HEADER HYDROLASE 16-MAY-06 2H1E TITLE TANDEM CHROMODOMAINS OF BUDDING YEAST CHD1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHROMO DOMAIN PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CHROMODOMAIN, RESIDUES 174-339; COMPND 5 SYNONYM: ATP-DEPENDENT HELICASE CHD1; COMPND 6 EC: 3.6.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: CHD1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3 LYSOGEN PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS CHD1, CHROMODOMAIN, TANDEM CHROMODOMAINS, THREE-STRANDED ANTIPARALLEL KEYWDS 2 B-SHEET, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.F.FLANAGAN IV,S.KHORASANIZADEH REVDAT 6 30-AUG-23 2H1E 1 SEQADV REVDAT 5 18-OCT-17 2H1E 1 REMARK REVDAT 4 13-JUL-11 2H1E 1 VERSN REVDAT 3 24-FEB-09 2H1E 1 VERSN REVDAT 2 22-MAY-07 2H1E 1 JRNL REVDAT 1 27-MAR-07 2H1E 0 JRNL AUTH J.F.FLANAGAN,B.J.BLUS,D.KIM,K.L.CLINES,F.RASTINEJAD, JRNL AUTH 2 S.KHORASANIZADEH JRNL TITL MOLECULAR IMPLICATIONS OF EVOLUTIONARY DIFFERENCES IN CHD JRNL TITL 2 DOUBLE CHROMODOMAINS. JRNL REF J.MOL.BIOL. V. 369 334 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17433364 JRNL DOI 10.1016/J.JMB.2007.03.024 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 25796 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1299 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.25 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1436 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.11 REMARK 3 BIN R VALUE (WORKING SET) : 0.2270 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.3590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2740 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 194 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.208 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.195 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.139 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.541 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2791 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3778 ; 2.226 ; 1.938 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 327 ;28.126 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 159 ;33.941 ;24.780 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 508 ;17.408 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;20.282 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 411 ; 0.266 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2143 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1306 ; 0.273 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1893 ; 0.318 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 305 ; 0.246 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 85 ; 0.266 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 27 ; 0.223 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1694 ; 2.250 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2661 ; 2.338 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1258 ; 4.383 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1117 ; 6.189 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 15 REMARK 3 RESIDUE RANGE : A 39 A 66 REMARK 3 ORIGIN FOR THE GROUP (A): 61.3400 43.2750 6.8380 REMARK 3 T TENSOR REMARK 3 T11: -0.0862 T22: -0.1639 REMARK 3 T33: -0.0722 T12: -0.0111 REMARK 3 T13: 0.0081 T23: 0.0222 REMARK 3 L TENSOR REMARK 3 L11: 3.6594 L22: 2.6588 REMARK 3 L33: 5.4953 L12: 0.5781 REMARK 3 L13: -1.8386 L23: 0.7380 REMARK 3 S TENSOR REMARK 3 S11: -0.2615 S12: 0.1116 S13: -0.4682 REMARK 3 S21: -0.0688 S22: 0.0583 S23: -0.1303 REMARK 3 S31: 0.5421 S32: -0.0711 S33: 0.2032 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 16 A 38 REMARK 3 ORIGIN FOR THE GROUP (A): 53.7750 53.7230 20.5850 REMARK 3 T TENSOR REMARK 3 T11: -0.0090 T22: -0.0058 REMARK 3 T33: -0.1272 T12: -0.0592 REMARK 3 T13: 0.0103 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 1.3980 L22: 2.1077 REMARK 3 L33: 1.0118 L12: 1.6446 REMARK 3 L13: -0.2548 L23: 0.1090 REMARK 3 S TENSOR REMARK 3 S11: 0.2871 S12: -0.1822 S13: 0.1040 REMARK 3 S21: 0.3429 S22: -0.3517 S23: 0.1090 REMARK 3 S31: 0.1636 S32: 0.0773 S33: 0.0646 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 