HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 12-MAY-06 2GZX TITLE CRYSTAL STRUCTURE OF THE TATD DEOXYRIBONUCLEASE MW0446 FROM TITLE 2 STAPHYLOCOCCUS AUREUS. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TITLE 3 TARGET ZR237. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE TATD RELATED DNASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS; SOURCE 3 ORGANISM_TAXID: 196620; SOURCE 4 STRAIN: MW2; SOURCE 5 GENE: MW0446; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET21 KEYWDS TATD, DNASE, DEOXYRIBONUCLEASE, NESG, ZR237, STRUCTURAL GENOMICS, KEYWDS 2 PSI, PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR S.M.VOROBIEV,H.NEELY,J.SEETHARAMAN,D.WANG,Y.FANG,R.XIAO,T.ACTON, AUTHOR 2 G.T.MONTELIONE,L.TONG,J.F.HUNT,NORTHEAST STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (NESG) REVDAT 6 30-OCT-24 2GZX 1 REMARK SEQADV LINK REVDAT 5 25-OCT-17 2GZX 1 REMARK REVDAT 4 11-OCT-17 2GZX 1 REMARK REVDAT 3 13-JUL-11 2GZX 1 VERSN REVDAT 2 24-FEB-09 2GZX 1 VERSN REVDAT 1 11-JUL-06 2GZX 0 JRNL AUTH S.M.VOROBIEV,H.NEELY,J.SEETHARAMAN,D.WANG,Y.FANG,R.XIAO, JRNL AUTH 2 T.ACTON,G.T.MONTELIONE,L.TONG,J.F.HUNT JRNL TITL CRYSTAL STRUCTURE OF THE TATD DEOXYRIBONUCLEASE MW0446 FROM JRNL TITL 2 STAPHYLOCOCCUS AUREUS. NORTHEAST STRUCTURAL GENOMICS JRNL TITL 3 CONSORTIUM TARGET ZR237. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 307133.380 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 51275 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.258 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2042 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7671 REMARK 3 BIN R VALUE (WORKING SET) : 0.3320 REMARK 3 BIN FREE R VALUE : 0.3770 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 326 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.021 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4019 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 81 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.23000 REMARK 3 B22 (A**2) : -5.13000 REMARK 3 B33 (A**2) : 0.90000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.10000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.34 REMARK 3 ESD FROM SIGMAA (A) : 0.35 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.42 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.990 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 26.44 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2GZX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000037755. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97913 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : ADSC REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53477 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 26.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.54800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.2 AMMONIUM ACETATE, 5 REMARK 280 MM MAGNESIUM CHLORIDE, 0.1 M TRISHCL, PH 8.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.66200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER ACCORDING TO AGGREGATION SCREENING REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 LEU A 255 REMARK 465 ASN A 256 REMARK 465 SER A 257 REMARK 465 LEU A 258 REMARK 465 GLU A 259 REMARK 465 HIS A 260 REMARK 465 HIS A 261 REMARK 465 HIS A 262 REMARK 465 HIS A 263 REMARK 465 HIS A 264 REMARK 465 HIS A 265 REMARK 465 MSE B 1 REMARK 465 LEU B 255 REMARK 465 ASN B 256 REMARK 465 SER B 257 REMARK 465 LEU B 258 REMARK 465 GLU B 259 REMARK 465 HIS B 260 REMARK 465 HIS B 261 REMARK 465 HIS B 262 REMARK 465 HIS B 263 REMARK 465 HIS B 264 REMARK 465 HIS B 265 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 12 CG CD OE1 OE2 REMARK 470 GLU A 160 CG CD OE1 OE2 REMARK 470 ILE A 161 CG1 CG2 CD1 REMARK 470 ASN A 170 CG OD1 ND2 REMARK 470 ASN A 254 CG OD1 ND2 REMARK 470 GLU B 12 CG CD OE1 OE2 REMARK 470 ASP B 15 CG OD1 OD2 REMARK 470 GLU B 20 CG CD OE1 OE2 REMARK 470 LYS B 168 CG CD CE NZ REMARK 470 ASN B 170 CG OD1 ND2 REMARK 470 LEU B 208 CG CD1 CD2 REMARK 470 LYS B 216 CG CD CE NZ REMARK 470 ASN B 254 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 92 CB GLU A 92 CG -0.291 REMARK 500 GLU B 92 CB GLU B 92 CG -0.177 REMARK 500 MSE B 93 SE MSE B 93 CE -0.369 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 91 CA - C - N ANGL. DEV. = -22.8 DEGREES REMARK 500 GLY A 91 O - C - N ANGL. DEV. = 11.6 DEGREES REMARK 500 GLU A 92 C - N - CA ANGL. DEV. = 21.8 DEGREES REMARK 500 GLU A 92 N - CA - CB ANGL. DEV. = 17.3 DEGREES REMARK 500 GLU A 92 CA - CB - CG ANGL. DEV. = -26.0 DEGREES REMARK 500 GLU A 92 CB - CG - CD ANGL. DEV. = -16.5 DEGREES REMARK 500 GLU A 92 N - CA - C ANGL. DEV. = -16.4 DEGREES REMARK 500 GLY B 91 CA - C - N ANGL. DEV. = -22.4 DEGREES REMARK 500 GLU B 92 C - N - CA ANGL. DEV. = 18.2 DEGREES REMARK 500 GLU B 92 N - CA - CB ANGL. DEV. = 14.9 DEGREES REMARK 500 GLU B 92 CA - CB - CG ANGL. DEV. = -19.6 DEGREES REMARK 500 THR B 203 N - CA - C ANGL. DEV. = -16.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 6 98.00 -162.81 REMARK 500 GLU A 92 84.05 61.81 REMARK 500 ALA A 132 31.30 -141.82 REMARK 500 ASN A 170 54.17 -97.27 REMARK 500 PRO A 212 33.50 -94.32 REMARK 500 HIS B 8 68.37 -104.73 REMARK 500 LEU B 18 -68.73 -27.24 REMARK 500 GLU B 92 80.91 58.17 REMARK 500 PHE B 155 118.60 -37.