data_2H0N # _entry.id 2H0N # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2H0N pdb_00002h0n 10.2210/pdb2h0n/pdb NDB UD0068 ? ? RCSB RCSB037781 ? ? WWPDB D_1000037781 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-04-24 2 'Structure model' 1 1 2008-03-17 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-11 5 'Structure model' 1 4 2024-02-14 6 'Structure model' 1 5 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' 8 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' reflns_shell 2 4 'Structure model' software 3 5 'Structure model' chem_comp_atom 4 5 'Structure model' chem_comp_bond 5 5 'Structure model' database_2 6 5 'Structure model' diffrn_source 7 5 'Structure model' struct_conn 8 5 'Structure model' struct_site 9 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_reflns_shell.number_unique_all' 2 4 'Structure model' '_reflns_shell.percent_possible_all' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.name' 5 5 'Structure model' '_database_2.pdbx_DOI' 6 5 'Structure model' '_database_2.pdbx_database_accession' 7 5 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 8 5 'Structure model' '_struct_conn.pdbx_dist_value' 9 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 10 5 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 11 5 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id' 12 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 13 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 14 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 15 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 16 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 17 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 18 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 19 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 20 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 21 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 22 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 23 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 24 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 25 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 26 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2H0N _pdbx_database_status.recvd_initial_deposition_date 2006-05-15 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Robeyns, K.' 1 'Van Meervelt, L.' 2 # _citation.id primary _citation.title 'Structure of the fully modified left-handed cyclohexene nucleic acid sequence GTGTACAC.' _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 130 _citation.page_first 1979 _citation.page_last 1984 _citation.year 2008 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18198873 _citation.pdbx_database_id_DOI 10.1021/ja077313f # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Robeyns, K.' 1 ? primary 'Herdewijn, P.' 2 ? primary 'Van Meervelt, L.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-(*(XGL)P*(XTL)P*(XGL)P*(XTL)P*(XAL)P*(XCL)P*(XAL)P*(XCL)-Phosphate)-3'" 2506.921 2 ? ? ? ? 