data_2H0S # _entry.id 2H0S # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2H0S pdb_00002h0s 10.2210/pdb2h0s/pdb NDB UR0091 ? ? RCSB RCSB037786 ? ? WWPDB D_1000037786 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-09-26 2 'Structure model' 1 1 2008-04-02 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_conn_type 7 4 'Structure model' struct_ref_seq_dif 8 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.value' 18 4 'Structure model' '_struct_conn.conn_type_id' 19 4 'Structure model' '_struct_conn.id' 20 4 'Structure model' '_struct_conn.pdbx_dist_value' 21 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 22 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 23 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 24 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 29 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 30 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 31 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 32 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 33 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 34 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 35 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 36 4 'Structure model' '_struct_conn_type.id' 37 4 'Structure model' '_struct_ref_seq_dif.details' 38 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 39 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 40 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 2H0S _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.recvd_initial_deposition_date 2006-05-15 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry N _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2GCS . unspecified PDB 2GCV . unspecified PDB 2H0W . unspecified PDB 2H0X . unspecified PDB 2H0Z . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Klein, D.J.' 1 ;Ferre-D'Amare, A.R. ; 2 # _citation.id primary _citation.title 'Structural basis of glmS ribozyme activation by glucosamine-6-phosphate' _citation.journal_abbrev Science _citation.journal_volume 313 _citation.page_first 1752 _citation.page_last 1756 _citation.year 2006 _citation.journal_id_ASTM SCIEAS _citation.country US _citation.journal_id_ISSN 0036-8075 _citation.journal_id_CSD 0038 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16990543 _citation.pdbx_database_id_DOI 10.1126/science.1129666 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Klein, D.J.' 1 ? primary ;Ferre-D'Amare, A.R. ; 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'glmS ribozyme deoxy RNA inhibitor' 9048.271 1 ? ? ? 'adenosine -1 is deoxy, its O2* is not missing' 2 polymer syn 'glmS ribozyme RNA' 40598.070 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 5 ? ? ? ? 4 water nat water 18.015 72 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polydeoxyribonucleotide/polyribonucleotide hybrid' no yes 'A(DA)GCGCCUGGACU(IU)AAAGCCAUUGCACU' AAGCGCCUGGACUUAAAGCCAUUGCACU A ? 2 polyribonucleotide no yes ;CCGGCUUUAAGUUGACGAGGGCAGGGUUUAUCGAGACAUCGGCGGGUGCCCUGCGGUCUUCCUGCGACCGUUAGAGGACU GGUAAAACCACAGGCGACUGUGGCAUAGAGCAGUCCGGGCAGGA(A23) ; ;CCGGCUUUAAGUUGACGAGGGCAGGGUUUAUCGAGACAUCGGCGGGUGCCCUGCGGUCUUCCUGCGACCGUUAGAGGACU GGUAAAACCACAGGCGACUGUGGCAUAGAGCAGUCCGGGCAGGAA ; B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 A n 1 2 DA n 1 3 G n 1 4 C n 1 5 G n 1 6 C n 1 7 C n 1 8 U n 1 9 G n 1 10 G n 1 11 A n 1 12 C n 1 13 U n 1 14 IU n 1 15 A n 1 16 A n 1 17 A n 1 18 G n 1 19 C n 1 20 C n 1 21 A n 1 22 U n 1 23 U n 1 24 G n 1 25 C n 1 26 A n 1 27 C n 1 28 U n 2 1 C n 2 2 C n 2 3 G n 2 4 G n 2 5 C n 2 6 U n 2 7 U n 2 8 U n 2 9 A n 2 10 A n 2 11 G n 2 12 U n 2 13 U n 2 14 G n 2 15 A n 2 16 C n 2 17 G n 2 18 A n 2 19 G n 2 20 G n 2 21 G n 2 22 C n 2 23 A n 2 24 G n 2 25 G n 2 26 G n 2 27 U n 2 28 U n 2 29 U n 2 30 A n 2 31 U n 2 32 C n 2 33 G n 2 34 A n 2 35 G n 2 36 A n 2 37 C n 2 38 A n 2 39 U n 2 40 C n 2 41 G n 2 42 G n 2 43 C n 2 44 G n 2 45 G n 2 46 G n 2 47 U n 2 48 G n 2 49 C n 2 50 C n 2 51 C n 2 52 U n 2 53 G n 2 54 C n 2 55 G n 2 56 G n 2 57 U n 2 58 C n 2 59 U n 2 60 U n 2 61 C n 2 62 C n 2 63 U n 2 64 G n 2 65 C n 2 66 G n 2 67 A n 2 68 C n 2 69 C n 2 70 G n 2 71 U n 2 72 U n 2 73 A n 2 74 G n 2 75 A n 2 76 G n 2 77 G n 2 78 A n 2 79 C n 2 80 U n 2 81 G n 2 82 G n 2 83 U n 2 84 A n 2 85 A n 2 86 A n 2 87 A n 2 88 C n 2 89 C n 2 90 A n 2 91 C n 2 92 A n 2 93 G n 2 94 G n 2 95 C n 2 96 G n 2 97 A n 2 98 C n 2 99 U n 2 100 G n 2 101 U n 2 102 G n 2 103 G n 2 104 C n 2 105 A n 2 106 U n 2 107 A n 2 108 G n 2 109 A n 2 110 G n 2 111 C n 2 112 A n 2 113 G n 2 114 U n 2 115 C n 2 116 C n 2 117 G n 2 118 G n 2 119 G n 2 120 C n 2 121 A n 2 122 G n 2 123 G n 2 124 A n 2 125 A23 n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'This sequence occurs naturally in Thermoanaerobacter tengcongensis' 2 1 sample ? ? ? ? ? 'RNA produced by in vitro transcription. This sequence occurs naturally in Thermoanaerobacter tengcongensis' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 A23 'RNA linking' n ;ADENOSINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE ; ? 'C10 H13 N5 O9 P2' 409.186 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 IU 'RNA linking' n "5-IODOURIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 I N2 O9 P' 450.078 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 A 1 -2 -2 A A A . n A 1 2 DA 2 -1 -1 DA A A . n A 1 3 G 3 1 1 G G A . n A 1 4 C 4 2 2 C C A . n A 1 5 G 5 3 3 G G A . n A 1 6 C 6 4 4 C C A . n A 1 7 C 7 5 5 C C A . n A 1 8 U 8 6 6 U U A . n A 1 9 G 9 7 7 G G A . n A 1 10 G 10 8 8 G G A . n A 1 11 A 11 9 9 A A A . n A 1 12 C 12 10 10 C C A . n A 1 13 U 13 11 11 U U A . n A 1 14 IU 14 12 12 IU IU A . n A 1 15 A 15 13 13 A A A . n A 1 16 A 16 14 14 A A A . n A 1 17 A 17 15 15 A A A . n A 1 18 G 18 16 16 G G A . n A 1 19 C 19 17 17 C C A . n A 1 20 C 20 18 18 C C A . n A 1 21 A 21 19 19 A A A . n A 1 22 U 22 20 20 U U A . n A 1 23 U 23 21 ? ? ? A . n A 1 24 G 24 22 ? ? ? A . n A 1 25 C 25 23 ? ? ? A . n A 1 26 A 26 24 ? ? ? A . n A 1 27 C 27 25 ? ? ? A . n A 1 28 U 28 26 ? ? ? A . n B 2 1 C 1 21 ? ? ? B . n B 2 2 C 2 22 ? ? ? B . n B 2 3 G 3 23 23 G G B . n B 2 4 G 4 24 24 G G B . n B 2 5 C 5 25 25 C C B . n B 2 6 U 6 26 26 U U B . n B 2 7 U 7 27 27 U U B . n B 2 8 U 8 28 28 U U B . n B 2 9 A 9 29 29 A A B . n B 2 10 A 10 30 30 A A B . n B 2 11 G 11 31 31 G G B . n B 2 12 U 12 32 32 U U B . n B 2 13 U 13 33 33 U U B . n B 2 14 G 14 34 34 G G B . n B 2 15 A 15 35 35 A A B . n B 2 16 C 16 36 36 C C B . n B 2 17 G 17 37 37 G G B . n B 2 18 A 18 38 38 A A B . n B 2 19 G 19 39 39 G G B . n B 2 20 G 20 40 40 G G B . n B 2 21 G 21 41 41 G G B . n B 2 22 C 22 42 42 C C B . n B 2 23 A 23 43 43 A A B . n B 2 24 G 24 44 44 G G B . n B 2 25 G 25 45 45 G G B . n B 2 26 G 26 46 46 G G B . n B 2 27 U 27 47 47 U U B . n B 2 28 U 28 48 48 U U B . n B 2 29 U 29 49 49 U U B . n B 2 30 A 30 50 50 A A B . n B 2 31 U 31 51 51 U U B . n B 2 32 C 32 52 52 C C B . n B 2 33 G 33 53 53 G G B . n B 2 34 A 34 54 54 A A B . n B 2 35 G 35 55 55 G G B . n B 2 36 A 36 56 56 A A B . n B 2 37 C 37 57 57 C C B . n B 2 38 A 38 58 58 A A B . n B 2 39 U 39 59 59 U U B . n B 2 40 C 40 60 60 C C B . n B 2 41 G 41 61 61 G G B . n B 2 42 G 42 62 62 G G B . n B 2 43 C 43 63 63 C C B . n B 2 44 G 44 64 64 G G B . n B 2 45 G 45 65 65 G G B . n B 2 46 G 46 66 66 G G B . n B 2 47 U 47 67 67 U U B . n B 2 48 G 48 68 68 G G B . n B 2 49 C 49 69 69 C C B . n B 2 50 C 50 70 70 C C B . n B 2 51 C 51 71 71 C C B . n B 2 52 U 52 72 72 U U B . n B 2 53 G 53 73 73 G G B . n B 2 54 C 54 74 74 C C B . n B 2 55 G 55 75 75 G G B . n B 2 56 G 56 76 76 G G B . n B 2 57 U 57 77 77 U U B . n B 2 58 C 58 78 78 C C B . n B 2 59 U 59 79 79 U U B . n B 2 60 U 60 80 80 U U B . n B 2 61 C 61 81 81 C C B . n B 2 62 C 62 82 82 C C B . n B 2 63 U 63 83 83 U U B . n B 2 64 G 64 84 84 G G B . n B 2 65 C 65 85 85 C C B . n B 2 66 G 66 86 86 G G B . n B 2 67 A 67 87 87 A A B . n B 2 68 C 68 88 88 C C B . n B 2 69 C 69 89 89 C C B . n B 2 70 G 70 90 90 G G B . n B 2 71 U 71 91 91 U U B . n B 2 72 U 72 