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 91 -13.99 REMARK 500 GLY B 91 -15.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 300 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 6 NE2 REMARK 620 2 HIS A 8 NE2 106.5 REMARK 620 3 ASP A 204 OD1 82.9 82.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 299 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 92 OE2 REMARK 620 2 HIS A 128 ND1 56.7 REMARK 620 3 HIS A 153 NE2 73.5 93.4 REMARK 620 4 HOH A 374 O 138.5 85.2 95.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 297 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 6 NE2 REMARK 620 2 HIS B 8 NE2 103.5 REMARK 620 3 GLU B 92 OE1 93.1 95.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 298 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 92 OE2 REMARK 620 2 HIS B 128 ND1 63.2 REMARK 620 3 HIS B 153 NE2 61.3 91.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 297 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 298 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 299 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: ZR237 RELATED DB: TARGETDB DBREF 2GZX A 1 257 UNP Q1Y6Z0 Q1Y6Z0_STAAU 1 257 DBREF 2GZX B 1 257 UNP Q1Y6Z0 Q1Y6Z0_STAAU 1 257 SEQADV 2GZX MSE A 1 UNP Q1Y6Z0 MET 1 MODIFIED RESIDUE SEQADV 2GZX MSE A 33 UNP Q1Y6Z0 MET 33 MODIFIED RESIDUE SEQADV 2GZX MSE A 47 UNP Q1Y6Z0 MET 47 MODIFIED RESIDUE SEQADV 2GZX MSE A 93 UNP Q1Y6Z0 MET 93 MODIFIED RESIDUE SEQADV 2GZX MSE A 152 UNP Q1Y6Z0 MET 152 MODIFIED RESIDUE SEQADV 2GZX MSE A 196 UNP Q1Y6Z0 MET 196 MODIFIED RESIDUE SEQADV 2GZX LEU A 258 UNP Q1Y6Z0 EXPRESSION TAG SEQADV 2GZX GLU A 259 UNP Q1Y6Z0 EXPRESSION TAG SEQADV 2GZX HIS A 260 UNP Q1Y6Z0 EXPRESSION TAG SEQADV 2GZX HIS A 261 UNP Q1Y6Z0 EXPRESSION TAG SEQADV 2GZX HIS A 262 UNP Q1Y6Z0 EXPRESSION TAG SEQADV 2GZX HIS A 263 UNP Q1Y6Z0 EXPRESSION TAG SEQADV 2GZX HIS A 264 UNP Q1Y6Z0 EXPRESSION TAG SEQADV 2GZX HIS A 265 UNP Q1Y6Z0 EXPRESSION TAG SEQADV 2GZX MSE B 1 UNP Q1Y6Z0 MET 1 MODIFIED RESIDUE SEQADV 2GZX MSE B 33 UNP Q1Y6Z0 MET 33 MODIFIED RESIDUE SEQADV 2GZX MSE B 47 UNP Q1Y6Z0 MET 47 MODIFIED RESIDUE SEQADV 2GZX MSE B 93 UNP Q1Y6Z0 MET 93 MODIFIED RESIDUE SEQADV 2GZX MSE B 152 UNP Q1Y6Z0 MET 152 MODIFIED RESIDUE SEQADV 2GZX MSE B 196 UNP Q1Y6Z0 MET 196 MODIFIED RESIDUE SEQADV 2GZX LEU B 258 UNP Q1Y6Z0 EXPRESSION TAG SEQADV 2GZX GLU B 259 UNP Q1Y6Z0 EXPRESSION TAG SEQADV 2GZX HIS B 260 UNP Q1Y6Z0 EXPRESSION TAG SEQADV 2GZX HIS B 261 UNP