2 non-polymer syn 'DIHYDROGENPHOSPHATE ION' 96.987 2 ? ? ? ? 3 water nat water 18.015 62 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(XGL)(XTL)(XGL)(XTL)(XAL)(XCL)(XAL)(XCL)' _entity_poly.pdbx_seq_one_letter_code_can GTGTACAC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'DIHYDROGENPHOSPHATE ION' 2HP 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 XGL n 1 2 XTL n 1 3 XGL n 1 4 XTL n 1 5 XAL n 1 6 XCL n 1 7 XAL n 1 8 XCL n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2HP non-polymer . 'DIHYDROGENPHOSPHATE ION' ? 'H2 O4 P -1' 96.987 HOH non-polymer . WATER ? 'H2 O' 18.015 XAL 'DNA linking' n '[(1S,4R,6R)-6-HYDROXY-4-(ADENIN-9-YL)CYCLOHEX-2-EN-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C12 H16 N5 O5 P' 341.260 XCL 'DNA linking' n '[(1S,4R,6R)-6-HYDROXY-4-(CYTOSIN-9-YL)CYCLOHEX-2-EN-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H16 N3 O6 P' 317.235 XGL 'DNA linking' n '[(1S,4R,6R)-6-HYDROXY-4-(GUANIN-9-YL)CYCLOHEX-2-EN-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C12 H16 N5 O6 P' 357.259 XTL 'DNA linking' n '[(1S,4R,6R)-6-HYDROXY-4-(THYMIN-9-YL)CYCLOHEX-2-EN-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C12 H17 N2 O7 P' 332.246 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 XGL 1 1 1 XGL XGL A . n A 1 2 XTL 2 2 2 XTL XTL A . n A 1 3 XGL 3 3 3 XGL XGL A . n A 1 4 XTL 4 4 4 XTL XTL A . n A 1 5 XAL 5 5 5 XAL XAL A . n A 1 6 XCL 6 6 6 XCL XCL A . n A 1 7 XAL 7 7 7 XAL XAL A . n A 1 8 XCL 8 8 8 XCL XCL A . n B 1 1 XGL 1 1 1 XGL XGL B . n B 1 2 XTL 2 2 2 XTL XTL B . n B 1 3 XGL 3 3 3 XGL XGL B . n B 1 4 XTL 4 4 4 XTL XTL B . n B 1 5 XAL 5 5 5 XAL XAL B . n B 1 6 XCL 6 6 6 XCL XCL B . n B 1 7 XAL 7 7 7 XAL XAL B . n B 1 8 XCL 8 8 8 XCL XCL B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 2HP 1 9 9 2HP XGL A . D 2 2HP 1 9 9 2HP XGL B . E 3 HOH 1 10 10 HOH HOH A . E 3 HOH 2 11 11 HOH HOH A . E 3 HOH 3 12 12 HOH HOH A . E 3 HOH 4 13 13 HOH HOH A . E 3 HOH 5 14 14 HOH HOH A . E 3 HOH 6 15 15 HOH HOH A . E 3 HOH 7 16 16 HOH HOH A . E 3 HOH 8 17 17 HOH HOH A . E 3 HOH 9 18 18 HOH HOH A . E 3 HOH 10 19 19 HOH HOH A . E 3 HOH 11 20 20 HOH HOH A . E 3 HOH 12 21 21 HOH HOH A . E 3 HOH 13 22 22 HOH HOH A . E 3 HOH 14 23 23 HOH HOH A . E 3 HOH 15 24 24 HOH HOH A . E 3 HOH 16 25 25 HOH HOH A . E 3 HOH 17 26 26 HOH HOH A . E 3 HOH 18 27 27 HOH HOH A . E 3 HOH 19 28 28 HOH HOH A . E 3 HOH 20 29 29 HOH HOH A . E 3 HOH 21 30 30 HOH HOH A . E 3 HOH 22 31 31 HOH HOH A . E 3 HOH 23 32 32 HOH HOH A . E 3 HOH 24 33 33 HOH HOH A . E 3 HOH 25 34 34 HOH HOH A . E 3 HOH 26 35 35 HOH HOH A . E 3 HOH 27 36 36 HOH HOH A . E 3 HOH 28 37 37 HOH HOH A . E 3 HOH 29 38 38 HOH HOH A . E 3 HOH 30 39 39 HOH HOH A . E 3 HOH 31 40 40 HOH HOH A . F 3 HOH 1 10 10 HOH HOH B . F 3 HOH 2 11 11 HOH HOH B . F 3 HOH 3 12 12 HOH HOH B . F 3 HOH 4 13 13 HOH HOH B . F 3 HOH 5 14 14 HOH HOH B . F 3 HOH 6 15 15 HOH HOH B . F 3 HOH 7 16 16 HOH HOH B . F 3 HOH 8 17 17 HOH HOH B . F 3 HOH 9 18 18 HOH HOH B . F 3 HOH 10 19 19 HOH HOH B . F 3 HOH 11 20 