113 A 161 REMARK 3 ORIGIN FOR THE GROUP (A): 69.6580 43.6080 -12.8690 REMARK 3 T TENSOR REMARK 3 T11: 0.0130 T22: -0.0599 REMARK 3 T33: 0.0041 T12: -0.0378 REMARK 3 T13: 0.1258 T23: -0.1065 REMARK 3 L TENSOR REMARK 3 L11: 2.3383 L22: 6.5306 REMARK 3 L33: 4.9703 L12: 3.2104 REMARK 3 L13: 3.0281 L23: 4.0265 REMARK 3 S TENSOR REMARK 3 S11: -0.2531 S12: 0.3394 S13: -0.4014 REMARK 3 S21: -0.7520 S22: 0.3672 S23: -0.4224 REMARK 3 S31: -0.2159 S32: 0.3631 S33: -0.1141 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 13 B 15 REMARK 3 RESIDUE RANGE : B 39 B 66 REMARK 3 ORIGIN FOR THE GROUP (A): 44.0620 60.9890 6.8810 REMARK 3 T TENSOR REMARK 3 T11: -0.1511 T22: -0.1146 REMARK 3 T33: -0.0842 T12: -0.0008 REMARK 3 T13: -0.0199 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 3.4041 L22: 2.8926 REMARK 3 L33: 3.7243 L12: 0.5676 REMARK 3 L13: -1.3534 L23: 1.7633 REMARK 3 S TENSOR REMARK 3 S11: 0.0261 S12: -0.0567 S13: 0.1657 REMARK 3 S21: 0.0573 S22: -0.1246 S23: 0.3863 REMARK 3 S31: 0.1453 S32: -0.3023 S33: 0.0985 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 16 B 38 REMARK 3 ORIGIN FOR THE GROUP (A): 53.7360 53.7540 -6.5850 REMARK 3 T TENSOR REMARK 3 T11: -0.0388 T22: -0.0543 REMARK 3 T33: -0.1091 T12: -0.0650 REMARK 3 T13: 0.0066 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 0.4651 L22: 0.9432 REMARK 3 L33: 1.9097 L12: 0.5064 REMARK 3 L13: 0.1672 L23: 1.0333 REMARK 3 S TENSOR REMARK 3 S11: -0.2080 S12: 0.1066 S13: 0.0204 REMARK 3 S21: -0.1404 S22: 0.1957 S23: 0.0709 REMARK 3 S31: -0.0513 S32: -0.0835 S33: 0.0123 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 67 B 112 REMARK 3 ORIGIN FOR THE GROUP (A): 55.9720 69.3300 -2.4930 REMARK 3 T TENSOR REMARK 3 T11: -0.0316 T22: -0.1040 REMARK 3 T33: -0.0724 T12: -0.0382 REMARK 3 T13: -0.0438 T23: 0.0515 REMARK 3 L TENSOR REMARK 3 L11: 4.3779 L22: 0.9769 REMARK 3 L33: 1.5087 L12: 1.8877 REMARK 3 L13: -0.4636 L23: 0.1970 REMARK 3 S TENSOR REMARK 3 S11: -0.0638 S12: 0.1923 S13: 0.3186 REMARK 3 S21: -0.2421 S22: 0.0929 S23: 0.2818 REMARK 3 S31: -0.2361 S32: 0.0224 S33: -0.0291 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 113 B 161 REMARK 3 ORIGIN FOR THE GROUP (A): 43.4890 69.7410 26.8710 REMARK 3 T TENSOR REMARK 3 T11: -0.0546 T22: 0.0218 REMARK 3 T33: 0.0023 T12: -0.0363 REMARK 3 T13: 0.0887 T23: -0.1422 REMARK 3 L TENSOR REMARK 3 L11: 7.0427 L22: 2.1360 REMARK 3 L33: 8.0744 L12: 2.2548 REMARK 3 L13: -5.2368 L23: -3.1076 REMARK 3 S TENSOR REMARK 3 S11: 0.1642 S12: -0.6939 S13: 0.2951 REMARK 3 S21: 0.2718 S22: -0.1056 S23: 0.4027 REMARK 3 S31: -0.1142 S32: 0.0205 S33: -0.0586 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2H1E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000037808. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25838 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 19.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10400 REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.44900 REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2B2Y, CHAIN A WITHOUT B1-B2 LOOP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MM BTP, 12MM NACL, 5MM TCEP, 0.9M REMARK 280 AMMONIUM SULFATE, 3.75% ISOPROPANOL, 4.5MG/ML YEAST CHD1 TANDEM REMARK 280 CHROMODOMAINS, PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 283K, PH 8.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 68.09250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 68.09250 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.75800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 68.09250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 14.37900 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 68.09250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 43.13700 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 68.09250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 68.09250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.75800 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 68.09250 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 43.13700 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 68.09250 