Q1Y6Z0 EXPRESSION TAG SEQADV 2GZX HIS B 262 UNP Q1Y6Z0 EXPRESSION TAG SEQADV 2GZX HIS B 263 UNP Q1Y6Z0 EXPRESSION TAG SEQADV 2GZX HIS B 264 UNP Q1Y6Z0 EXPRESSION TAG SEQADV 2GZX HIS B 265 UNP Q1Y6Z0 EXPRESSION TAG SEQRES 1 A 265 MSE LEU ILE ASP THR HIS VAL HIS LEU ASN ASP GLU GLN SEQRES 2 A 265 TYR ASP ASP ASP LEU SER GLU VAL ILE THR ARG ALA ARG SEQRES 3 A 265 GLU ALA GLY VAL ASP ARG MSE PHE VAL VAL GLY PHE ASN SEQRES 4 A 265 LYS SER THR ILE GLU ARG ALA MSE LYS LEU ILE ASP GLU SEQRES 5 A 265 TYR ASP PHE LEU TYR GLY ILE ILE GLY TRP HIS PRO VAL SEQRES 6 A 265 ASP ALA ILE ASP PHE THR GLU GLU HIS LEU GLU TRP ILE SEQRES 7 A 265 GLU SER LEU ALA GLN HIS PRO LYS VAL ILE GLY ILE GLY SEQRES 8 A 265 GLU MSE GLY LEU ASP TYR HIS TRP ASP LYS SER PRO ALA SEQRES 9 A 265 ASP VAL GLN LYS GLU VAL PHE ARG LYS GLN ILE ALA LEU SEQRES 10 A 265 ALA LYS ARG LEU LYS LEU PRO ILE ILE ILE HIS ASN ARG SEQRES 11 A 265 GLU ALA THR GLN ASP CYS ILE ASP ILE LEU LEU GLU GLU SEQRES 12 A 265 HIS ALA GLU GLU VAL GLY GLY ILE MSE HIS SER PHE SER SEQRES 13 A 265 GLY SER PRO GLU ILE ALA ASP ILE VAL THR ASN LYS LEU SEQRES 14 A 265 ASN PHE TYR ILE SER LEU GLY GLY PRO VAL THR PHE LYS SEQRES 15 A 265 ASN ALA LYS GLN PRO LYS GLU VAL ALA LYS HIS VAL SER SEQRES 16 A 265 MSE GLU ARG LEU LEU VAL GLU THR ASP ALA PRO TYR LEU SEQRES 17 A 265 SER PRO HIS PRO TYR ARG GLY LYS ARG ASN GLU PRO ALA SEQRES 18 A 265 ARG VAL THR LEU VAL ALA GLU GLN ILE ALA GLU LEU LYS SEQRES 19 A 265 GLY LEU SER TYR GLU GLU VAL CYS GLU GLN THR THR LYS SEQRES 20 A 265 ASN ALA GLU LYS LEU PHE ASN LEU ASN SER LEU GLU HIS SEQRES 21 A 265 HIS HIS HIS HIS HIS SEQRES 1 B 265 MSE LEU ILE ASP THR HIS VAL HIS LEU ASN ASP GLU GLN SEQRES 2 B 265 TYR ASP ASP ASP LEU SER GLU VAL ILE THR ARG ALA ARG SEQRES 3 B 265 GLU ALA GLY VAL ASP ARG MSE PHE VAL VAL GLY PHE ASN SEQRES 4 B 265 LYS SER THR ILE GLU ARG ALA MSE LYS LEU ILE ASP GLU SEQRES 5 B 265 TYR ASP PHE LEU TYR GLY ILE ILE GLY TRP HIS PRO VAL SEQRES 6 B 265 ASP ALA ILE ASP PHE THR GLU GLU HIS LEU GLU TRP ILE SEQRES 7 B 265 GLU SER LEU ALA GLN HIS PRO LYS VAL ILE GLY ILE GLY SEQRES 8 B 265 GLU MSE GLY LEU ASP TYR HIS TRP ASP LYS SER PRO ALA SEQRES 9 B 265 ASP VAL GLN LYS GLU VAL PHE ARG LYS GLN ILE ALA LEU SEQRES 10 B 265 ALA LYS ARG LEU LYS LEU PRO ILE ILE ILE HIS ASN ARG SEQRES 11 B 265 GLU ALA THR GLN ASP CYS ILE ASP ILE LEU LEU GLU GLU SEQRES 12 B 265 HIS ALA GLU GLU VAL GLY GLY ILE MSE HIS SER PHE SER SEQRES 13 B 265 GLY SER PRO GLU ILE ALA ASP ILE VAL THR ASN LYS LEU SEQRES 14 B 265 ASN PHE TYR ILE SER LEU GLY GLY PRO VAL THR PHE LYS SEQRES 15 B 265 ASN ALA LYS GLN