HEADER METAL BINDING PROTEIN/LIGASE 14-MAY-06 2H0D TITLE STRUCTURE OF A BMI-1-RING1B POLYCOMB GROUP UBIQUITIN LIGASE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: B LYMPHOMA MO-MLV INSERTION REGION; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 5-101; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: UBIQUITIN LIGASE PROTEIN RING2; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: RESIDUES 15-114; COMPND 10 SYNONYM: RING FINGER PROTEIN 2, RING FINGER PROTEIN 1B, RING1B, RING COMPND 11 FINGER PROTEIN BAP-1, DING PROTEIN, HUNTINGTIN-INTERACTING PROTEIN 2- COMPND 12 INTERACTING PROTEIN 3, HIP2-INTERACTING PROTEIN 3; COMPND 13 EC: 6.3.2.-; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-KG-6P; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PCDFDUET-1 KEYWDS POLYCOMB, CHROMATIN, UBIQUITIN LIGASE, HISTONE, TRANSCRIPTION, KEYWDS 2 WPIGENETICS, METAL BINDING PROTEIN-LIGASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.M.XU REVDAT 6 14-FEB-24 2H0D 1 REMARK LINK REVDAT 5 18-OCT-17 2H0D 1 REMARK REVDAT 4 13-JUL-11 2H0D 1 VERSN REVDAT 3 24-FEB-09 2H0D 1 VERSN REVDAT 2 01-AUG-06 2H0D 1 JRNL REVDAT 1 23-MAY-06 2H0D 0 JRNL AUTH Z.LI,R.CAO,M.WANG,M.P.MYERS,Y.ZHANG,R.M.XU JRNL TITL STRUCTURE OF A BMI-1-RING1B POLYCOMB GROUP UBIQUITIN LIGASE JRNL TITL 2 COMPLEX. JRNL REF J.BIOL.CHEM. V. 281 20643 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16714294 JRNL DOI 10.1074/JBC.M602461200 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 104.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 7686 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 373 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 536 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 25 REMARK 3 BIN FREE R VALUE : 0.4210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1589 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 31 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.65000 REMARK 3 B22 (A**2) : 0.65000 REMARK 3 B33 (A**2) : -0.97000 REMARK 3 B12 (A**2) : 0.32000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.625 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.286 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.190 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.127 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1634 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2198 ; 1.319 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 195 ; 5.834 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 65 ;37.215 ;22.615 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 315 ;17.283 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;13.608 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 256 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1166 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 679 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1120 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 49 ; 0.140 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 16 ; 0.255 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1013 ; 0.598 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1623 ; 1.076 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 683 ; 2.251 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 575 ; 2.985 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 82 REMARK 3 ORIGIN FOR THE GROUP (A): 5.9285 