20 HOH HOH B . F 3 HOH 12 21 21 HOH HOH B . F 3 HOH 13 22 22 HOH HOH B . F 3 HOH 14 23 23 HOH HOH B . F 3 HOH 15 24 24 HOH HOH B . F 3 HOH 16 25 25 HOH HOH B . F 3 HOH 17 26 26 HOH HOH B . F 3 HOH 18 27 27 HOH HOH B . F 3 HOH 19 28 28 HOH HOH B . F 3 HOH 20 29 29 HOH HOH B . F 3 HOH 21 30 30 HOH HOH B . F 3 HOH 22 31 31 HOH HOH B . F 3 HOH 23 32 32 HOH HOH B . F 3 HOH 24 33 33 HOH HOH B . F 3 HOH 25 34 34 HOH HOH B . F 3 HOH 26 35 35 HOH HOH B . F 3 HOH 27 36 36 HOH HOH B . F 3 HOH 28 37 37 HOH HOH B . F 3 HOH 29 38 38 HOH HOH B . F 3 HOH 30 39 39 HOH HOH B . F 3 HOH 31 40 40 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A XGL 1 ? "O5'" ? A XGL 1 "O5'" 2 1 Y 1 B XGL 1 ? "O5'" ? B XGL 1 "O5'" # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELXL-97 refinement . ? 1 MAR345 'data collection' 345 ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 PHASER phasing . ? 5 # _cell.entry_id 2H0N _cell.length_a 41.455 _cell.length_b 41.455 _cell.length_c 65.580 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2H0N _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? # _exptl.entry_id 2H0N _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pdbx_details ;CRYSTALS WERE OBTAINED FROM A SOLUTION THAT CONTAINED CACODYLATE BUFFER, LICL, SRCL2, MGCL2, SPERMINE TETRACHLORIDE, AND MPD, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 289K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 CACODYLATE ? ? ? 1 2 1 LICL ? ? ? 1 3 1 SRCL2 ? ? ? 1 4 1 MGCL2 ? ? ? 1 5 1 SPERMINE ? ? ? 1 6 1 TETRACHLORIDE ? ? ? 1 7 1 MPD ? ? ? 1 8 1 H2O ? ? ? 1 9 2 CACODYLATE ? ? ? 1 10 2 LICL ? ? ? 1 11 2 SRCL2 ? ? ? 1 12 2 MGCL2 ? ? ? 1 13 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2005-03-18 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'triangular horizontal-focusing Si III monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.8126 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X11' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline X11 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.8126 # _reflns.entry_id 2H0N _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 20 _reflns.d_resolution_high 1.53 _reflns.number_obs 3396 _reflns.number_all 3416 _reflns.percent_possible_obs 98.6 _reflns.pdbx_Rmerge_I_obs 0.108 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 9.800 _reflns.B_iso_Wilson_estimate 11.5667 _reflns.pdbx_redundancy 15.0 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.53 _reflns_shell.d_res_low 1.58 _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_obs 0.376 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 5.58 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 333 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2H0N _refine.ls_number_reflns_obs 3396 _refine.ls_number_reflns_all 3396 _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 1.53 _refine.ls_percent_reflns_obs 98.5 _refine.ls_R_factor_obs 0.2004 _refine.ls_R_factor_all 0.2004 _refine.ls_R_factor_R_work 0.1581 