92 92 U U B . n B 2 73 A 73 93 93 A A B . n B 2 74 G 74 94 94 G G B . n B 2 75 A 75 95 95 A A B . n B 2 76 G 76 96 96 G G B . n B 2 77 G 77 97 97 G G B . n B 2 78 A 78 98 98 A A B . n B 2 79 C 79 99 99 C C B . n B 2 80 U 80 100 100 U U B . n B 2 81 G 81 101 101 G G B . n B 2 82 G 82 102 102 G G B . n B 2 83 U 83 103 103 U U B . n B 2 84 A 84 104 104 A A B . n B 2 85 A 85 105 105 A A B . n B 2 86 A 86 106 106 A A B . n B 2 87 A 87 107 107 A A B . n B 2 88 C 88 108 108 C C B . n B 2 89 C 89 109 109 C C B . n B 2 90 A 90 110 110 A A B . n B 2 91 C 91 111 111 C C B . n B 2 92 A 92 112 112 A A B . n B 2 93 G 93 113 113 G G B . n B 2 94 G 94 114 114 G G B . n B 2 95 C 95 115 115 C C B . n B 2 96 G 96 116 116 G G B . n B 2 97 A 97 117 117 A A B . n B 2 98 C 98 118 118 C C B . n B 2 99 U 99 119 119 U U B . n B 2 100 G 100 120 120 G G B . n B 2 101 U 101 121 121 U U B . n B 2 102 G 102 122 122 G G B . n B 2 103 G 103 123 123 G G B . n B 2 104 C 104 124 124 C C B . n B 2 105 A 105 125 125 A A B . n B 2 106 U 106 126 126 U U B . n B 2 107 A 107 127 127 A A B . n B 2 108 G 108 128 128 G G B . n B 2 109 A 109 129 129 A A B . n B 2 110 G 110 130 130 G G B . n B 2 111 C 111 131 131 C C B . n B 2 112 A 112 132 132 A A B . n B 2 113 G 113 133 133 G G B . n B 2 114 U 114 134 134 U U B . n B 2 115 C 115 135 135 C C B . n B 2 116 C 116 136 136 C C B . n B 2 117 G 117 137 137 G G B . n B 2 118 G 118 138 138 G G B . n B 2 119 G 119 139 139 G G B . n B 2 120 C 120 140 140 C C B . n B 2 121 A 121 141 141 A A B . n B 2 122 G 122 142 142 G G B . n B 2 123 G 123 143 143 G G B . n B 2 124 A 124 144 144 A A B . n B 2 125 A23 125 145 145 A23 A23 B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG 1 301 301 MG MG B . D 3 MG 1 302 302 MG MG B . E 3 MG 1 303 303 MG MG B . F 3 MG 1 304 304 MG MG B . G 3 MG 1 305 305 MG MG B . H 4 HOH 1 201 201 HOH HOH A . H 4 HOH 2 202 202 HOH HOH A . H 4 HOH 3 205 205 HOH HOH A . H 4 HOH 4 229 229 HOH HOH A . H 4 HOH 5 236 236 HOH HOH A . H 4 HOH 6 245 245 HOH HOH A . H 4 HOH 7 249 249 HOH HOH A . H 4 HOH 8 250 250 HOH HOH A . H 4 HOH 9 266 266 HOH HOH A . I 4 HOH 1 203 203 HOH HOH B . I 4 HOH 2 204 204 HOH HOH B . I 4 HOH 3 206 206 HOH HOH B . I 4 HOH 4 207 207 HOH HOH B . I 4 HOH 5 208 208 HOH HOH B . I 4 HOH 6 209 209 HOH HOH B . I 4 HOH 7 210 210 HOH HOH B . I 4 HOH 8 211 211 HOH HOH B . I 4 HOH 9 212 212 HOH HOH B . I 4 HOH 10 213 213 HOH HOH B . I 4 HOH 11 214 214 HOH HOH B . I 4 HOH 12 215 215 HOH HOH B . I 4 HOH 13 216 216 HOH HOH B . I 4 HOH 14 217 217 HOH HOH B . I 4 HOH 15 218 218 HOH HOH B . I 4 HOH 16 219 219 HOH HOH B . I 4 HOH 17 220 220 HOH HOH B . I 4 HOH 18 221 221 HOH HOH B . I 4 HOH 19 222 222 HOH HOH B . I 4 HOH 20 223 223 HOH HOH B . I 4 HOH 21 224 224 HOH HOH B . I 4 HOH 22 225 225 HOH HOH B . I 4 HOH 23 226 226 HOH HOH B . I 4 HOH 24 227 227 HOH HOH B . I 4 HOH 25 228 228 HOH HOH B . I 4 HOH 26 230 230 HOH HOH B . I 4 HOH 27 231 231 HOH HOH B . I 4 HOH 28 232 232 HOH HOH B . I 4 HOH 29 233 233 HOH HOH B . I 4 HOH 30 234 234 HOH HOH B . I 4 HOH 31 235 235 HOH HOH B . I 4 HOH 32 237 237 HOH HOH B . I 4 HOH 33 238 238 HOH HOH B . I 4 HOH 34 239 239 HOH HOH B . I 4 HOH 35 240 240 HOH HOH B . I 4 HOH 36 241 241 HOH HOH B . I 4 HOH 37 242 242 HOH HOH B . I 4 HOH 38 243 243 HOH HOH B . I 4 HOH 39 244 244 HOH HOH B . I 4 HOH 40 246 246 HOH HOH B . I 4 HOH 41 247 247 HOH HOH B . I 4 HOH 42 248 248 HOH HOH B . I 4 HOH 43 251 251 HOH HOH B . I 4 HOH 44 252 252 HOH HOH B . I 4 HOH 45 253 253 HOH HOH B . I 4 HOH 46 254 254 HOH HOH B . I 4 HOH 47 255 255 HOH HOH B . I 4 HOH 48 256 256 HOH HOH B . I 4 HOH 49 257 257 HOH HOH B . I 4 HOH 50 258 258 HOH HOH B . I 4 HOH 51 259 259 HOH HOH B . I 4 HOH 52 260 260 HOH HOH B . I 4 HOH 53 261 261 HOH HOH B . I 4 HOH 54 262 262 HOH HOH B . I 4 HOH 55 263 263 HOH HOH B . I 4 HOH 56 264 264 HOH HOH B . I 4 HOH 57 265 265 HOH HOH B . I 4 HOH 58 267 267 HOH HOH B . I 4 HOH 59 268 268 HOH HOH B . I 4 HOH 60 269 269 HOH HOH B . I 4 HOH 61 270 270 HOH HOH B . I 4 HOH 62 271 271 HOH HOH B . I 4 HOH 63 272 272 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A U 6 ? N1 ? A U 8 N1 2 1 Y 1 A U 6 ? C2 ? A U 8 C2 3 1 Y 1 A U 6 ? O2 ? A U 8 O2 4 1 Y 1 A U 6 ? N3 ? A U 8 N3 5 1 Y 1 A U 6 ? C4 ? A U 8 C4 6 1 Y 1 A U 6 ? O4 ? A U 8 O4 7 1 Y 1 A U 6 ? C5 ? A U 8 C5 8 1 Y 1 A U 6 ? C6 ? A U 8 C6 9 1 Y 1 B U 103 ? N1 ? B U 83 N1 10 1 Y 1 B U 103 ? C2 ? B U 83 C2 11 1 Y 1 B U 103 ? O2 ? B U 83 O2 12 1 Y 1 B U 103 ? N3 ? B U 83 N3 13 1 Y 1 B U 103 ? C4 ? B U 83 C4 14 1 Y 1 B U 103 ? O4 ? B U 83 O4 15 1 Y 1 B U 103 ? C5 ? B U 83 C5 16 1 Y 1 B U 103 ? C6 ? B U 83 C6 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 CNS refinement . ? 2 SCALEPACK 'data scaling' . ? 3 CNS phasing . ? 4 # _cell.entry_id 2H0S _cell.length_a 180.540 _cell.length_b 41.260 _cell.length_c 71.404 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2H0S _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 18 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.entry_id 2H0S _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.68 _exptl_crystal.density_percent_sol 54.06 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pdbx_details '14% PEG 4000, 1M LiCl, 100mM MES-NaOH pH 5.6, 5mM MgCl2, 4mM GlcN6P, VAPOR DIFFUSION, SITTING DROP, temperature 295K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'PEG 4000' ? ? ? 1 2 1 LiCl ? ? ? 1 3 1 MES-NaOH ? ? ? 1 4 1 MgCl2 ? ? ? 1 5 1 GlcN6P, ? ? ? 1 6 2 'PEG 4000' ? ? ? 1 7 2 LiCl ? ? ? 1 8 2 MES-NaOH ? ? ? 1 9 2 MgCl2 ? ? ? 1 10 2 GlcN6P ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2006-02-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double-crystal, Si(111) liquid N2 cooled' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.2155 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.2155 # _reflns.entry_id 2H0S _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2.35 _reflns.d_resolution_low 30 _reflns.number_all 21613 _reflns.number_obs 21613 _reflns.percent_possible_obs 93.3 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.35 _reflns_shell.d_res_low 2.43 _reflns_shell.percent_possible_all 63.0 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2H0S _refine.ls_d_res_high 2.35 _refine.ls_d_res_low 30.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 21556 _refine.ls_number_reflns_obs 21556 _refine.ls_number_reflns_R_free 2077 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_work 0.218 _refine.ls_R_factor_R_free 0.25 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free 9.6 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct MIR _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.solvent_model_details 'A solvent density level of 0.35 and solvent B-factor of 20 were used for the bulk solvent during refinement' _refine.occupancy_max ? _refine.occupancy_min ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.details ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2H0S _refine_analyze.Luzzati_coordinate_error_obs 0.36 _refine_analyze.Luzzati_sigma_a_obs 0.37 _refine_analyze.Luzzati_d_res_low_obs 5.0 _refine_analyze.Luzzati_coordinate_error_free 0.41 _refine_analyze.Luzzati_sigma_a_free 0.42 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 3099 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 72 _refine_hist.number_atoms_total 3176 _refine_hist.d_res_high 2.35 _refine_hist.d_res_low 30.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.0041 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.18 ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 2H0S _struct.title 'Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2H0S _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RNA, Ribozyme, Pseudoknot, Helix' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 4 ? I N N 4 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 2 GB AE013165 20517198 2582 ;GGCUUUAAGUUGACGAGGGCAGGGUUUAUCGAGACAUCGGCGGGUGCCCUGCGGUCUUCCUGCGACCGUUAGAGGACUGG UAAAACCACAGGCGACUGUGGCAUAGAGCAGUCCGGGCAGGAA ; ? 2 1 PDB 2H0S 2H0S ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2H0S B 3 ? 