PRO LYS GLU VAL ALA LYS HIS VAL SER SEQRES 16 B 265 MSE GLU ARG LEU LEU VAL GLU THR ASP ALA PRO TYR LEU SEQRES 17 B 265 SER PRO HIS PRO TYR ARG GLY LYS ARG ASN GLU PRO ALA SEQRES 18 B 265 ARG VAL THR LEU VAL ALA GLU GLN ILE ALA GLU LEU LYS SEQRES 19 B 265 GLY LEU SER TYR GLU GLU VAL CYS GLU GLN THR THR LYS SEQRES 20 B 265 ASN ALA GLU LYS LEU PHE ASN LEU ASN SER LEU GLU HIS SEQRES 21 B 265 HIS HIS HIS HIS HIS MODRES 2GZX MSE A 33 MET SELENOMETHIONINE MODRES 2GZX MSE A 47 MET SELENOMETHIONINE MODRES 2GZX MSE A 93 MET SELENOMETHIONINE MODRES 2GZX MSE A 152 MET SELENOMETHIONINE MODRES 2GZX MSE A 196 MET SELENOMETHIONINE MODRES 2GZX MSE B 33 MET SELENOMETHIONINE MODRES 2GZX MSE B 47 MET SELENOMETHIONINE MODRES 2GZX MSE B 93 MET SELENOMETHIONINE MODRES 2GZX MSE B 152 MET SELENOMETHIONINE MODRES 2GZX MSE B 196 MET SELENOMETHIONINE HET MSE A 33 8 HET MSE A 47 8 HET MSE A 93 8 HET MSE A 152 8 HET MSE A 196 8 HET MSE B 33 8 HET MSE B 47 8 HET MSE B 93 8 HET MSE B 152 8 HET MSE B 196 8 HET NI A 299 1 HET NI A 300 1 HET NI B 297 1 HET NI B 298 1 HETNAM MSE SELENOMETHIONINE HETNAM NI NICKEL (II) ION FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 NI 4(NI 2+) FORMUL 7 HOH *81(H2 O) HELIX 1 1 ASP A 11 ASP A 15 5 5 HELIX 2 2 ASP A 17 ALA A 28 1 12 HELIX 3 3 ASN A 39 TYR A 53 1 15 HELIX 4 4 HIS A 63 PHE A 70 5 8 HELIX 5 5 THR A 71 ALA A 82 1 12 HELIX 6 6 PRO A 103 LYS A 122 1 20 HELIX 7 7 ALA A 132 GLU A 143 1 12 HELIX 8 8 HIS A 144 VAL A 148 5 5 HELIX 9 9 SER A 158 LYS A 168 1 11 HELIX 10 10 GLY A 176 PHE A 181 5 6 HELIX 11 11 LYS A 185 VAL A 194 1 10 HELIX 12 12 GLU A 219 ALA A 221 5 3 HELIX 13 13 ARG A 222 LYS A 234 1 13 HELIX 14 14 SER A 237 ASN A 254 1 18 HELIX 15 15 ASP B 11 ASP B 15 5 5 HELIX 16 16 ASP B 17 ALA B 28 1 12 HELIX 17 17 ASN B 39 TYR B 53 1 15 HELIX 18 18 HIS B 63 PHE B 70 5 8 HELIX 19 19 THR B 71 ALA B 82 1 12 HELIX 20 20 PRO B 103 LYS B 122 1 20 HELIX 21 21 ALA B 132 GLU B 143 1 12 HELIX 22 22 HIS B 144 VAL B 148 5 5 HELIX 23 23 SER B 158 LYS B 168 1 11 HELIX 24 24 GLY B 176 PHE B 181 5 6 HELIX 25 25 LYS B 185 VAL B 194 1 10 HELIX 26 26 SER B 195 GLU B 197 5 3 HELIX 27 27 GLU B 219 ALA B 221 5 3 HELIX 28 28 ARG B 222 GLY B 235 1 14 HELIX 29 29 SER B 237 ASN B 254 1 18 SHEET 1 A 8 ILE A 3 VAL A 7 0 SHEET 2 A 8 ARG A 32 GLY A 37 1 O PHE A 34 N ASP A 4 SHEET 3 A 8 LEU A 56 ILE A 60 1 O TYR A 57 N VAL A 35 SHEET 4 A 8 VAL A 87 ASP A 96 1 O ILE A 88 N GLY A 58 SHEET 5 A 8 ILE A 125 ARG A 130 1 O HIS A 128 N MSE A 93 SHEET 6 A 8 GLY A 150 MSE A 152 1 O ILE A 151 N ILE A 127 SHEET 7 A 8 TYR A 172 LEU A 175 1 O TYR A 172 N GLY