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters 1620 _refine.ls_number_restraints 1514 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 20.210 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details 'CHAIN A AND B ARE REFINED AS BEING STATICALLY DISORDERED' _refine.pdbx_starting_model '1.60A P 32 1 2 STRUCTURE OF H(GTGTACAC) (NDB CODE HD0001) WAS USED AS MODEL' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model Isotropic _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case 'ALL OTHER CHEMICALLY EQUIVALENT BOND DISTANCES AND ANGLES WERE RESTRAINED TO BE SIMILAR BY SAME DISTANCE RESTRAINTS' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2H0N _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 80 _refine_analyze.occupancy_sum_hydrogen .00 _refine_analyze.occupancy_sum_non_hydrogen 201.67 _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 336 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 62 _refine_hist.number_atoms_total 406 _refine_hist.d_res_high 1.53 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.019 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.025 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.001 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.005 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 1.53 _refine_ls_shell.d_res_low 1.58 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.412 _refine_ls_shell.percent_reflns_obs 99.7 _refine_ls_shell.R_factor_R_free 0. _refine_ls_shell.R_factor_R_free_error 0 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 0 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 333 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine.entry_id 2H0N _pdbx_refine.R_factor_all_no_cutoff 0.2004 _pdbx_refine.R_factor_obs_no_cutoff 0.2004 _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff 0.1581 _pdbx_refine.R_factor_obs_4sig_cutoff 0.1581 _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff 1694 _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _database_PDB_matrix.entry_id 2H0N _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2H0N _struct.title 'Structure of the fully modified left-handed cyclohexene nucleic acid sequence GTGTACAC' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2H0N _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'CYCLOHEXENE NUCLEIC ACID, DNA ANALOGUE, LEFT-HANDED, DOUBLE HELIX, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2H0N _struct_ref.pdbx_db_accession 2H0N _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2H0N A 1 ? 8 ? 2H0N 1 ? 8 ? 1 8 2 1 2H0N B 1 ? 8 ? 2H0N 1 ? 8 ? 1 8 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2 A,C,E 2 1,3 B,D,F # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 16_545 y+1/3,x-1/3,-z+2/3 -0.5000000000 0.8660254038 0.0000000000 20.7275000000 0.8660254038 0.5000000000 0.0000000000 -11.9670277046 0.0000000000 0.0000000000 -1.0000000000 43.7200000000 3 'crystal symmetry operation' 11_445 x-y-1/3,-y-2/3,-z+1/3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -23.9340554093 0.0000000000 0.0000000000 -1.0000000000 21.8600000000 # loop_ _struct_biol.id _struct_biol.details 1 ? 