125 ? 20517198 2582 ? 2704 ? 23 145 2 2 2H0S A 1 ? 28 ? 2H0S -2 ? 26 ? -2 26 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2H0S C B 1 ? GB 20517198 ? ? insertion 21 1 1 2H0S C B 2 ? GB 20517198 ? ? insertion 22 2 1 2H0S A23 B 125 ? GB 20517198 A 2704 'modified residue' 145 3 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details 'The biological assembly is a monomer' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A U 13 "O3'" ? ? ? 1_555 A IU 14 P ? ? A U 11 A IU 12 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale2 covale both ? A IU 14 "O3'" ? ? ? 1_555 A A 15 P ? ? A IU 12 A A 13 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale3 covale both ? B A 124 "O3'" ? ? ? 1_555 B A23 125 P ? ? B A 144 B A23 145 1_555 ? ? ? ? ? ? ? 1.608 ? ? metalc1 metalc ? ? A C 4 OP2 ? ? ? 1_555 C MG . MG ? ? A C 2 B MG 301 1_555 ? ? ? ? ? ? ? 2.396 ? ? metalc2 metalc ? ? H HOH . O ? ? ? 1_555 C MG . MG ? ? A HOH 229 B MG 301 1_555 ? ? ? ? ? ? ? 2.021 ? ? metalc3 metalc ? ? B C 16 OP2 ? ? ? 1_555 C MG . MG ? ? B C 36 B MG 301 1_555 ? ? ? ? ? ? ? 2.185 ? ? metalc4 metalc ? ? B G 17 OP2 ? ? ? 1_555 C MG . MG ? ? B G 37 B MG 301 1_555 ? ? ? ? ? ? ? 2.369 ? ? metalc5 metalc ? ? B G 94 N7 ? ? ? 1_555 G MG . MG ? ? B G 114 B MG 305 1_555 ? ? ? ? ? ? ? 2.618 ? ? metalc6 metalc ? ? I HOH . O ? ? ? 1_555 G MG . MG ? ? B HOH 217 B MG 305 1_555 ? ? ? ? ? ? ? 2.488 ? ? metalc7 metalc ? ? I HOH . O ? ? ? 1_555 C MG . MG ? ? B HOH 220 B MG 301 1_555 ? ? ? ? ? ? ? 2.014 ? ? metalc8 metalc ? ? I HOH . O ? ? ? 1_555 C MG . MG ? ? B HOH 230 B MG 301 1_555 ? ? ? ? ? ? ? 2.433 ? ? metalc9 metalc ? ? I HOH . O ? ? ? 1_555 G MG . MG ? ? B HOH 234 B MG 305 1_555 ? ? ? ? ? ? ? 2.754 ? ? metalc10 metalc ? ? I HOH . O ? ? ? 1_555 G MG . MG ? ? B HOH 267 B MG 305 1_555 ? ? ? ? ? ? ? 2.636 ? ? hydrog1 hydrog ? ? A DA 2 N3 ? ? ? 1_555 B G 45 N2 ? ? A DA -1 B G 65 1_555 ? ? ? ? ? ? 'DA-G MISPAIR' ? ? ? hydrog2 hydrog ? ? A C 4 N3 ? ? ? 1_555 B G 44 N1 ? ? A C 2 B G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 4 N4 ? ? ? 1_555 B G 44 O6 ? ? A C 2 B G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 4 O2 ? ? ? 1_555 B G 44 N2 ? ? A C 2 B G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 5 N1 ? ? ? 1_555 B C 43 N3 ? ? A G 3 B C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 5 N2 ? ? ? 1_555 B C 43 O2 ? ? A G 3 B C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 5 O6 ? ? ? 1_555 B C 43 N4 ? ? A G 3 B C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 6 N3 ? ? ? 1_555 B G 42 N1 ? ? A C 4 B G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 6 N4 ? ? ? 1_555 B G 42 O6 ? ? A C 4 B G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 6 O2 ? ? ? 1_555 B G 42 N2 ? ? A C 4 B G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 7 N3 ? ? ? 1_555 B G 41 N1 ? ? A C 5 B G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 7 N4 ? ? ? 1_555 B G 41 O6 ? ? A C 5 B G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 7 O2 ? ? ? 1_555 B G 41 N2 ? ? A C 5 B G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 9 O6 ? ? ? 1_555 B G 14 N2 ? ? A G 7 B G 34 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog15 hydrog ? ? A G 9 N1 ? ? ? 1_555 B C 40 N3 ? ? A G 7 B C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 9 N2 ? ? ? 1_555 B C 40 O2 ? ? A G 7 B C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 9 O6 ? ? ? 1_555 B C 40 N4 ? ? A G 7 B C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 10 N1 ? ? ? 1_555 B U 13 O2 ? ? A G 8 B U 33 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog19 hydrog ? ? A G 10 O6 ? ? ? 1_555 B U 13 N3 ? ? A G 8 B U 33 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog20 hydrog ? ? A G 10 N2 ? ? ? 1_555 B A 38 N3 ? ? A G 8 B A 58 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog21 hydrog ? ? A A 11 N1 ? ? ? 1_555 B U 12 N3 ? ? A A 9 B U 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A A 11 N6 ? ? ? 1_555 B U 12 O4 ? ? A A 9 B U 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 12 N3 ? ? ? 1_555 B G 11 N1 ? ? A C 10 B G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 12 N4 ? ? ? 1_555 B G 11 O6 ? ? A C 10 B G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 12 O2 ? ? ? 1_555 B G 11 N2 ? ? A C 10 B G 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A U 13 N3 ? ? ? 1_555 B A 10 N1 ? ? A U 11 B A 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A U 13 O4 ? ? ? 1_555 B A 10 N6 ? ? A U 11 B A 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A U 13 O2 ? ? ? 1_555 B G 96 N2 ? ? A U 11 B G 116 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog29 hydrog ? ? A IU 14 N3 ? ? ? 1_555 B A 9 N1 ? ? A IU 12 B A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A IU 14 O4 ? ? ? 1_555 B A 9 N6 ? ? A IU 12 B A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A A 15 N1 ? ? ? 1_555 B U 8 N3 ? ? A A 13 B U 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A A 15 N6 ? ? ? 1_555 B U 8 O4 ? ? A A 13 B U 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A A 16 N1 ? ? ? 1_555 B U 7 N3 ? ? A A 14 B U 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A A 16 N6 ? ? ? 1_555 B U 7 O4 ? ? A A 14 B U 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A A 17 N1 ? ? ? 1_555 B U 6 N3 ? ? A A 15 B U 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A A 17 N6 ? ? ? 1_555 B U 6 O4 ? ? A A 15 B U 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 18 N1 ? ? ? 1_555 B C 5 N3 ? ? A G 16 B C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 18 N2 ? ? ? 1_555 B C 5 O2 ? ? A G 16 B C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 18 O6 ? ? ? 1_555 B C 5 N4 ? ? A G 16 B C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 19 N3 ? ? ? 1_555 B G 4 N1 ? ? A C 17 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 19 N4 ? ? ? 1_555 B G 4 O6 ? ? A C 17 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 19 O2 ? ? ? 1_555 B G 4 N2 ? ? A C 17 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 20 N3 ? ? ? 1_555 B G 3 N1 ? ? A C 18 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 20 N4 ? ? ? 1_555 B G 3 O6 ? ? A C 18 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 20 O2 ? ? ? 1_555 B G 3 N2 ? ? A C 18 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? B G 11 N2 ? ? ? 1_555 B A 97 N3 ? ? B G 31 B A 117 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog47 hydrog ? ? B A 15 N3 ? ? ? 1_555 B C 16 N4 ? ? B A 35 B C 36 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog48 hydrog ? ? B C 16 N3 ? ? ? 1_555 B G 33 N1 ? ? B C 36 B G 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? B C 16 N4 ? ? ? 1_555 B G 33 O6 ? ? B C 36 B G 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? B C 16 O2 ? ? ? 1_555 B G 33 N2 ? ? B C 36 B G 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? B G 17 N1 ? ? ? 1_555 B C 32 N3 ? ? B G 37 B C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? B G 17 N2 ? ? ? 1_555 B C 32 O2 ? ? B G 37 B C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? B G 17 O6 ? ? ? 1_555 B C 32 N4 ? ? B G 37 B C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? B G 17 N2 ? ? ? 1_555 B A 107 N1 ? ? B G 37 B A 127 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog55 hydrog ? ? B A 18 N1 ? ? ? 1_555 B U 31 N3 ? ? B A 38 B U 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? B A 18 N6 ? ? ? 1_555 B U 31 O4 ? ? B A 38 B U 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? B A 18 N3 ? ? ? 1_555 B G 108 N2 ? ? B A 38 B G 128 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog58 hydrog ? ? B C 22 N3 ? ? ? 1_555 B G 53 N1 ? ? B C 42 B G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? B C 22 N4 ? ? ? 1_555 B G 53 O6 ? ? B C 42 B G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? B C 22 O2 ? ? ? 1_555 B G 53 N2 ? ? B C 42 B G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? B A 23 N1 ? ? ? 1_555 B U 52 N3 ? ? B A 43 B U 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? B A 23 N6 ? ? ? 