ALA A 75 LEU A 78 1 N VAL A 77 O ALA A 126 SHEET 4 A14 VAL A 147 LEU A 150 1 O VAL A 149 N LEU A 78 SHEET 5 A14 GLN A 177 PHE A 181 1 O PHE A 181 N LEU A 150 SHEET 6 A14 LEU A 41 GLN A 44 1 N GLY A 43 O LEU A 180 SHEET 7 A14 VAL A 201 ASN A 204 1 O ILE A 203 N GLN A 44 SHEET 8 A14 VAL B 201 VAL B 205 -1 O ASN B 204 N LEU A 202 SHEET 9 A14 LEU B 41 GLN B 44 1 N GLN B 44 O ILE B 203 SHEET 10 A14 GLN B 177 PHE B 181 1 O LEU B 180 N GLY B 43 SHEET 11 A14 VAL B 147 LEU B 150 1 N LEU B 150 O PHE B 181 SHEET 12 A14 ALA B 75 LEU B 78 1 N LEU B 78 O VAL B 149 SHEET 13 A14 ALA B 123 ALA B 126 1 O ALA B 126 N VAL B 77 SHEET 14 A14 VAL B 101 VAL B 104 1 N VAL B 104 O VAL B 125 LINK OG1 THR A 127 CA CA A 603 1555 1555 3.00 LINK N GLY A 129 CA CA A 603 1555 1555 3.15 LINK N ARG A 130 CA CA A 603 1555 1555 3.26 LINK O GLY A 160 CA CA A 601 1555 1555 2.31 LINK OE1 GLU A 163 CA CA A 601 1555 1555 2.45 LINK OE1 GLU A 164 CA CA A 601 1555 1555 2.50 LINK OE2 GLU A 164 CA CA A 601 1555 1555 2.64 LINK CA CA A 601 O HOH A 716 1555 1555 2.42 LINK CA CA A 601 O HOH A 754 1555 1555 2.50 LINK CA CA A 601 O HOH A 765 1555 1555 2.55 LINK CA CA A 602 O HOH A 675 1555 1555 2.47 LINK CA CA A 602 O HOH A 752 1555 1555 2.60 LINK CA CA A 602 O HOH B 719 1555 1555 2.34 LINK CA CA A 602 O HOH B 829 1555 1555 2.45 LINK CA CA A 602 O HOH B 850 1555 1555 3.03 LINK CA CA A 602 O HOH B 899 1555 1555 2.80 LINK CA CA A 603 O HOH A 616 1555 1555 3.30 LINK OG1 THR B 127 CA CA B 605 1555 1555 2.98 LINK N GLY B 129 CA CA B 605 1555 1555 3.27 LINK N ARG B 130 CA CA B 605 1555 1555 3.28 LINK O GLY B 160 CA CA B 604 1555 1555 2.49 LINK OE1 GLU B 164 CA CA B 604 1555 1555 2.68 LINK OE2 GLU B 164 CA CA B 604 1555 1555 2.95 LINK CA CA B 604 O HOH B 706 1555 1555 2.05 LINK CA CA B 604 O HOH B 882 1555 1555 2.51 LINK CA CA B 605 O HOH B 754 1555 1555 3.05 SITE 1 AC1 6 GLY A 160 GLU A 163 GLU A 164 HOH A 716 SITE 2 AC1 6 HOH A 754 HOH A 765 SITE 1 AC2 6 HOH A 675 HOH A 752 HOH B 719 HOH B 829 SITE 2 AC2 6 HOH B 850 HOH B 899 SITE 1 AC3 3 THR A 127 GLY A 129 ARG A 130 SITE 1 AC4 4 GLY B 160 GLU B 164 HOH B 706 HOH B 882 SITE 1 AC5 4 THR B 127 GLY B 129 ARG B 130 HOH B 754 SITE 1 AC6 17 PHE A 3 LEU A 21 THR A 23 GLN A 28 SITE 2 AC6 17 THR A 47 GLY A 48 THR A 49 GLY A 50 SITE 3 AC6 17 LYS A 51 THR A 52 HOH A 609 HOH A 638 SITE 4 AC6 17 HOH A 641 HOH A 656 HOH A 709 HOH A 744 SITE 5 AC6 17 HOH A 796 SITE 1 AC7 12 PHE B 3 LEU B 21 THR B 23 GLN B 28 SITE 2 AC7 12 GLY B 48 THR B 49 GLY B 50 LYS B 51 SITE 3 AC7 12 THR B 52 HOH B 721 HOH B 736 HOH B 823 SITE 1 AC8 7 THR A 93 PRO A 97 HOH A 688 GLY B 129 SITE 2 AC8 7 ARG B 130 ASP B 133 HOH B 754 CRYST1 136.564 42.838 68.645 90.00 100.06 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007323 0.000000 0.001299 0.00000 SCALE2 0.000000 0.023344 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014795 0.00000