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A XGL 1 "O3'" A ? ? 1_555 A XTL 2 P A ? A XGL 1 A XTL 2 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale2 covale both ? A XTL 2 "O3'" A ? ? 1_555 A XGL 3 P A ? A XTL 2 A XGL 3 1_555 ? ? ? ? ? ? ? 1.599 ? ? covale3 covale both ? A XGL 3 "O3'" A ? ? 1_555 A XTL 4 P A ? A XGL 3 A XTL 4 1_555 ? ? ? ? ? ? ? 1.593 ? ? covale4 covale both ? A XTL 4 "O3'" A ? ? 1_555 A XAL 5 P A ? A XTL 4 A XAL 5 1_555 ? ? ? ? ? ? ? 1.624 ? ? covale5 covale both ? A XAL 5 "O3'" A ? ? 1_555 A XCL 6 P A ? A XAL 5 A XCL 6 1_555 ? ? ? ? ? ? ? 1.593 ? ? covale6 covale both ? A XCL 6 "O3'" A ? ? 1_555 A XAL 7 P A ? A XCL 6 A XAL 7 1_555 ? ? ? ? ? ? ? 1.597 ? ? covale7 covale both ? A XAL 7 "O3'" A ? ? 1_555 A XCL 8 P A ? A XAL 7 A XCL 8 1_555 ? ? ? ? ? ? ? 1.614 ? ? covale8 covale one ? A XCL 8 "O3'" A ? ? 1_555 C 2HP . P A ? A XCL 8 A 2HP 9 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale9 covale both ? B XGL 1 "O3'" B ? ? 1_555 B XTL 2 P B ? B XGL 1 B XTL 2 1_555 ? ? ? ? ? ? ? 1.623 ? ? covale10 covale both ? B XTL 2 "O3'" B ? ? 1_555 B XGL 3 P B ? B XTL 2 B XGL 3 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale11 covale both ? B XGL 3 "O3'" B ? ? 1_555 B XTL 4 P B ? B XGL 3 B XTL 4 1_555 ? ? ? ? ? ? ? 1.578 ? ? covale12 covale both ? B XTL 4 "O3'" B ? ? 1_555 B XAL 5 P B ? B XTL 4 B XAL 5 1_555 ? ? ? ? ? ? ? 1.627 ? ? covale13 covale both ? B XAL 5 "O3'" B ? ? 1_555 B XCL 6 P B ? B XAL 5 B XCL 6 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale14 covale both ? B XCL 6 "O3'" B ? ? 1_555 B XAL 7 P B ? B XCL 6 B XAL 7 1_555 ? ? ? ? ? ? ? 1.589 ? ? covale15 covale both ? B XAL 7 "O3'" B ? ? 1_555 B XCL 8 P B ? B XAL 7 B XCL 8 1_555 ? ? ? ? ? ? ? 1.591 ? ? covale16 covale one ? B XCL 8 "O3'" B ? ? 1_555 D 2HP . P B ? B XCL 8 B 2HP 9 1_555 ? ? ? ? ? ? ? 1.607 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 2HP 9 ? 7 'BINDING SITE FOR RESIDUE 2HP A 9' AC2 Software B 2HP 9 ? 7 'BINDING SITE FOR RESIDUE 2HP B 9' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 XGL A 1 ? XGL A 1 . ? 8_445 ? 2 AC1 7 XCL A 8 ? XCL A 8 . ? 1_555 ? 3 AC1 7 HOH E . ? HOH A 17 . ? 1_555 ? 4 AC1 7 XTL B 4 ? XTL B 4 . ? 16_545 ? 5 AC1 7 XAL B 5 ? XAL B 5 . ? 16_545 ? 6 AC1 7 HOH F . ? HOH B 21 . ? 16_545 ? 7 AC1 7 HOH F . ? HOH B 39 . ? 16_545 ? 8 AC2 7 XTL A 4 ? XTL A 4 . ? 11_445 ? 9 AC2 7 XAL A 5 ? XAL A 5 . ? 11_445 ? 10 AC2 7 HOH E . ? HOH A 21 . ? 11_445 ? 11 AC2 7 HOH E . ? HOH A 39 . ? 11_445 ? 12 AC2 7 XGL B 1 ? XGL B 1 . ? 15_544 ? 13 AC2 7 XCL B 8 ? XCL B 8 . ? 1_555 ? 14 AC2 7 HOH F . ? HOH B 17 . ? 