1_555 B U 52 O4 ? ? B A 43 B U 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? B G 24 N1 ? ? ? 1_555 B C 51 N3 ? ? B G 44 B C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? B G 24 N2 ? ? ? 1_555 B C 51 O2 ? ? B G 44 B C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? B G 24 O6 ? ? ? 1_555 B C 51 N4 ? ? B G 44 B C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? B G 25 N1 ? ? ? 1_555 B C 50 N3 ? ? B G 45 B C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? B G 25 N2 ? ? ? 1_555 B C 50 O2 ? ? B G 45 B C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? B G 25 O6 ? ? ? 1_555 B C 50 N4 ? ? B G 45 B C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? B G 26 N1 ? ? ? 1_555 B C 49 N3 ? ? B G 46 B C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? B G 26 N2 ? ? ? 1_555 B C 49 O2 ? ? B G 46 B C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? B G 26 O6 ? ? ? 1_555 B C 49 N4 ? ? B G 46 B C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? B U 27 N3 ? ? ? 1_555 B G 48 O6 ? ? B U 47 B G 68 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog73 hydrog ? ? B U 27 O2 ? ? ? 1_555 B G 48 N1 ? ? B U 47 B G 68 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog74 hydrog ? ? B U 28 N3 ? ? ? 1_555 B A 30 N7 ? ? B U 48 B A 50 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog75 hydrog ? ? B U 28 O4 ? ? ? 1_555 B A 30 N6 ? ? B U 48 B A 50 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog76 hydrog ? ? B G 33 N2 ? ? ? 1_555 B A 84 N1 ? ? B G 53 B A 104 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog77 hydrog ? ? B A 34 N1 ? ? ? 1_555 B U 39 N3 ? ? B A 54 B U 59 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog78 hydrog ? ? B A 34 N6 ? ? ? 1_555 B U 39 O2 ? ? B A 54 B U 59 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog79 hydrog ? ? B C 54 N3 ? ? ? 1_555 B G 70 N1 ? ? B C 74 B G 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? B C 54 N4 ? ? ? 1_555 B G 70 O6 ? ? B C 74 B G 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? B C 54 O2 ? ? ? 1_555 B G 70 N2 ? ? B C 74 B G 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? B G 55 N1 ? ? ? 1_555 B C 69 N3 ? ? B G 75 B C 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? B G 55 N2 ? ? ? 1_555 B C 69 O2 ? ? B G 75 B C 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? B G 55 O6 ? ? ? 1_555 B C 69 N4 ? ? B G 75 B C 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? B G 55 N2 ? ? ? 1_555 B A 73 N3 ? ? B G 75 B A 93 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog86 hydrog ? ? B G 56 N1 ? ? ? 1_555 B C 68 N3 ? ? B G 76 B C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? B G 56 N2 ? ? ? 1_555 B C 68 O2 ? ? B G 76 B C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? B G 56 O6 ? ? ? 1_555 B C 68 N4 ? ? B G 76 B C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? B U 57 N3 ? ? ? 1_555 B A 67 N1 ? ? B U 77 B A 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? B U 57 O4 ? ? ? 1_555 B A 67 N6 ? ? B U 77 B A 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? B C 58 N3 ? ? ? 1_555 B G 66 N1 ? ? B C 78 B G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? B C 58 N4 ? ? ? 1_555 B G 66 O6 ? ? B C 78 B G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? B C 58 O2 ? ? ? 1_555 B G 66 N2 ? ? B C 78 B G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? B U 59 O2 ? ? ? 1_555 B C 61 N4 ? ? B U 79 B C 81 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog95 hydrog ? ? B U 60 N3 ? ? ? 1_555 B A 124 N1 ? ? B U 80 B A 144 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? B U 60 O4 ? ? ? 1_555 B A 124 N6 ? ? B U 80 B A 144 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? B C 61 N3 ? ? ? 1_555 B G 123 N1 ? ? B C 81 B G 143 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? B C 61 N4 ? ? ? 1_555 B G 123 O6 ? ? B C 81 B G 143 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? B C 61 O2 ? ? ? 1_555 B G 123 N2 ? ? B C 81 B G 143 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? B C 62 N3 ? ? ? 1_555 B G 122 N1 ? ? B C 82 B G 142 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? B C 62 N4 ? ? ? 1_555 B G 122 O6 ? ? B C 82 B G 142 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? B C 62 O2 ? ? ? 1_555 B G 122 N2 ? ? B C 82 B G 142 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? B U 63 N3 ? ? ? 1_555 B A 121 N1 ? ? B U 83 B A 141 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? B U 63 O4 ? ? ? 1_555 B A 121 N6 ? ? B U 83 B A 141 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? B G 64 N1 ? ? ? 1_555 B C 120 N3 ? ? B G 84 B C 140 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? B G 64 N2 ? ? ? 1_555 B C 120 O2 ? ? B G 84 B C 140 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? B G 64 O6 ? ? ? 1_555 B C 120 N4 ? ? B G 84 B C 140 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? B C 65 N3 ? ? ? 1_555 B G 119 N1 ? ? B C 85 B G 139 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? B C 65 N4 ? ? ? 1_555 B G 119 O6 ? ? B C 85 B G 139 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? B C 65 O2 ? ? ? 1_555 B G 119 N2 ? ? B C 85 B G 139 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? B G 70 N2 ? ? ? 1_555 B U 71 O4 ? ? B G 90 B U 91 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog112 hydrog ? ? B A 75 N6 ? ? ? 1_555 B G 117 N3 ? ? B A 95 B G 137 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog113 hydrog ? ? B A 75 N7 ? ? ? 1_555 B G 117 N2 ? ? B A 95 B G 137 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog114 hydrog ? ? B G 76 N1 ? ? ? 1_555 B C 116 N3 ? ? B G 96 B C 136 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog115 hydrog ? ? B G 77 N1 ? ? ? 1_555 B C 115 N3 ? ? B G 97 B C 135 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog116 hydrog ? ? B G 77 N2 ? ? ? 1_555 B C 115 O2 ? ? B G 97 B C 135 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog117 hydrog ? ? B G 77 O6 ? ? ? 1_555 B C 115 N4 ? ? B G 97 B C 135 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog118 hydrog ? ? B A 78 N1 ? ? ? 1_555 B U 114 N3 ? ? B A 98 B U 134 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog119 hydrog ? ? B C 79 N3 ? ? ? 1_555 B G 113 N1 ? ? B C 99 B G 133 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog120 hydrog ? ? B C 79 N4 ? ? ? 1_555 B G 113 O6 ? ? B C 99 B G 133 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog121 hydrog ? ? B C 79 O2 ? ? ? 1_555 B G 113 N2 ? ? B C 99 B G 133 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog122 hydrog ? ? B U 80 N3 ? ? ? 1_555 B A 112 N1 ? ? B U 100 B A 132 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog123 hydrog ? ? B U 80 O4 ? ? ? 1_555 B A 112 N6 ? ? B U 100 B A 132 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog124 hydrog ? ? B G 81 N1 ? ? ? 1_555 B C 111 N3 ? ? B G 101 B C 131 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog125 hydrog ? ? B G 81 N2 ? ? ? 1_555 B C 111 O2 ? ? B G 101 B C 131 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog126 hydrog ? ? B G 81 O6 ? ? ? 1_555 B C 111 N4 ? ? B G 101 B C 131 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog127 hydrog ? ? B G 82 N2 ? ? ? 1_555 B A 109 N7 ? ? B G 102 B A 129 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog128 hydrog ? ? B A 85 N6 ? ? ? 1_555 B U 106 O2 ? ? B A 105 B U 126 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog129 hydrog ? ? B A 85 N7 ? ? ? 1_555 B U 106 N3 ? ? B A 105 B U 126 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog130 hydrog ? ? B A 86 N6 ? ? ? 1_555 B A 105 N1 ? ? B A 106 B A 125 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog131 hydrog ? ? B A 86 N7 ? ? ? 1_555 B A 105 N6 ? ? B A 106 B A 125 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog132 hydrog ? ? B A 87 N6 ? ? ? 1_555 B C 104 O2 ? ? B A 107 B C 124 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog133 hydrog ? ? B C 88 N3 ? ? ? 1_555 B G 103 N1 ? ? B C 108 B G 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog134 hydrog ? ? B C 88 N4 ? ? ? 