48.4700 12.2762 REMARK 3 T TENSOR REMARK 3 T11: 0.0406 T22: 0.0613 REMARK 3 T33: 0.0272 T12: 0.0081 REMARK 3 T13: -0.0056 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 2.2202 L22: 2.4586 REMARK 3 L33: 2.4147 L12: -1.8001 REMARK 3 L13: 0.2441 L23: -0.2933 REMARK 3 S TENSOR REMARK 3 S11: 0.0576 S12: -0.0312 S13: -0.0468 REMARK 3 S21: -0.1241 S22: -0.0012 S23: 0.0240 REMARK 3 S31: 0.0112 S32: -0.1334 S33: -0.0565 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 15 B 39 REMARK 3 ORIGIN FOR THE GROUP (A): 14.3835 48.7730 19.9753 REMARK 3 T TENSOR REMARK 3 T11: 0.0212 T22: 0.0632 REMARK 3 T33: -0.0168 T12: 0.0191 REMARK 3 T13: 0.0207 T23: 0.0482 REMARK 3 L TENSOR REMARK 3 L11: 1.8565 L22: 4.2203 REMARK 3 L33: 2.4205 L12: 0.3660 REMARK 3 L13: 0.4574 L23: 0.4138 REMARK 3 S TENSOR REMARK 3 S11: 0.0282 S12: -0.1500 S13: 0.1263 REMARK 3 S21: 0.1692 S22: -0.0828 S23: -0.4760 REMARK 3 S31: 0.0394 S32: 0.1986 S33: 0.0546 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 40 B 114 REMARK 3 ORIGIN FOR THE GROUP (A): -8.1661 38.0307 15.0633 REMARK 3 T TENSOR REMARK 3 T11: -0.0183 T22: 0.1098 REMARK 3 T33: 0.0773 T12: -0.0924 REMARK 3 T13: -0.0245 T23: 0.0287 REMARK 3 L TENSOR REMARK 3 L11: 9.2469 L22: 1.5089 REMARK 3 L33: 1.2766 L12: -0.4901 REMARK 3 L13: 0.2001 L23: 0.8482 REMARK 3 S TENSOR REMARK 3 S11: 0.3391 S12: -0.2993 S13: -0.3950 REMARK 3 S21: -0.0391 S22: -0.0951 S23: 0.0391 REMARK 3 S31: 0.1695 S32: -0.0032 S33: -0.2440 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 83 A 101 REMARK 3 ORIGIN FOR THE GROUP (A): 17.7516 49.3633 28.5807 REMARK 3 T TENSOR REMARK 3 T11: 0.0374 T22: 0.1472 REMARK 3 T33: 0.0029 T12: 0.0180 REMARK 3 T13: -0.0063 T23: 0.0193 REMARK 3 L TENSOR REMARK 3 L11: 5.4991 L22: 14.3030 REMARK 3 L33: 3.7891 L12: 5.8242 REMARK 3 L13: 3.4199 L23: 5.5317 REMARK 3 S TENSOR REMARK 3 S11: 0.0026 S12: -0.2446 S13: -0.0540 REMARK 3 S21: 0.3445 S22: -0.1767 S23: -0.0496 REMARK 3 S31: -0.1313 S32: 0.3394 S33: 0.1741 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2H0D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000037771. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2821, 1.2826, 1.25 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, MADNESS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8143 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.25800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE 2.08 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MM TRIS, 500 MM NACL, 1 MM EDTA, REMARK 280 1.5 MM DTT, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 13.60450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 13.60450 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 13.60450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 57 -1.85 75.53 REMARK 500 THR A 63 -38.21 -130.66 REMARK 500 ASP A 72 75.10 -102.80 REMARK 500 SER B 96 -159.56 -160.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 18 SG REMARK 620 2 CYS A 21 SG 109.9 REMARK 620 3 CYS A 39 SG 102.5 103.0 REMARK 620 4 CYS A 42 SG 115.9 113.2 111.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 34 SG REMARK 620 2 HIS A 36 ND1 114.4 REMARK 620 3 CYS A 53 SG 109.1 109.5 REMARK 620 4 CYS A 56 SG 106.3 108.1 109.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 51 SG REMARK 620 2 CYS B 54 SG 109.2 REMARK 620 3 CYS B 72 SG 95.1 103.3 REMARK 620 4 CYS B 75 SG 123.4 108.0 115.