1_555 ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "C3'" _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 XAL _pdbx_validate_rmsd_angle.auth_seq_id_1 5 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 A _pdbx_validate_rmsd_angle.auth_atom_id_2 "O3'" _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 XAL _pdbx_validate_rmsd_angle.auth_seq_id_2 5 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 A _pdbx_validate_rmsd_angle.auth_atom_id_3 P _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 XCL _pdbx_validate_rmsd_angle.auth_seq_id_3 6 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 A _pdbx_validate_rmsd_angle.angle_value 127.76 _pdbx_validate_rmsd_angle.angle_target_value 119.70 _pdbx_validate_rmsd_angle.angle_deviation 8.06 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.20 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A XGL 1 A XGL 1 ? DG ? 2 A XTL 2 A XTL 2 ? DT ? 3 A XGL 3 A XGL 3 ? DG ? 4 A XTL 4 A XTL 4 ? DT ? 5 A XAL 5 A XAL 5 ? DA ? 6 A XCL 6 A XCL 6 ? DC ? 7 A XAL 7 A XAL 7 ? DA ? 8 A XCL 8 A XCL 8 ? DC ? 9 B XGL 1 B XGL 1 ? DG ? 10 B XTL 2 B XTL 2 ? DT ? 11 B XGL 3 B XGL 3 ? DG ? 12 B XTL 4 B XTL 4 ? DT ? 13 B XAL 5 B XAL 5 ? DA ? 14 B XCL 6 B XCL 6 ? DC ? 15 B XAL 7 B XAL 7 ? DA ? 16 B XCL 8 B XCL 8 ? DC ? # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 10 ? E HOH . 2 1 A HOH 11 ? E HOH . 3 1 B HOH 10 ? F HOH . 4 1 B HOH 11 ? F HOH . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 2HP P P N N 1 2HP O1 O N N 2 2HP O2 O N N 3 2HP O3 O N N 4 2HP O4 O N N 5 2HP HO3 H N N 6 2HP HO4 H N N 7 HOH O O N N 8 HOH H1 H N N 9 HOH H2 H N N 10 XAL P P N N 11 XAL OP1 O N N 12 XAL OP2 O N N 13 XAL "O5'" O N N 14 XAL "C5'" C N N 15 XAL "C4'" C N S 16 XAL "C6'" C N N 17 XAL "C7'" C N N 18 XAL "C3'" C N R 19 XAL "O3'" O N N 20 XAL "C2'" C N N 21 XAL "C1'" C N R 22 XAL N9 N Y N 23 XAL C8 C Y N 24 XAL N7 N Y N 25 XAL C6 C Y N 26 XAL N6 N N N 27 XAL C5 C Y N 28 XAL C4 C Y N 29 XAL N3 N Y N 30 XAL C2 C Y N 31 XAL N1 N Y N 32 XAL OP3 O N N 33 XAL HOP2 H N N 34 XAL "H5'" H N N 35 XAL "H5''" H N N 36 XAL "H4'" H N N 37 XAL "H6'" H N N 38 XAL "H7'" H N N 39 XAL "H3'" H N N 40 XAL "HO3'" H N N 41 XAL "H2'" H N N 42 XAL "H2''" H N N 43 XAL "H1'" H N N 44 XAL H8 H N N 45 XAL HN61 H N N 46 XAL HN62 H N N 47 XAL H2 H N N 48 XAL HOP3 H N N 49 XCL P P N N 50 XCL OP1 O N N 51 XCL OP2 O N N 52 XCL "O5'" O N N 53 XCL "C5'" C N N 54 XCL "C4'" C N S 55 XCL "C6'" C N N 56 XCL "C7'" C N N 57 XCL "C3'" C N R 58 XCL "O3'" O N N 59 XCL "C2'" C N N 60 XCL "C1'" C N R 61 XCL C6 C N N 62 XCL C5 C N N 63 XCL C4 C N N 64 XCL N4 N N N 65 XCL N3 N N N 66 XCL C2 C N N 67 XCL O2 O N N 68 XCL N1 N N N 69 XCL OP3 O N N 70 XCL HOP2 H N N 71 XCL "H5'" H N N 72 XCL "H5''" H N N 73 XCL "H4'" H N N 74 XCL "H6'" H N N 75 XCL "H7'" H N N 76 XCL "H3'" H N N 77 XCL "HO3'" H N N 78 XCL "H2'" H N N 79 XCL "H2''" H N N 80 XCL "H1'" H N N 81 XCL H6 H N N 82 XCL H5 H N N 83 XCL HN41 H N N 84 XCL HN42 H N N 85 XCL HOP3 H N N 86 XGL P P N N 87 XGL OP1 O N N 88 XGL OP2 O N N 89 XGL "O5'" O N N 90 XGL "C5'" C N N 91 XGL "C4'" C N S 92 XGL "C6'" C N N 93 XGL "C7'" C N N 94 XGL "C3'" C N R 95 XGL "O3'" O N N 96 XGL "C2'" C N N 97 XGL "C1'" C N R 98 XGL N9 N Y N 99 XGL C8 C Y N 100 XGL N7 N Y N 101 XGL C6 C N N 102 XGL O6 O N N 103 XGL C5 C