1_555 B G 103 O6 ? ? B C 108 B G 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog135 hydrog ? ? B C 88 O2 ? ? ? 1_555 B G 103 N2 ? ? B C 108 B G 123 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog136 hydrog ? ? B C 89 N3 ? ? ? 1_555 B G 102 N1 ? ? B C 109 B G 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog137 hydrog ? ? B C 89 N4 ? ? ? 1_555 B G 102 O6 ? ? B C 109 B G 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog138 hydrog ? ? B C 89 O2 ? ? ? 1_555 B G 102 N2 ? ? B C 109 B G 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog139 hydrog ? ? B A 90 N1 ? ? ? 1_555 B U 101 N3 ? ? B A 110 B U 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog140 hydrog ? ? B A 90 N6 ? ? ? 1_555 B U 101 O4 ? ? B A 110 B U 121 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog141 hydrog ? ? B C 91 N3 ? ? ? 1_555 B G 100 N1 ? ? B C 111 B G 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog142 hydrog ? ? B C 91 N4 ? ? ? 1_555 B G 100 O6 ? ? B C 111 B G 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog143 hydrog ? ? B C 91 O2 ? ? ? 1_555 B G 100 N2 ? ? B C 111 B G 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog144 hydrog ? ? B A 92 N1 ? ? ? 1_555 B U 99 N3 ? ? B A 112 B U 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog145 hydrog ? ? B A 92 N6 ? ? ? 1_555 B U 99 O4 ? ? B A 112 B U 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog146 hydrog ? ? B G 93 N1 ? ? ? 1_555 B C 98 N3 ? ? B G 113 B C 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog147 hydrog ? ? B G 93 N2 ? ? ? 1_555 B C 98 O2 ? ? B G 113 B C 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog148 hydrog ? ? B G 93 O6 ? ? ? 1_555 B C 98 N4 ? ? B G 113 B C 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog149 hydrog ? ? B G 94 N2 ? ? ? 1_555 B A 97 N7 ? ? B G 114 B A 117 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog150 hydrog ? ? B A 124 N6 ? ? ? 1_555 B A23 125 N1 ? ? B A 144 B A23 145 1_555 ? ? ? ? ? ? 'A-A23 MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? A C 4 ? A C 2 ? 1_555 MG ? C MG . ? B MG 301 ? 1_555 O ? H HOH . ? A HOH 229 ? 1_555 85.1 ? 2 OP2 ? A C 4 ? A C 2 ? 1_555 MG ? C MG . ? B MG 301 ? 1_555 OP2 ? B C 16 ? B C 36 ? 1_555 173.7 ? 3 O ? H HOH . ? A HOH 229 ? 1_555 MG ? C MG . ? B MG 301 ? 1_555 OP2 ? B C 16 ? B C 36 ? 1_555 96.7 ? 4 OP2 ? A C 4 ? A C 2 ? 1_555 MG ? C MG . ? B MG 301 ? 1_555 OP2 ? B G 17 ? B G 37 ? 1_555 81.8 ? 5 O ? H HOH . ? A HOH 229 ? 1_555 MG ? C MG . ? B MG 301 ? 1_555 OP2 ? B G 17 ? B G 37 ? 1_555 102.1 ? 6 OP2 ? B C 16 ? B C 36 ? 1_555 MG ? C MG . ? B MG 301 ? 1_555 OP2 ? B G 17 ? B G 37 ? 1_555 92.0 ? 7 OP2 ? A C 4 ? A C 2 ? 1_555 MG ? C MG . ? B MG 301 ? 1_555 O ? I HOH . ? B HOH 220 ? 1_555 92.3 ? 8 O ? H HOH . ? A HOH 229 ? 1_555 MG ? C MG . ? B MG 301 ? 1_555 O ? I HOH . ? B HOH 220 ? 1_555 177.1 ? 9 OP2 ? B C 16 ? B C 36 ? 1_555 MG ? C MG . ? B MG 301 ? 1_555 O ? I HOH . ? B HOH 220 ? 1_555 85.9 ? 10 OP2 ? B G 17 ? B G 37 ? 1_555 MG ? C MG . ? B MG 301 ? 1_555 O ? I HOH . ? B HOH 220 ? 1_555 78.9 ? 11 OP2 ? A C 4 ? A C 2 ? 1_555 MG ? C MG . ? B MG 301 ? 1_555 O ? I HOH . ? B HOH 230 ? 1_555 103.3 ? 12 O ? H HOH . ? A HOH 229 ? 1_555 MG ? C MG . ? B MG 301 ? 1_555 O ? I HOH . ? B HOH 230 ? 1_555 91.8 ? 13 OP2 ? B C 16 ? B C 36 ? 1_555 MG ? C MG . ? B MG 301 ? 1_555 O ? I HOH . ? B HOH 230 ? 1_555 82.7 ? 14 OP2 ? B G 17 ? B G 37 ? 1_555 MG ? C MG . ? B MG 301 ? 1_555 O ? I HOH . ? B HOH 230 ? 1_555 165.7 ? 15 O ? I HOH . ? B HOH 220 ? 1_555 MG ? C MG . ? B MG 301 ? 1_555 O ? I HOH . ? B HOH 230 ? 1_555 87.4 ? 16 N7 ? B G 94 ? B G 114 ? 1_555 MG ? G MG . ? B MG 305 ? 1_555 O ? I HOH . ? B HOH 217 ? 1_555 79.6 ? 17 N7 ? B G 94 ? B G 114 ? 1_555 MG ? G MG . ? B MG 305 ? 1_555 O ? I HOH . ? B HOH 234 ? 1_555 108.6 ? 18 O ? I HOH . ? B HOH 217 ? 1_555 MG ? G MG . ? B MG 305 ? 1_555 O ? I HOH . ? B HOH 234 ? 1_555 171.8 ? 19 N7 ? B G 94 ? B G 114 ? 1_555 MG ? G MG . ? B MG 305 ? 1_555 O ? I HOH . ? B HOH 267 ? 1_555 141.9 ? 20 O ? I HOH . ? B HOH 217 ? 1_555 MG ? G MG . ? B MG 305 ? 1_555 O ? I HOH . ? B HOH 267 ? 1_555 62.6 ? 21 O ? I HOH . ? B HOH 234 ? 1_555 MG ? G MG . ? B MG 305 ? 1_555 O ? I HOH . ? B HOH 267 ? 1_555 109.2 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B MG 301 ? 8 'BINDING SITE FOR RESIDUE MG B 301' AC2 Software B MG 302 ? 3 'BINDING SITE FOR RESIDUE MG B 302' AC3 Software B MG 303 ? 4 'BINDING SITE FOR RESIDUE MG B 303' AC4 Software B MG 304 ? 1 'BINDING SITE FOR RESIDUE MG B 304' AC5 Software B MG 305 ? 4 'BINDING SITE FOR RESIDUE MG B 305' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 G A 3 ? G A 1 . ? 1_555 ? 2 AC1 8 C A 4 ? C A 2 . ? 1_555 ? 3 AC1 8 HOH H . ? HOH A 229 . ? 1_555 ? 4 AC1 8 A B 15 ? A B 35 . ? 1_555 ? 5 AC1 8 C B 16 ? C B 36 . ? 1_555 ? 6 AC1 8 G B 17 ? G B 37 . ? 1_555 ? 7 AC1 8 HOH I . ? HOH B 220 . ? 1_555 ? 8 AC1 8 HOH I . ? HOH B 230 . ? 1_555 ? 9 AC2 3 U B 59 ? U B 79 . ? 1_555 ? 10 AC2 3 C B 61 ? C B 81 . ? 1_555 ? 11 AC2 3 C B 62 ? C B 82 . ? 1_555 ? 12 AC3 4 A B 36 ? A B 56 . ? 1_555 ? 13 AC3 4 C B 37 ? C B 57 . ? 1_555 ? 14 AC3 4 U B 39 ? U B 59 . ? 1_555 ? 15 AC3 4 HOH I . ? HOH B 242 . ? 1_555 ? 16 AC4 1 A B 87 ? A B 107 . ? 1_555 ? 17 AC5 4 G B 94 ? G B 114 . ? 1_555 ? 18 AC5 4 HOH I . ? HOH B 217 . ? 1_555 ? 19 AC5 4 HOH I . ? HOH B 234 . ? 1_555 ? 20 AC5 4 HOH I . ? HOH B 267 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N9 B G 41 ? ? "C1'" B G 41 ? ? "C2'" B G 41 ? ? 121.95 114.00 7.95 1.30 N 2 1 N1 B U 48 ? ? "C1'" B U 48 ? ? "C2'" B U 48 ? ? 122.20 114.00 8.20 1.30 N 3 1 "C2'" B C 57 ? ? "C3'" B C 57 ? ? "O3'" B C 57 ? ? 126.75 113.70 13.05 1.60 N 4 1 N9 B A 58 ? ? "C1'" B A 58 ? ? "C2'" B A 58 ? ? 122.42 114.00 8.42 1.30 N 5 1 "C2'" B U 103 ? ? "C3'" B U 103 ? ? "O3'" B U 103 ? ? 128.08 113.70 14.38 1.60 N 6 1 N9 B G 130 ? ? "C1'" B G 130 ? ? "C2'" B G 130 ? ? 123.22 114.00 9.22 1.30 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 G B 55 ? ? 0.054 'SIDE CHAIN' 2 1 G B 114 ? ? 0.057 'SIDE CHAIN' # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A IU 14 A IU 12 ? U "5-IODOURIDINE-5'-MONOPHOSPHATE" 2 B A23 125 B A23 145 ? A ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A U 21 ? A U 23 2 1 Y 1 A G 22 ? A G 24 3 1 Y 1 A C 23 ? A C 25 4 1 Y 1 A A 24 ? A A 26 5 1 Y 1 A C 25 ? A C 27 6 1 Y 1 A U 26 ? A U 28 7 1 Y 1 B C 21 ? B C 1 8 1 Y 1 B C 22 ? B C 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 A23 PC P N S 38 A23 O1C O N N 39 A23 O2C O N N 40 A23 P P N N 41 A23 OP1 O N N 42 A23 OP2 O N N 43 A23 OP3 O N N 44 A23 "O5'" O N N 45 A23 "C5'" C N N 46 A23 "C4'" C N R 47 A23 "O4'" O N N 48 A23 "C3'" C N R 49 A23 "O3'" O N N 50 A23 "C2'" C N R 51 A23 "O2'" O N N 52 A23 "C1'" C N R 53 A23 N9 N Y N 54 A23 C8 C Y N 55 A23 N7 N Y N 56 A23 C5 C Y N 57 A23 C6 C Y N 58 A23 N6 N N N 59 A23 N1 N Y N 60 A23 C2 C Y N 61 A23 N3 N Y N 62 A23 C4 C Y N 63 A23 HOC2 H N N 64 A23 HOP2 H N N 65 A23 HOP3 H N N 66 A23 "H5'" H N N 67 A23 "H5''" H N N 68 A23 "H4'" H N N 69 A23 "H3'" H N N 70 A23 "H2'" H N N 71 A23 "H1'" H N N 72 A23 H8 H N N 73 A23 HN61 H N N 74 A23 HN62 H N N 75 A23 H2 H N N 76 C OP3 O N N 77 C P P N N 78 C OP1 O N N 79 C OP2 O N N 80 C "O5'" O N N 81 C "C5'" C N N 82 C "C4'" C N R 83 C "O4'" O N N 84 C "C3'" C N S 85 C "O3'" O N N 86 C "C2'" C N R 87 C "O2'" O N N 88 C "C1'" C N R 89 C N1 N N N 90 C C2 C N N 91 C O2 O N N 92 C N3 N N N 93 C C4 C N N 94 C N4 N N N 95 C C5 C N N 96 C C6 C N N 97 C HOP3 H N N 98 C HOP2 H N N 99 C "H5'" H N N 100 C "H5''" H N N 101 C "H4'" H N N 102 C "H3'" H N N 103 C "HO3'" H N N 104 C "H2'" H N N 105 C "HO2'" H N N 106 C "H1'" H N N 107 C H41 H N N 108 C H42 H N N 109 C H5 H N N 110 C H6 H N N 111 DA OP3 O N N 112 DA P P N N 113 DA OP1 O N N 114 DA OP2 O N N 115 DA "O5'" O N N 116 DA "C5'" C N N 117 DA "C4'" C N R 118 DA "O4'" O N N 119 DA "C3'" C N S 120 DA "O3'" O N N 121 DA "C2'" C N N 122 DA "C1'" C N R 123 DA N9 N Y N 124 DA C8 C Y N 125 DA N7 N Y N 126 DA C5 C Y N 127 DA C6 C Y N 128 DA N6 N N N 129 DA N1 N Y N 130 DA C2 C Y N 131 DA N3 N Y N 132 DA C4 C Y N 133 DA HOP3 H N N 134 DA HOP2 H