A 150 SHEET 8 A 8 LEU A 199 VAL A 201 1 O LEU A 200 N LEU A 175 SHEET 1 B 8 ILE B 3 VAL B 7 0 SHEET 2 B 8 ARG B 32 GLY B 37 1 O PHE B 34 N ASP B 4 SHEET 3 B 8 LEU B 56 ILE B 60 1 O TYR B 57 N VAL B 35 SHEET 4 B 8 VAL B 87 ASP B 96 1 O ILE B 88 N GLY B 58 SHEET 5 B 8 ILE B 125 ARG B 130 1 O HIS B 128 N MSE B 93 SHEET 6 B 8 GLY B 150 MSE B 152 1 O ILE B 151 N ILE B 127 SHEET 7 B 8 TYR B 172 LEU B 175 1 O TYR B 172 N GLY B 150 SHEET 8 B 8 LEU B 199 VAL B 201 1 O LEU B 200 N LEU B 175 LINK C ARG A 32 N MSE A 33 1555 1555 1.33 LINK C MSE A 33 N PHE A 34 1555 1555 1.33 LINK C ALA A 46 N MSE A 47 1555 1555 1.33 LINK C MSE A 47 N LYS A 48 1555 1555 1.33 LINK C GLU A 92 N MSE A 93 1555 1555 1.32 LINK C MSE A 93 N GLY A 94 1555 1555 1.33 LINK C ILE A 151 N MSE A 152 1555 1555 1.34 LINK C MSE A 152 N HIS A 153 1555 1555 1.33 LINK C SER A 195 N MSE A 196 1555 1555 1.33 LINK C MSE A 196 N GLU A 197 1555 1555 1.33 LINK C ARG B 32 N MSE B 33 1555 1555 1.33 LINK C MSE B 33 N PHE B 34 1555 1555 1.33 LINK C ALA B 46 N MSE B 47 1555 1555 1.33 LINK C MSE B 47 N LYS B 48 1555 1555 1.33 LINK C GLU B 92 N MSE B 93 1555 1555 1.33 LINK C MSE B 93 N GLY B 94 1555 1555 1.33 LINK C ILE B 151 N MSE B 152 1555 1555 1.33 LINK C MSE B 152 N HIS B 153 1555 1555 1.33 LINK C SER B 195 N MSE B 196 1555 1555 1.32 LINK C MSE B 196 N GLU B 197 1555 1555 1.33 LINK NE2 HIS A 6 NI NI A 300 1555 1555 2.12 LINK NE2 HIS A 8 NI NI A 300 1555 1555 2.23 LINK OE2 GLU A 92 NI NI A 299 1555 1555 2.41 LINK ND1 HIS A 128 NI NI A 299 1555 1555 2.44 LINK NE2 HIS A 153 NI NI A 299 1555 1555 2.35 LINK OD1 ASP A 204 NI NI A 300 1555 1555 2.39 LINK NI NI A 299 O HOH A 374 1555 1555 2.11 LINK NE2 HIS B 6 NI NI B 297 1555 1555 2.10 LINK NE2 HIS B 8 NI NI B 297 1555 1555 2.29 LINK OE1 GLU B 92 NI NI B 297 1555 1555 2.64 LINK OE2 GLU B 92 NI NI B 298 1555 1555 2.51 LINK ND1 HIS B 128 NI NI B 298 1555 1555 2.53 LINK NE2 HIS B 153 NI NI B 298 1555 1555 2.70 CISPEP 1 ALA A 205 PRO A 206 0 2.55 CISPEP 2 HIS A 211 PRO A 212 0 0.04 CISPEP 3 ALA B 205 PRO B 206 0 0.33 CISPEP 4 HIS B 211 PRO B 212 0 0.49 SITE 1 AC1 5 HIS B 6 HIS B 8 GLU B 92 ASP B 204 SITE 2 AC1 5 NI B 298 SITE 1 AC2 4 GLU B 92 HIS B 128 HIS B 153 NI B 297 SITE 1 AC3 7 GLU A 92 HIS A 128 HIS A 153 ASP A 204 SITE 2 AC3 7 NI A 300 HOH A 314 HOH A 374 SITE 1 AC4 5 HIS A 6 HIS A 8 GLU A 92 ASP A 204 SITE 2 AC4 5 NI A 299 CRYST1 46.678 77.324 76.129 90.00 98.01 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021423 0.000000 0.003015 0.00000 SCALE2 0.000000 0.012933 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013265 0.00000