Y N 104 XGL C4 C Y N 105 XGL N3 N N N 106 XGL C2 C N N 107 XGL N2 N N N 108 XGL N1 N N N 109 XGL OP3 O N N 110 XGL HOP2 H N N 111 XGL "H5'" H N N 112 XGL "H5''" H N N 113 XGL "H4'" H N N 114 XGL "H6'" H N N 115 XGL "H7'" H N N 116 XGL "H3'" H N N 117 XGL "HO3'" H N N 118 XGL "H2'" H N N 119 XGL "H2''" H N N 120 XGL "H1'" H N N 121 XGL H8 H N N 122 XGL HN21 H N N 123 XGL HN22 H N N 124 XGL HN1 H N N 125 XGL HOP3 H N N 126 XTL P P N N 127 XTL OP1 O N N 128 XTL OP2 O N N 129 XTL "O5'" O N N 130 XTL "C5'" C N N 131 XTL "C4'" C N S 132 XTL "C6'" C N N 133 XTL "C7'" C N N 134 XTL "C3'" C N R 135 XTL "O3'" O N N 136 XTL "C2'" C N N 137 XTL "C1'" C N R 138 XTL C6 C N N 139 XTL C5 C N N 140 XTL C5M C N N 141 XTL C4 C N N 142 XTL O4 O N N 143 XTL N3 N N N 144 XTL C2 C N N 145 XTL O2 O N N 146 XTL N1 N N N 147 XTL OP3 O N N 148 XTL HOP2 H N N 149 XTL "H5'" H N N 150 XTL "H5''" H N N 151 XTL "H4'" H N N 152 XTL "H6'" H N N 153 XTL "H7'" H N N 154 XTL "H3'" H N N 155 XTL "HO3'" H N N 156 XTL "H2'" H N N 157 XTL "H2''" H N N 158 XTL "H1'" H N N 159 XTL H6 H N N 160 XTL H71 H N N 161 XTL H72 H N N 162 XTL H73 H N N 163 XTL HN3 H N N 164 XTL HOP3 H N N 165 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2HP P O1 doub N N 1 2HP P O2 sing N N 2 2HP P O3 sing N N 3 2HP P O4 sing N N 4 2HP O3 HO3 sing N N 5 2HP O4 HO4 sing N N 6 HOH O H1 sing N N 7 HOH O H2 sing N N 8 XAL P OP1 doub N N 9 XAL P OP2 sing N N 10 XAL P "O5'" sing N N 11 XAL P OP3 sing N N 12 XAL OP2 HOP2 sing N N 13 XAL "O5'" "C5'" sing N N 14 XAL "C5'" "C4'" sing N N 15 XAL "C5'" "H5'" sing N N 16 XAL "C5'" "H5''" sing N N 17 XAL "C4'" "C6'" sing N N 18 XAL "C4'" "C3'" sing N N 19 XAL "C4'" "H4'" sing N N 20 XAL "C6'" "C7'" doub N N 21 XAL "C6'" "H6'" sing N N 22 XAL "C7'" "C1'" sing N N 23 XAL "C7'" "H7'" sing N N 24 XAL "C3'" "O3'" sing N N 25 XAL "C3'" "C2'" sing N N 26 XAL "C3'" "H3'" sing N N 27 XAL "O3'" "HO3'" sing N N 28 XAL "C2'" "C1'" sing N N 29 XAL "C2'" "H2'" sing N N 30 XAL "C2'" "H2''" sing N N 31 XAL "C1'" N9 sing N N 32 XAL "C1'" "H1'" sing N N 33 XAL N9 C8 sing Y N 34 XAL N9 C4 sing Y N 35 XAL C8 N7 doub Y N 36 XAL C8 H8 sing N N 37 XAL N7 C5 sing Y N 38 XAL C6 N6 sing N N 39 XAL C6 C5 sing Y N 40 XAL C6 N1 doub Y N 41 XAL N6 HN61 sing N N 42 XAL N6 HN62 sing N N 43 XAL C5 C4 doub Y N 44 XAL C4 N3 sing Y N 45 XAL N3 C2 doub Y N 46 XAL C2 N1 sing Y N 47 XAL C2 H2 sing N N 48 XAL OP3 HOP3 sing N N 49 XCL P OP1 doub N N 50 XCL P OP2 sing N N 51 XCL P "O5'" sing N N 52 XCL P OP3 sing N N 53 XCL OP2 HOP2 sing N N 54 XCL "O5'" "C5'" sing N N 55 XCL "C5'" "C4'" sing N N 56 XCL "C5'" "H5'" sing N N 57 XCL "C5'" "H5''" sing N N 58 XCL "C4'" "C6'" sing N N 59 XCL "C4'" "C3'" sing N N 60 XCL "C4'" "H4'" sing N N 61 XCL "C6'" "C7'" doub N N 62 XCL "C6'" "H6'" sing N N 63 XCL "C7'" "C1'" sing N N 64 XCL "C7'" "H7'" sing N N 65 XCL "C3'" "O3'" sing N N 66 XCL "C3'" "C2'" sing N N 67 XCL "C3'" "H3'" sing N N 68 XCL "O3'" "HO3'" sing N N 69 XCL "C2'" "C1'" sing N N 70 XCL "C2'" "H2'" sing N N 71 XCL "C2'" "H2''" sing N N 72 XCL "C1'" N1 sing N N 73 XCL "C1'" "H1'" sing N N 74 XCL C6 C5 doub N N 75 XCL C6 N1 sing N N 76 XCL C6 H6 sing N N 77 XCL C5 C4 sing N N 78 XCL C5 H5 sing N N 79 XCL C4 N4 sing N N 80 XCL C4 N3 doub N N 81 XCL N4 HN41 sing N N 82 XCL N4 HN42 sing N N 83 XCL N3 C2 sing N N 84 XCL C2 O2 doub N N 85 XCL C2 N1 sing N N 86 XCL OP3 HOP3 sing N N 87 XGL P OP1 doub N N 88 XGL P OP2 sing N N 89 XGL P "O5'" sing N N 90 XGL P OP3 sing N N 91 XGL OP2 HOP2 sing N N 92 XGL "O5'" "C5'" sing N N 93 XGL "C5'" "C4'" sing N N 94 XGL "C5'" "H5'" sing N N 95 XGL "C5'" "H5''" sing N N 96 XGL "C4'" "C6'" sing N N 97 XGL "C4'" "C3'" sing N N 98 XGL "C4'" "H4'" sing N N 99 XGL "C6'" "C7'" doub N N 100 XGL "C6'" "H6'" sing N N 101 XGL "C7'" "C1'" sing N N 102 XGL "C7'" "H7'" sing N N 103 XGL "C3'" "O3'" sing N N 104 XGL "C3'" "C2'" sing N N 105 XGL "C3'" "H3'" sing N N 106 XGL "O3'" "HO3'" sing N N 107 XGL "C2'" "C1'" sing N N 108 XGL "C2'" "H2'" sing N N 109 XGL "C2'" "H2''" sing N N 110 XGL "C1'" N9 sing N N 111 XGL "C1'" "H1'" sing N N 112 XGL N9 C8 sing Y N 113 XGL N9 C4 sing Y N 114 XGL C8 N7 doub Y N 115 XGL C8 H8 sing N N 116 XGL N7 C5 sing Y N 117 XGL C6 O6 doub N N 118 XGL C6 C5 sing N N 119 XGL C6 N1 sing N N 120 XGL C5 C4 doub Y N 121 XGL C4 N3 sing N N 122 XGL N3 C2 doub N N 123 XGL C2 N2 sing N N 124 XGL C2 N1 sing N N 125 XGL N2 HN21 sing N N 126 XGL N2 HN22 sing N N 127 XGL N1 HN1 sing N N 128 XGL OP3 HOP3 sing N N 129 XTL P OP1 doub N N 130 XTL P OP2 sing N N 131 XTL P "O5'" sing N N 132 XTL P OP3 sing N N 133 XTL OP2 HOP2 sing N N 134 XTL "O5'" "C5'" sing N N 135 XTL "C5'" "C4'" sing N N 136 XTL "C5'" "H5'" sing N N 137 XTL "C5'" "H5''" sing N N 138 XTL "C4'" "C6'" sing N N 139 XTL "C4'" "C3'" sing N N 140 XTL "C4'" "H4'" sing N N 141 XTL "C6'" "C7'" doub N N 142 XTL "C6'" "H6'" sing N N 143 XTL "C7'" "C1'" sing N N 144 XTL "C7'" "H7'" sing N N 145 XTL "C3'" "O3'" sing N N 146 XTL "C3'" "C2'" sing N N 147 XTL "C3'" "H3'" sing N N 148 XTL "O3'" "HO3'" sing N N 149 XTL "C2'" "C1'" sing N N 150 XTL "C2'" "H2'" sing N N 151 XTL "C2'" "H2''" sing N N 152 XTL "C1'" N1 sing N N 153 XTL "C1'" "H1'" sing N N 154 XTL C6 C5 doub N N 155 XTL C6 N1 sing N N 156 XTL C6 H6 sing N N 157 XTL C5 C5M sing N N 158 XTL C5 C4 sing N N 159 XTL C5M H71 sing N N 160 XTL C5M H72 sing N N 161 XTL C5M H73 sing N N 162 XTL C4 O4 doub N N 163 XTL C4 N3 sing N N 164 XTL N3 C2 sing N N 165 XTL N3 HN3 sing N N 166 XTL C2 O2 doub N N 167 XTL C2 N1 sing N N 168 XTL OP3 HOP3 sing N N 169 # _pdbx_initial_refinement_model.accession_code 481D _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.details '1.60 A P 32 1 2 STRUCTURE OF H(GTGTACAC) (NDB CODE HD0001) WAS USED AS MODEL' # _atom_sites.entry_id 2H0N _atom_sites.fract_transf_matrix[1][1] 0.024123 _atom_sites.fract_transf_matrix[1][2] 0.013927 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.027854 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015249 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_