N N 135 DA "H5'" H N N 136 DA "H5''" H N N 137 DA "H4'" H N N 138 DA "H3'" H N N 139 DA "HO3'" H N N 140 DA "H2'" H N N 141 DA "H2''" H N N 142 DA "H1'" H N N 143 DA H8 H N N 144 DA H61 H N N 145 DA H62 H N N 146 DA H2 H N N 147 G OP3 O N N 148 G P P N N 149 G OP1 O N N 150 G OP2 O N N 151 G "O5'" O N N 152 G "C5'" C N N 153 G "C4'" C N R 154 G "O4'" O N N 155 G "C3'" C N S 156 G "O3'" O N N 157 G "C2'" C N R 158 G "O2'" O N N 159 G "C1'" C N R 160 G N9 N Y N 161 G C8 C Y N 162 G N7 N Y N 163 G C5 C Y N 164 G C6 C N N 165 G O6 O N N 166 G N1 N N N 167 G C2 C N N 168 G N2 N N N 169 G N3 N N N 170 G C4 C Y N 171 G HOP3 H N N 172 G HOP2 H N N 173 G "H5'" H N N 174 G "H5''" H N N 175 G "H4'" H N N 176 G "H3'" H N N 177 G "HO3'" H N N 178 G "H2'" H N N 179 G "HO2'" H N N 180 G "H1'" H N N 181 G H8 H N N 182 G H1 H N N 183 G H21 H N N 184 G H22 H N N 185 HOH O O N N 186 HOH H1 H N N 187 HOH H2 H N N 188 IU P P N N 189 IU OP1 O N N 190 IU OP2 O N N 191 IU OP3 O N N 192 IU "O5'" O N N 193 IU "C5'" C N N 194 IU "C4'" C N R 195 IU "O4'" O N N 196 IU "C3'" C N S 197 IU "O3'" O N N 198 IU "C2'" C N R 199 IU "O2'" O N N 200 IU "C1'" C N R 201 IU N1 N N N 202 IU C2 C N N 203 IU O2 O N N 204 IU N3 N N N 205 IU C4 C N N 206 IU O4 O N N 207 IU C5 C N N 208 IU C6 C N N 209 IU I5 I N N 210 IU HOP2 H N N 211 IU HOP3 H N N 212 IU "H5'" H N N 213 IU "H5''" H N N 214 IU "H4'" H N N 215 IU "H3'" H N N 216 IU "HO3'" H N N 217 IU "H2'" H N N 218 IU "HO2'" H N N 219 IU "H1'" H N N 220 IU H3 H N N 221 IU H6 H N N 222 MG MG MG N N 223 U OP3 O N N 224 U P P N N 225 U OP1 O N N 226 U OP2 O N N 227 U "O5'" O N N 228 U "C5'" C N N 229 U "C4'" C N R 230 U "O4'" O N N 231 U "C3'" C N S 232 U "O3'" O N N 233 U "C2'" C N R 234 U "O2'" O N N 235 U "C1'" C N R 236 U N1 N N N 237 U C2 C N N 238 U O2 O N N 239 U N3 N N N 240 U C4 C N N 241 U O4 O N N 242 U C5 C N N 243 U C6 C N N 244 U HOP3 H N N 245 U HOP2 H N N 246 U "H5'" H N N 247 U "H5''" H N N 248 U "H4'" H N N 249 U "H3'" H N N 250 U "HO3'" H N N 251 U "H2'" H N N 252 U "HO2'" H N N 253 U "H1'" H N N 254 U H3 H N N 255 U H5 H N N 256 U H6 H N N 257 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 A23 PC O1C doub N N 40 A23 PC O2C sing N N 41 A23 PC "O3'" sing N N 42 A23 PC "O2'" sing N N 43 A23 O2C HOC2 sing N N 44 A23 P OP1 doub N N 45 A23 P OP2 sing N N 46 A23 P OP3 sing N N 47 A23 P "O5'" sing N N 48 A23 OP2 HOP2 sing N N 49 A23 OP3 HOP3 sing N N 50 A23 "O5'" "C5'" sing N N 51 A23 "C5'" "C4'" sing N N 52 A23 "C5'" "H5'" sing N N 53 A23 "C5'" "H5''" sing N N 54 A23 "C4'" "O4'" sing N N 55 A23 "C4'" "C3'" sing N N 56 A23 "C4'" "H4'" sing N N 57 A23 "O4'" "C1'" sing N N 58 A23 "C3'" "O3'" sing N N 59 A23 "C3'" "C2'" sing N N 60 A23 "C3'" "H3'" sing N N 61 A23 "C2'" "O2'" sing N N 62 A23 "C2'" "C1'" sing N N 63 A23 "C2'" "H2'" sing N N 64 A23 "C1'" N9 sing N N 65 A23 "C1'" "H1'" sing N N 66 A23 N9 C8 sing Y N 67 A23 N9 C4 sing Y N 68 A23 C8 N7 doub Y N 69 A23 C8 H8 sing N N 70 A23 N7 C5 sing Y N 71 A23 C5 C6 sing Y N 72 A23 C5 C4 doub Y N 73 A23 C6 N6 sing N N 74 A23 C6 N1 doub Y N 75 A23 N6 HN61 sing N N 76 A23 N6 HN62 sing N N 77 A23 N1 C2 sing Y N 78 A23 C2 N3 doub Y N 79 A23 C2 H2 sing N N 80 A23 N3 C4 sing Y N 81 C OP3 P sing N N 82 C OP3 HOP3 sing N N 83 C P OP1 doub N N 84 C P OP2 sing N N 85 C P "O5'" sing N N 86 C OP2 HOP2 sing N N 87 C "O5'" "C5'" sing N N 88 C "C5'" "C4'" sing N N 89 C "C5'" "H5'" sing N N 90 C "C5'" "H5''" sing N N 91 C "C4'" "O4'" sing N N 92 C "C4'" "C3'" sing N N 93 C "C4'" "H4'" sing N N 94 C "O4'" "C1'" sing N N 95 C "C3'" "O3'" sing N N 96 C "C3'" "C2'" sing N N 97 C "C3'" "H3'" sing N N 98 C "O3'" "HO3'" sing N N 99 C "C2'" "O2'" sing N N 100 C "C2'" "C1'" sing N N 101 C "C2'" "H2'" sing N N 102 C "O2'" "HO2'" sing N N 103 C "C1'" N1 sing N N 104 C "C1'" "H1'" sing N N 105 C N1 C2 sing N N 106 C N1 C6 sing N N 107 C C2 O2 doub N N 108 C C2 N3 sing N N 109 C N3 C4 doub N N 110 C C4 N4 sing N N 111 C C4 C5 sing N N 112 C N4 H41 sing N N 113 C N4 H42 sing N N 114 C C5 C6 doub N N 115 C C5 H5 sing N N 116 C C6 H6 sing N N 117 DA OP3 P sing N N 118 DA OP3 HOP3 sing N N 119 DA P OP1 doub N N 120 DA P OP2 sing N N 121 DA P "O5'" sing N N 122 DA OP2 HOP2 sing N N 123 DA "O5'" "C5'" sing N N 124 DA "C5'" "C4'" sing N N 125 DA "C5'" "H5'" sing N N 126 DA "C5'" "H5''" sing N N 127 DA "C4'" "O4'" sing N N 128 DA "C4'" "C3'" sing N N 129 DA "C4'" "H4'" sing N N 130 DA "O4'" "C1'" sing N N 131 DA "C3'" "O3'" sing N N 132 DA "C3'" "C2'" sing N N 133 DA "C3'" "H3'" sing N N 134 DA "O3'" "HO3'" sing N N 135 DA "C2'" "C1'" sing N N 136 DA "C2'" "H2'" sing N N 137 DA "C2'" "H2''" sing N N 138 DA "C1'" N9 sing N N 139 DA "C1'" "H1'" sing N N 140 DA N9 C8 sing Y N 141 DA N9 C4 sing Y N 142 DA C8 N7 doub Y N 143 DA C8 H8 sing N N 144 DA N7 C5 sing Y N 145 DA C5 C6 sing Y N 146 DA C5 C4 doub Y N 147 DA C6 N6 sing N N 148 DA C6 N1 doub Y N 149 DA N6 H61 sing N N 150 DA N6 H62 sing N N 151 DA N1 C2 sing Y N 152 DA C2 N3 doub Y N 153 DA C2 H2 sing N N 154 DA N3 C4 sing Y N 155 G OP3 P sing N N 156 G OP3 HOP3 sing N N 157 G P OP1 doub N N 158 G P OP2 sing N N 159 G P "O5'" sing N N 160 G OP2 HOP2 sing N N 161 G "O5'" "C5'" sing N N 162 G "C5'" "C4'" sing N N 163 G "C5'" "H5'" sing N N 164 G "C5'" "H5''" sing N N 165 G "C4'" "O4'" sing N N 166 G "C4'" "C3'" sing N N 167 G "C4'" "H4'" sing N N 168 G "O4'" "C1'" sing N N 169 G "C3'" "O3'" sing N N 170 G "C3'" "C2'" sing N N 171 G "C3'" "H3'" sing N N 172 G "O3'" "HO3'" sing N N 173 G "C2'" "O2'" sing N N 174 G "C2'" "C1'" sing N N 175 G "C2'" "H2'" sing N N 176 G "O2'" "HO2'" sing N N 177 G "C1'" N9 sing N N 178 G "C1'" "H1'" sing N N 179 G N9 C8 sing Y N 180 G N9 C4 sing Y N 181 G C8 N7 doub Y N 182 G C8 H8 sing N N 183 G N7 C5 sing Y N 184 G C5 C6 sing N N 185 G C5 C4 doub Y N 186 G C6 O6 doub N N 187 G C6 N1 sing N N 188 G N1 C2 sing N N 189 G N1 H1 sing N N 190 G C2 N2 sing N N 191 G C2 N3 doub N N 192 G N2 H21 sing N N 193 G N2 H22 sing N N 194 G N3 C4 sing N N 195 HOH O H1 sing N N 196 HOH O H2 sing N N 197 IU P OP1 doub N N 198 IU P OP2 sing N N 199 IU P OP3 sing N N 200 IU P "O5'" sing N N 201 IU OP2 HOP2 sing N N 202 IU OP3 HOP3 sing N N 203 IU "O5'" "C5'" sing N N 204 IU "C5'" "C4'" sing N N 205 IU "C5'" "H5'" sing N N 206 IU "C5'" "H5''" sing N N 207 IU "C4'" "O4'" sing N N 208 IU "C4'" "C3'" sing N N 209 IU "C4'" "H4'" sing N N 210 IU "O4'" "C1'" sing N N 211 IU "C3'" "O3'" sing N N 212 IU "C3'" "C2'" sing N N 213 IU "C3'" "H3'" sing N N 214 IU "O3'" "HO3'" sing N N 215 IU "C2'" "O2'" sing N N 216 IU "C2'" "C1'" sing N N 217 IU "C2'" "H2'" sing N N 218 IU "O2'" "HO2'" sing N N 219 IU "C1'" N1 sing N N 220 IU "C1'" "H1'" sing N N 221 IU N1 C2 sing N N 222 IU N1 C6 sing N N 223 IU C2 O2 doub N N 224 IU C2 N3 sing N N 225 IU N3 C4 sing N N 226 IU N3 H3 sing N N 227 IU C4 O4 doub N N 228 IU C4 C5 sing N N 229 IU C5 C6 doub N N 230 IU C5 I5 sing N N 231 IU C6 H6 sing N N 232 U OP3 P sing N N 233 U OP3 HOP3 sing N N 234 U P OP1 doub N N 235 U P OP2 sing N N 236 U P "O5'" sing N N 237 U OP2 HOP2 sing N N 238 U "O5'" "C5'" sing N N 239 U "C5'" "C4'" sing N N 240 U "C5'" "H5'" sing N N 241 U "C5'" "H5''" sing N N 242 U "C4'" "O4'" sing N N 243 U "C4'" "C3'" sing N N 244 U "C4'" "H4'" sing N N 245 U "O4'" "C1'" sing N N 246 U "C3'" "O3'" sing N N 247 U "C3'" "C2'" sing N N 248 U "C3'" "H3'" sing N N 249 U "O3'" "HO3'" sing N N 250 U "C2'" "O2'" sing N N 251 U "C2'" "C1'" sing N N 252 U "C2'" "H2'" sing N N 253 U "O2'" "HO2'" sing N N 254 U "C1'" N1 sing N N 255 U "C1'" "H1'" sing N N 256 U N1 C2 sing N N 257 U N1 C6 sing N N 258 U C2 O2 doub N N 259 U C2 N3 sing N N 260 U N3 C4 sing N N 261 U N3 H3 sing N N 262 U C4 O4 doub N N 263 U C4 C5 sing N N 264 U C5 C6 doub N N 265 U C5 H5 sing N N 266 U C6 H6 sing N N 267 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2H0S 'double helix' 2H0S 'a-form double helix' 2H0S 'mismatched base pair' 2H0S 'triple helix' 2H0S 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B G 3 1_555 A C 20 1_555 -0.026 0.033 0.083 0.358 -1.296 3.860 1 B_G23:C18_A B 23 ? A 18 ? 