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 204 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 67 SG REMARK 620 2 HIS B 69 ND1 108.5 REMARK 620 3 CYS B 87 SG 110.1 113.1 REMARK 620 4 CYS B 90 SG 99.0 113.2 111.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 204 DBREF 2H0D A 5 101 UNP Q5T8Z3 Q5T8Z3_HUMAN 5 101 DBREF 2H0D B 15 114 UNP Q99496 RING2_HUMAN 15 114 SEQRES 1 A 97 THR ARG ILE LYS ILE THR GLU LEU ASN PRO HIS LEU MET SEQRES 2 A 97 CYS VAL LEU CYS GLY GLY TYR PHE ILE ASP ALA THR THR SEQRES 3 A 97 ILE ILE GLU CYS LEU HIS SER PHE CYS LYS THR CYS ILE SEQRES 4 A 97 VAL ARG TYR LEU GLU THR SER LYS TYR CYS PRO ILE CYS SEQRES 5 A 97 ASP VAL GLN VAL HIS LYS THR ARG PRO LEU LEU ASN ILE SEQRES 6 A 97 ARG SER ASP LYS THR LEU GLN ASP ILE VAL TYR LYS LEU SEQRES 7 A 97 VAL PRO GLY LEU PHE LYS ASN GLU MET LYS ARG ARG ARG SEQRES 8 A 97 ASP PHE TYR ALA ALA HIS SEQRES 1 B 100 LYS THR TRP GLU LEU SER LEU TYR GLU LEU GLN ARG THR SEQRES 2 B 100 PRO GLN GLU ALA ILE THR ASP GLY LEU GLU ILE VAL VAL SEQRES 3 B 100 SER PRO ARG SER LEU HIS SER GLU LEU MET CYS PRO ILE SEQRES 4 B 100 CYS LEU ASP MET LEU LYS ASN THR MET THR THR LYS GLU SEQRES 5 B 100 CYS LEU HIS ARG PHE CYS ALA ASP CYS ILE ILE THR ALA SEQRES 6 B 100 LEU ARG SER GLY ASN LYS GLU CYS PRO THR CYS ARG LYS SEQRES 7 B 100 LYS LEU VAL SER LYS ARG SER LEU ARG PRO ASP PRO ASN SEQRES 8 B 100 PHE ASP ALA LEU ILE SER LYS ILE TYR HET ZN A 201 1 HET ZN A 202 1 HET ZN B 203 1 HET ZN B 204 1 HETNAM ZN ZINC ION FORMUL 3 ZN 4(ZN 2+) FORMUL 7 HOH *31(H2 O) HELIX 1 1 ILE A 9 ASN A 13 1 5 HELIX 2 2 PRO A 14 LEU A 16 5 3 HELIX 3 3 CYS A 39 LEU A 47 1 9 HELIX 4 4 ARG A 64 LEU A 67 5 4 HELIX 5 5 ASP A 72 VAL A 83 1 12 HELIX 6 6 GLY A 85 HIS A 101 1 17 HELIX 7 7 SER B 20 ARG B 26 1 7 HELIX 8 8 HIS B 46 MET B 50 5 5 HELIX 9 9 ALA B 73 SER B 82 1 10 HELIX 10 10 SER B 96 ARG B 98 5 3 HELIX 11 11 ASP B 103 TYR B 114 1 12 SHEET 1 A 2 ARG A 6 LYS A 8 0 SHEET 2 A 2 GLU B 37 VAL B 39 -1 O ILE B 38 N ILE A 7 SHEET 1 B 3 SER A 37 PHE A 38 0 SHEET 2 B 3 THR A 29 ILE A 31 -1 N THR A 29 O PHE A 38 SHEET 3 B 3 ILE A 69 SER A 71 -1 O ARG A 70 N THR A 30 SHEET 1 C 3 ARG B 70 CYS B 72 0 SHEET 2 C 3 THR B 61 THR B 64 -1 N MET B 62 O PHE B 71 SHEET 3 C 3 LEU B 100 PRO B 102 -1 O ARG B 101 N THR B 63 LINK SG CYS A 18 ZN ZN A 201 1555 1555 2.32 LINK SG CYS A 21 ZN ZN A 201 1555 1555 2.34 LINK SG CYS A 34 ZN ZN A 202 1555 1555 2.32 LINK ND1 HIS A 36 ZN ZN A 202 1555 1555 2.17 LINK SG CYS A 39 ZN ZN A 201 1555 1555 2.36 LINK SG CYS A 42 ZN ZN A 201 1555 1555 2.35 LINK SG CYS A 53 ZN ZN A 202 1555 1555 2.32 LINK SG CYS A 56 ZN ZN A 202 1555 1555 2.35 LINK SG CYS B 51 ZN ZN B 203 1555 1555 2.33 LINK SG CYS B 54 ZN ZN B 203 1555 1555 2.35 LINK SG CYS B 67 ZN ZN B 204 1555 1555 2.34 LINK ND1 HIS B 69 ZN ZN B 204 1555 1555 2.20 LINK SG CYS B 72 ZN ZN B 203 1555 1555 2.36 LINK SG CYS B 75 ZN ZN B 203 1555 1555 2.36 LINK SG CYS B 87 ZN ZN B 204 1555 1555 2.35 LINK SG CYS B 90 ZN ZN B 204 1555 1555 2.35 SITE 1 AC1 4 CYS A 18 CYS A 21 CYS A 39 CYS A 42 SITE 1 AC2 4 CYS A 34 HIS A 36 CYS A 53 CYS A 56 SITE 1 AC3 4 CYS B 51 CYS B 54 CYS B 72 CYS B 75 SITE 1 AC4 4 CYS B 67 HIS B 69 CYS B 87 CYS B 90 CRYST1 120.514 120.514 27.209 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008298 0.004791 0.000000 0.00000 SCALE2 0.000000 0.009581 0.000000 0.00000 SCALE3 0.000000 0.000000 0.036753 0.00000