19 1 1 B G 4 1_555 A C 19 1_555 -0.737 0.051 0.092 -1.042 -15.996 6.349 2 B_G24:C17_A B 24 ? A 17 ? 19 1 1 B C 5 1_555 A G 18 1_555 0.030 -0.098 0.303 -3.546 -10.442 5.095 3 B_C25:G16_A B 25 ? A 16 ? 19 1 1 B U 6 1_555 A A 17 1_555 -0.115 -0.209 0.366 -3.222 -9.045 -0.212 4 B_U26:A15_A B 26 ? A 15 ? 20 1 1 B U 7 1_555 A A 16 1_555 0.044 -0.138 0.273 -4.007 -11.585 3.993 5 B_U27:A14_A B 27 ? A 14 ? 20 1 1 B U 8 1_555 A A 15 1_555 0.151 -0.230 -0.131 2.738 -16.852 1.818 6 B_U28:A13_A B 28 ? A 13 ? 20 1 1 B A 9 1_555 A IU 14 1_555 -0.250 -0.018 0.099 -1.353 -14.175 5.145 7 B_A29:IU12_A B 29 ? A 12 ? 20 1 1 B A 10 1_555 A U 13 1_555 0.166 -0.043 0.203 5.182 -10.250 1.820 8 B_A30:U11_A B 30 ? A 11 ? 20 1 1 B G 11 1_555 A C 12 1_555 -0.122 -0.231 -0.021 -4.637 -17.504 5.193 9 B_G31:C10_A B 31 ? A 10 ? 19 1 1 B U 12 1_555 A A 11 1_555 0.072 -0.117 0.120 -14.574 -17.098 -0.475 10 B_U32:A9_A B 32 ? A 9 ? 20 1 1 B U 13 1_555 A G 10 1_555 2.281 -0.203 0.312 -23.103 -5.570 -16.531 11 B_U33:G8_A B 33 ? A 8 ? 28 ? 1 B C 40 1_555 A G 9 1_555 0.274 -0.062 -0.273 6.904 -5.167 3.756 12 B_C60:G7_A B 60 ? A 7 ? 19 1 1 B G 41 1_555 A C 7 1_555 -0.177 -0.021 0.044 -0.648 3.061 3.054 13 B_G61:C5_A B 61 ? A 5 ? 19 1 1 B G 42 1_555 A C 6 1_555 -0.512 -0.243 -0.133 -4.101 -10.763 2.312 14 B_G62:C4_A B 62 ? A 4 ? 19 1 1 B C 43 1_555 A G 5 1_555 0.333 -0.157 -0.110 -0.641 -7.057 0.889 15 B_C63:G3_A B 63 ? A 3 ? 19 1 1 B G 44 1_555 A C 4 1_555 -0.021 0.043 0.053 -4.114 -0.896 3.108 16 B_G64:C2_A B 64 ? A 2 ? 19 1 1 B G 45 1_555 A DA 2 1_555 -2.856 -7.358 1.302 -41.168 -3.674 -154.131 17 B_G65:DA-1_A B 65 ? A -1 ? ? 6 1 B U 28 1_555 B A 30 1_555 -0.343 3.474 -0.615 6.699 -8.697 -62.528 18 B_U48:A50_B B 48 ? B 50 ? 23 3 1 B G 48 1_555 B U 27 1_555 -2.351 -0.545 0.106 11.750 -10.499 -11.150 19 B_G68:U47_B B 68 ? B 47 ? 28 ? 1 B C 49 1_555 B G 26 1_555 -0.041 -0.031 -0.040 15.842 -19.839 0.540 20 B_C69:G46_B B 69 ? B 46 ? 19 1 1 B C 50 1_555 B G 25 1_555 -0.201 0.014 -0.024 4.666 -14.393 0.669 21 B_C70:G45_B B 70 ? B 45 ? 19 1 1 B C 51 1_555 B G 24 1_555 0.029 -0.268 -0.117 5.504 -12.944 -0.774 22 B_C71:G44_B B 71 ? B 44 ? 19 1 1 B U 52 1_555 B A 23 1_555 -0.305 -0.161 0.143 5.975 -9.416 4.734 23 B_U72:A43_B B 72 ? B 43 ? 20 1 1 B G 53 1_555 B C 22 1_555 -0.144 -0.016 0.037 2.239 -11.193 0.477 24 B_G73:C42_B B 73 ? B 42 ? 19 1 1 B C 54 1_555 B G 70 1_555 -0.119 -0.012 0.217 2.583 -13.434 -1.779 25 B_C74:G90_B B 74 ? B 90 ? 19 1 1 B G 55 1_555 B C 69 1_555 -0.253 -0.077 0.288 -6.921 -26.783 2.009 26 B_G75:C89_B B 75 ? B 89 ? 19 1 1 B G 56 1_555 B C 68 1_555 -0.153 -0.201 0.286 -6.106 -9.424 -1.429 27 B_G76:C88_B B 76 ? B 88 ? 19 1 1 B U 57 1_555 B A 67 1_555 -0.491 -0.156 0.496 -4.407 -12.967 -4.922 28 B_U77:A87_B B 77 ? B 87 ? 20 1 1 B C 58 1_555 B G 66 1_555 1.141 -0.406 0.182 2.705 -11.866 -1.436 29 B_C78:G86_B B 78 ? B 86 ? 19 1 1 B G 119 1_555 B C 65 1_555 -0.302 -0.094 -0.175 -8.017 -12.096 9.046 30 B_G139:C85_B B 139 ? B 85 ? 19 1 1 B C 120 1_555 B G 64 1_555 -0.084 -0.169 0.044 -1.602 -9.408 0.006 31 B_C140:G84_B B 140 ? B 84 ? 19 1 1 B A 121 1_555 B U 63 1_555 0.594 -0.356 0.093 -2.817 -15.299 -2.390 32 B_A141:U83_B B 141 ? B 83 ? 20 1 1 B G 122 1_555 B C 62 1_555 -0.194 -0.234 0.333 -3.743 -12.391 1.743 33 B_G142:C82_B B 142 ? B 82 ? 19 1 1 B G 123 1_555 B C 61 1_555 -0.357 0.080 0.120 -6.490 -14.767 2.711 34 B_G143:C81_B B 143 ? B 81 ? 19 1 1 B A 124 1_555 B U 60 1_555 -0.544 -0.045 0.178 -7.528 -17.802 -2.897 35 B_A144:U80_B B 144 ? B 80 ? 20 1 1 B U 31 1_555 B A 18 1_555 0.131 -0.181 0.143 -3.559 -9.982 4.087 36 B_U51:A38_B B 51 ? B 38 ? 20 1 1 B C 32 1_555 B G 17 1_555 0.407 -0.279 0.087 -6.864 -5.394 -1.119 37 B_C52:G37_B B 52 ? B 37 ? 19 1 1 B G 33 1_555 B C 16 1_555 -0.345 -0.280 0.281 10.070 4.520 -1.013 38 B_G53:C36_B B 53 ? B 36 ? 19 1 1 B A 34 1_555 B U 39 1_555 0.159 0.922 -0.061 -4.449 7.955 170.891 39 B_A54:U59_B B 54 ? B 59 ? 21 2 1 B A 75 1_555 B G 117 1_555 -6.795 -3.852 -0.338 -1.713 -11.877 -1.795 40 B_A95:G137_B B 95 ? B 137 ? 11 9 1 B G 76 1_555 B C 116 1_555 -0.561 0.319 0.308 -0.910 -8.546 10.948 41 B_G96:C136_B B 96 ? B 136 ? ? 1 1 B G 77 1_555 B C 115 1_555 -0.555 -0.180 -0.591 -3.747 -6.980 -1.365 42 B_G97:C135_B B 97 ? B 135 ? 19 1 1 B A 78 1_555 B U 114 1_555 -0.226 0.511 -0.096 1.476 -9.462 3.315 43 B_A98:U134_B B 98 ? B 134 ? ? ? 1 B C 79 1_555 B G 113 1_555 0.015 -0.372 0.354 1.840 -19.532 -0.220 44 B_C99:G133_B B 99 ? B 133 ? 19 1 1 B U 80 1_555 B A 112 1_555 -0.023 0.034 0.258 -1.658 -16.958 4.634 45 B_U100:A132_B B 100 ? B 132 ? 20 1 1 B G 81 1_555 B C 111 1_555 0.418 0.136 0.211 -10.804 -15.838 1.863 46 B_G101:C131_B B 101 ? B 131 ? 19 1 1 B G 82 1_555 B A 109 1_555 8.247 -4.899 0.287 -2.035 -11.315 -56.795 47 B_G102:A129_B B 102 ? B 129 ? ? ? 1 B A 85 1_555 B U 106 1_555 -4.206 -1.952 -0.071 1.378 -5.355 -90.352 48 B_A105:U126_B B 105 ? B 126 ? 24 4 1 B A 86 1_555 B A 105 1_555 -4.190 1.249 -0.111 14.085 -10.306 -108.665 49 B_A106:A125_B B 106 ? B 125 ? 5 4 1 B A 87 1_555 B C 104 1_555 -5.636 -2.641 -0.539 17.234 -30.560 -39.445 50 B_A107:C124_B B 107 ? B 124 ? ? ? 1 B C 88 1_555 B G 103 1_555 -0.056 -0.132 -0.448 11.553 -16.888 1.643 51 B_C108:G123_B B 108 ? B 123 ? 19 1 1 B C 89 1_555 B G 102 1_555 0.290 -0.015 -0.008 4.359 -11.809 0.808 52 B_C109:G122_B B 109 ? B 122 ? 19 1 1 B A 90 1_555 B U 101 1_555 0.119 -0.123 0.191 0.394 -12.262 0.999 53 B_A110:U121_B B 110 ? B 121 ? 20 1 1 B C 91 1_555 B G 100 1_555 0.332 -0.301 0.043 2.816 -16.864 -1.324 54 B_C111:G120_B B 111 ? B 120 ? 19 1 1 B A 92 1_555 B U 99 1_555 0.132 -0.047 -0.103 -4.804 -11.360 4.254 55 B_A112:U119_B B 112 ? B 119 ? 20 1 1 B G 93 1_555 B C 98 1_555 -0.240 -0.164 -0.358 -3.514 -2.434 1.684 56 B_G113:C118_B B 113 ? B 118 ? 19 1 1 B G 94 1_555 B A 97 1_555 7.641 -5.275 0.745 -1.249 -22.467 -43.624 57 B_G114:A117_B B 114 ? B 117 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B G 3 1_555 A C 20 1_555 B G 4 1_555 A C 19 1_555 0.123 -1.786 3.191 -0.978 5.901 29.663 -4.526 -0.419 2.786 11.380 1.886 30.247 1 BB_G23G24:C17C18_AA B 23 ? A 18 ? B 24 ? A 17 ? 1 B G 4 1_555 A C 19 1_555 B C 5 1_555 A G 18 1_555 -0.127 -1.355 3.381 -4.722 1.588 33.824 -2.563 -0.550 3.303 2.710 8.062 34.179 2 BB_G24C25:G16C17_AA B 24 ? A 17 ? B 25 ? A 16 ? 1 B C 5 1_555 A G 18 1_555 B U 6 1_555 A A 17 1_555 -0.503 -1.785 3.085 -3.688 6.746 32.884 -4.059 0.328 2.715 11.718 6.406 33.747 3 BB_C25U26:A15G16_AA B 25 ? A 16 ? B 26 ? A 15 ? 1 B U 6 1_555 A A 17 1_555 B U 7 1_555 A A 16 1_555 -0.173 -1.241 3.237 0.279 7.944 32.184 -3.443 0.348 2.856 14.064 -0.494 33.126 4 BB_U26U27:A14A15_AA B 26 ? A 15 ? B 27 ? A 14 ? 1 B U 7 1_555 A A 16 1_555 B U 8 1_555 A A 15 1_555 -0.239 -0.995 3.027 1.984 7.019 32.743 -2.755 0.706 2.742 12.262 -3.466 33.524 5 BB_U27U28:A13A14_AA B 27 ? A 14 ? B 28 ? A 13 ? 1 B U 8 1_555 A A 15 1_555 B A 9 1_555 A IU 14 1_555 0.321 -1.031 3.255 -1.926 13.352 31.110 -3.780 -0.840 2.584 23.557 3.398 33.842 6 BB_U28A29:IU12A13_AA B 28 ? A 13 ? B 29 ? A 12 ? 1 B A 9 1_555 A IU 14 1_555 B A 10 1_555 A U 13 1_555 0.047 -1.068 3.092 -0.584 3.400 32.285 -2.464 -0.179 2.966 6.092 1.047 32.464 7 BB_A29A30:U11IU12_AA B 29 ? A 12 ? B 30 ? A 11 ? 1 B A 10 1_555 A U 13 1_555 B G 11 1_555 A C 12 1_555 0.936 -2.354 3.519 4.130 8.875 25.474 -7.169 -0.975 2.678 19.244 -8.956 27.262 8 BB_A30G31:C10U11_AA B 30 ? A 11 ? B 31 ? A 10 ? 1 B G 11 1_555 A C 12 1_555 B U 12 1_555 A A 11 1_555 -0.497 -1.693 3.406 -1.400 5.995 36.347 -3.494 0.596 3.114 9.525 2.224 36.847 9 BB_G31U32:A9C10_AA B 31 ? A 10 ? B 32 ? A 9 ? 1 B U 12 1_555 A A 11 1_555 B U 13 1_555 A G 10 1_555 -0.588 -1.503 3.405 2.139 6.685 42.616 -2.701 1.010 3.114 9.124 -2.920 43.164 10 BB_U32U33:G8A9_AA B 32 ? A 9 ? B 33 ? A 8 ? 1 B U 13 1_555 A G 10 1_555 B C 40 1_555 A G 9 1_555 -3.378 -1.122 2.797 15.578 -3.595 64.533 -0.917 3.563 2.078 -3.314 -14.360 66.275 11 BB_U33C60:G7G8_AA B 33 ? A 8 ? B 60 ? A 7 ? 1 B C 40 1_555 A G 9 1_555 B G 41 1_555 A C 7 1_555 2.944 -1.610 3.331 -1.167 5.884 50.295 -2.291 -3.523 3.072 6.895 1.368 50.629 12 BB_C60G61:C5G7_AA B 60 ? A 7 ? B 61 ? A 5 ? 1 B G 41 1_555 A C 7 1_555 B G 42 1_555 A C 6 1_555 0.116 -1.774 3.428 0.559 9.313 29.457 -5.084 -0.113 2.754 17.761 -1.066 30.868 13 BB_G61G62:C4C5_AA B 61 ? A 5 ? B 62 ? A 4 ? 1 B G 42 1_555 A C 6 1_555 B C 43 1_555 A G 5 1_555 -0.178 -1.261 3.191 0.835 5.053 35.810 -2.708 0.399 2.986 8.167 -1.350 36.162 14 BB_G62C63:G3C4_AA B 62 ? A 4 ? B 63 ? A 3 ? 1 B C 43 1_555 A G 5 1_555 B G 44 1_555 A C 4 1_555 1.005 -2.010 3.325 1.605 5.986 31.378 -4.698 -1.544 2.948 10.934 -2.931 31.969 15 BB_C63G64:C2G3_AA B 63 ? A 3 ? B 64 ? A 2 ? 1 B G 44 1_555 A C 4 1_555 B G 45 1_555 A DA 2 1_555 -2.987 1.379 3.292 10.962 15.046 111.939 0.656 1.917 3.203 9.042 -6.588 112.955 16 BB_G64G65:DA-1C2_AA B 64 ? A 2 ? B 65 ? A -1 ? 1 B G 45 1_555 A DA 2 1_555 B U 28 1_555 B A 30 1_555 -2.601 6.647 2.245 166.508 40.624 -69.036 -3.598 -0.203 2.058 -20.753 85.063 -172.910 17 BB_G65U48:A50DA-1_BA B 65 ? A -1 ? B 48 ? B 50 ? 1 B U 28 1_555 B A 30 1_555 B G 48 1_555 B U 27 1_555 1.269 -3.181 -2.211 162.738 -43.247 57.562 -1.710 -1.064 0.720 -22.395 -84.272 169.825 18 BB_U48G68:U47A50_BB B 48 ? B 50 ? B 68 ? B 47 ? 1 B G 48 1_555 B U 27 1_555 B C 49 1_555 B G 26 1_555 0.212 -1.265 3.161 -3.057 6.265 42.437 -2.308 -0.574 2.933 8.586 4.189 42.980 19 BB_G68C69:G46U47_BB B 68 ? B 47 ? B 69 ? B 46 ? 1 B C 49 1_555 B G 26 1_555 B C 50 1_555 B G 25 1_555 -0.308 -1.676 3.489 -2.498 10.557 34.476 -4.195 0.145 2.883 17.289 4.092 36.093 20 BB_C69C70:G45G46_BB B 69 ? B 46 ? B 70 ? B 45 ? 1 B C 50 1_555 B G 25 1_555 B C 51 1_555 B G 24 1_555 -0.153 -1.485 3.111 0.699 11.916 31.520 -4.261 0.363 2.404 21.015 -1.233 33.651 21 BB_C70C71:G44G45_BB B 70 ? B 45 ? B 71 ? B 44 ? 1 B C 51 1_555 B G 24 1_555 B U 52 1_555 B A 23 1_555 0.592 -1.476 3.168 -1.438 9.946 30.226 -4.320 -1.316 2.537 18.444 2.666 31.815 22 BB_C71U72:A43G44_BB B 71 ? B 44 ? B 72 ? B 43 ? 1 B U 52 1_555 B A 23 1_555 B G 53 1_555 B C 22 1_555 -0.139 -1.656 3.183 -0.309 9.962 36.901 -3.676 0.177 2.664 15.397 0.478 38.178 23 BB_U72G73:C42A43_BB B 72 ? B 43 ? B 73 ? B 42 ? 1 B G 53 1_555 B C 22 1_555 B C 54 1_555 B G 70 1_555 0.833 -1.230 3.126 -1.259 7.292 38.288 -2.653 -1.388 2.826 10.992 1.898 38.970 24 BB_G73C74:G90C42_BB B 73 ? B 42 ? B 74 ? B 90 ? 1 B C 54 1_555 B G 70 1_555 B G 55 1_555 B C 69 1_555 0.701 -1.724 3.086 1.135 17.151 35.379 -4.280 -0.931 2.084 26.387 -1.746 39.213 25 BB_C74G75:C89G90_BB B 74 ? B 90 ? B 75 ? B 89 ? 1 B G 55 1_555 B C 69 1_555 B G 56 1_555 B C 68 1_555 -0.803 -1.685 3.080 -4.217 7.593 29.904 -4.444 0.774 2.667 14.338 7.963 31.112 26 BB_G75G76:C88C89_BB B 75 ? B 89 ? B 76 ? B 88 ? 1 B G 56 1_555 B C 68 1_555 B U 57 1_555 B A 67 1_555 -0.151 -1.438 3.192 -2.826 7.129 30.515 -3.895 -0.214 2.795 13.283 5.265 31.442 27 BB_G76U77:A87C88_BB B 76 ? B 88 ? B 77 ? B 87 ? 1 B U 57 1_555 B A 67 1_555 B C 58 1_555 B G 66 1_555 0.338 -1.491 3.044 2.503 5.433 38.569 -2.825 -0.233 2.832 8.165 -3.762 39.013 28 BB_U77C78:G86A87_BB B 77 ? B 87 ? B 78 ? B 86 ? 1 B C 58 1_555 B G 66 1_555 B G 119 1_555 B C 65 1_555 -0.828 -1.712 3.157 0.910 15.020 34.309 -4.375 1.395 2.219 24.079 -1.459 37.373 29 BB_C78G139:C85G86_BB B 78 ? B 86 ? B 139 ? B 85 ? 1 B G 119 1_555 B C 65 1_555 B C 120 1_555 B G 64 1_555 -0.585 -1.320 3.129 -2.277 5.529 30.982 -3.384 0.684 2.891 10.232 4.213 31.540 30 BB_G139C140:G84C85_BB B 139 ? B 85 ? B 140 ? B 84 ? 1 B C 120 1_555 B G 64 1_555 B A 121 1_555 B U 63 1_555 0.350 -1.582 3.165 2.713 11.633 34.482 -3.979 -0.223 2.537 18.934 -4.416 36.433 31 BB_C140A141:U83G84_BB B 140 ? B 84 ? B 141 ? B 83 ? 1 B A 121 1_555 B U 63 1_555 B G 122 1_555 B C 62 1_555 0.742 -1.581 3.078 0.953 10.725 27.076 -5.158 -1.297 2.320 21.843 -1.941 29.102 32 BB_A141G142:C82U83_BB B 141 ? B 83 ? B 142 ? B 82 ? 1 B G 122 1_555 B C 62 1_555 B G 123 1_555 B C 61 1_555 0.477 -1.686 3.150 3.022 8.226 32.850 -4.083 -0.377 2.693 14.232 -5.228 33.968 33 BB_G142G143:C81C82_BB B 142 ? B 82 ? B 143 ? B 81 ? 1 B G 123 1_555 B C 61 1_555 B A 124 1_555 B U 60 1_555 0.193 -1.566 3.076 2.740 2.510 31.579 -3.284 0.112 2.952 4.592 -5.013 31.791 34 BB_G143A144:U80C81_BB B 143 ? B 81 ? B 144 ? B 80 ? 1 B U 31 1_555 B A 18 1_555 B C 32 1_555 B G 17 1_555 0.204 -1.555 3.377 4.370 -0.207 35.930 -2.474 0.309 3.387 -0.335 -7.051 36.187 35 BB_U51C52:G37A38_BB B 51 ? B 38 ? B 52 ? B 37 ? 1 B C 32 1_555 B G 17 1_555 B G 33 1_555 B C 16 1_555 0.375 -1.119 2.996 -2.821 4.490 18.327 -5.376 -2.387 2.564 13.730 8.626 19.072 36 BB_C52G53:C36G37_BB B 52 ? B 37 ? B 53 ? B 36 ? 1 B G 33 1_555 B C 16 1_555 B A 34 1_555 B U 39 1_555 1.305 -2.502 3.431 -1.001 0.019 -49.336 2.995 1.484 3.456 -0.023 -1.200 -49.345 37 BB_G53A54:U59C36_BB B 53 ? B 36 ? B 54 ? B 59 ? 1 B A 75 1_555 B G 117 1_555 B G 76 1_555 B C 116 1_555 0.221 -0.510 3.481 -9.078 4.691 61.560 -0.719 -0.652 3.379 4.549 8.804 62.320 38 BB_A95G96:C136G137_BB B 95 ? B 137 ? B 96 ? B 136 ? 1 B G 76 1_555 B C 116 1_555 B G 77 1_555 B C 115 1_555 -1.004 -1.919 3.290 3.601 9.555 29.314 -5.245 2.503 2.422 18.199 -6.859 31.005 39 BB_G96G97:C135C136_BB B 96 ? B 136 ? B 97 ? B 135 ? 1 B G 77 1_555 B C 115 1_555 B A 78 1_555 B U 114 1_555 0.187 -1.223 3.172 -3.082 4.404 31.541 -2.970 -0.864 2.947 8.028 5.618 31.984 40 BB_G97A98:U134C135_BB B 97 ? B 135 ? B 98 ? B 134 ? 1 B A 78 1_555 B U 114 1_555 B C 79 1_555 B G 113 1_555 0.116 -1.320 3.253 -1.768 7.741 32.298 -3.536 -0.484 2.859 13.659 3.120 33.234 41 BB_A98C99:G133U134_BB B 98 ? B 134 ? B 99 ? B 133 ? 1 B C 79 1_555 B G 113 1_555 B U 80 1_555 B A 112 1_555 0.107 -2.010 3.119 0.431 9.039 32.018 -4.832 -0.124 2.477 15.992 -0.763 33.240 42 BB_C99U100:A132G133_BB B 99 ? B 133 ? B 100 ? B 132 ? 1 B U 80 1_555 B A 112 1_555 B G 81 1_555 B C 111 1_555 0.430 -1.829 3.333 2.373 7.900 34.351 -4.143 -0.370 2.877 13.142 -3.948 35.298 43 BB_U100G101:C131A132_BB B 100 ? B 132 ? B 101 ? B 131 ? 1 B G 81 1_555 B C 111 1_555 B G 82 1_555 B A 109 1_555 -1.555 -1.291 3.264 1.460 1.961 89.831 -0.953 1.130 3.221 1.388 -1.034 89.857 44 BB_G101G102:A129C131_BB B 101 ? B 131 ? B 102 ? B 129 ? 1 B A 85 1_555 B U 106 1_555 B A 86 1_555 B A 105 1_555 -0.657 -1.658 3.175 3.010 -5.011 34.853 -1.994 1.527 3.308 -8.293 -4.981 35.325 45 BB_A105A106:A125U126_BB B 105 ? B 126 ? B 106 ? B 125 ? 1 B A 86 1_555 B A 105 1_555 B A 87 1_555 B C 104 1_555 4.238 -1.800 3.152 -6.442 20.072 35.657 -4.130 -6.521 1.252 29.791 9.562 41.247 46 BB_A106A107:C124A125_BB B 106 ? B 125 ? B 107 ? B 124 ? 1 B A 87 1_555 B C 104 1_555 B C 88 1_555 B G 103 1_555 2.011 -1.568 3.563 -2.436 16.872 64.624 -2.117 -1.931 3.050 15.502 2.238 66.598 47 BB_A107C108:G123C124_BB B 107 ? B 124 ? B 108 ? B 123 ? 1 B C 88 1_555 B G 103 1_555 B C 89 1_555 B G 102 1_555 -0.293 -1.309 3.557 -3.565 7.658 33.778 -3.415 -0.080 3.207 12.929 6.019 34.789 48 BB_C108C109:G122G123_BB B 108 ? B 123 ? B 109 ? B 122 ? 1 B C 89 1_555 B G 102 1_555 B A 90 1_555 B U 101 1_555 0.281 -1.435 3.230 0.848 9.066 33.312 -3.731 -0.351 2.762 15.459 -1.446 34.500 49 BB_C109A110:U121G122_BB B 109 ? B 122 ? B 110 ? B 121 ? 1 B A 90 1_555 B U 101 1_555 B C 91 1_555 B G 100 1_555 -0.238 -1.108 3.233 0.405 4.383 33.116 -2.629 0.479 3.062 7.648 -0.706 33.399 50 BB_A110C111:G120U121_BB B 110 ? B 121 ? B 111 ? B 120 ? 1 B C 91 1_555 B G 100 1_555 B A 92 1_555 B U 99 1_555 0.523 -1.600 3.325 1.116 14.187 32.116 -4.623 -0.714 2.440 24.214 -1.905 35.052 51 BB_C111A112:U119G120_BB B 111 ? B 120 ? B 112 ? B 119 ? 1 B A 92 1_555 B U 99 1_555 B G 93 1_555 B C 98 1_555 0.337 -1.996 3.296 1.789 10.149 28.160 -5.766 -0.317 2.460 20.029 -3.530 29.951 52 BB_A112G113:C118U119_BB B 112 ? B 119 ? B 113 ? B 118 ? 1 B G 93 1_555 B C 98 1_555 B G 94 1_555 B A 97 1_555 -4.268 -1.465 3.468 -0.835 16.952 54.072 -2.513 4.463 2.984 18.150 0.894 56.481 53 BB_G113G114:A117C118_BB B 113 ? B 118 ? B 114 ? B 117 ? # _atom_sites.entry_id 2H0S _atom_sites.fract_transf_matrix[1][1] 0.005539 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024237 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014005 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C I MG N O P # loop_