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 14.37900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). ACCORDING TO AUTHORS, THE REMARK 300 BIOLOGICAL UNIT OF THE PROTEIN IN VIVO IS UNKNOWN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 136.18500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 136.18500 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 228 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 187 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 LYS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 GLU A 10 REMARK 465 LYS A 177 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 LYS B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 GLU B 10 REMARK 465 ASP B 11 REMARK 465 PHE B 12 REMARK 465 LYS B 176 REMARK 465 LYS B 177 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 11 CG OD1 OD2 REMARK 470 PHE A 12 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 95 CG OD1 OD2 REMARK 470 TYR A 97 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN A 151 CG OD1 ND2 REMARK 470 GLU A 169 CG CD OE1 OE2 REMARK 470 LYS A 176 CG CD CE NZ REMARK 470 ARG B 125 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 169 CG CD OE1 OE2 REMARK 470 GLN B 175 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP B 95 O HOH B 265 2.15 REMARK 500 O HOH A 242 O HOH B 206 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 52 CD - CE - NZ ANGL. DEV. = -24.5 DEGREES REMARK 500 PRO A 96 C - N - CA ANGL. DEV. = 13.8 DEGREES REMARK 500 PRO A 96 C - N - CD ANGL. DEV. = -14.2 DEGREES REMARK 500 PRO A 96 N - CA - C ANGL. DEV. = 25.9 DEGREES REMARK 500 TYR A 97 C - N - CA ANGL. DEV. = 19.4 DEGREES REMARK 500 ASP A 128 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASN A 151 CB - CA - C ANGL. DEV. = -21.9 DEGREES REMARK 500 ASN A 151 N - CA - C ANGL. DEV. = 20.7 DEGREES REMARK 500 ASP A 162 N - CA - C ANGL. DEV. = -17.3 DEGREES REMARK 500 ILE A 163 N - CA - C ANGL. DEV. = -16.3 DEGREES REMARK 500 HIS A 173 N - CA - CB ANGL. DEV. = -11.6 DEGREES REMARK 500 ASP B 39 CB - CA - C ANGL. DEV. = -14.5 DEGREES REMARK 500 ARG B 93 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ILE B 127 N - CA - C ANGL. DEV. = -16.4 DEGREES REMARK 500 ASP B 162 N - CA - CB ANGL. DEV. = -12.4 DEGREES REMARK 500 GLN B 175 N - CA - CB ANGL. DEV. = -11.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 16 -60.41 -94.78 REMARK 500 LYS A 35 50.06 -96.79 REMARK 500 ASP A 95 179.33 -53.48 REMARK 500 TYR A 97 -12.25 83.10 REMARK 500 ASP A 136 3.43 -65.84 REMARK 500 ARG A 149 15.58 57.80 REMARK 500 LEU A 150 -74.93 -85.45 REMARK 500 ASN A 151 -31.17 -147.19 REMARK 500 LYS B 35 48.16 -97.65 REMARK 500 ASP B 136 173.63 -52.69 REMARK 500 ARG B 149 16.23 56.01 REMARK 500 ALA B 167 56.25 -154.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 87 GLU A 88 146.09 REMARK 500 ASP A 162 ILE A 163 -142.17 REMARK 500 ILE B 126 ILE B 127 -138.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2B2T RELATED DB: PDB REMARK 900 THE HUMAN TANDEM CHROMODOMAINS IN COMPLEX WITH HISTONE H3 TAIL REMARK 900 TRIMETHYLATED ON K4 AND PHOSPHORYLATED ON T3 REMARK 900 RELATED ID: 2B2U RELATED DB: PDB REMARK 900 THE HUMAN TANDEM CHROMODOMAINS IN COMPLEX WITH HISTONE H3 TAIL REMARK 900 TRIMETHYLATED ON K4 AND ASYMMETRICALLY DIMETHYATED ON R2 REMARK 900 RELATED ID: 2B2V RELATED DB: PDB REMARK 900 THE HUMAN TANDEM CHROMODOMAINS IN COMPLEX WITH HISTONE H3 TAIL REMARK 900 MONOMETHYLATED ON K4 REMARK 900 RELATED ID: 2B2W RELATED DB: PDB REMARK 900 THE HUMAN TANDEM CHROMODOMAINS IN COMPLEX WITH HISTONE H3 TAIL REMARK 900 TRIMETHYLATED ON K4 REMARK 900 RELATED ID: 2B2Y RELATED DB: PDB REMARK 900 THE HUMAN TANDEM CHROMODOMAINS REMARK 900 RELATED ID: 1KNE RELATED DB: PDB REMARK 900 THE HP1 CHROMODOMAIN IN COMPLEX WITH HISTONE H3 TAIL TRIMETHYLATED REMARK 900 ON K9 REMARK 900 RELATED ID: 1PDQ RELATED DB: PDB REMARK 900 THE POLYCOMB CHROMODOMAIN IN COMPLEX WITH HISTONE H3 TAIL REMARK 900 TRIMETHYLATED ON K27 REMARK 900 RELATED ID: 1GUW RELATED DB: PDB REMARK 900 STRUCTURE OF THE CHROMODOMAIN FROM MOUSE HP1BETA IN COMPLEX WITH REMARK 900 THE LYSINE 9-METHYL HISTONE H3 N-TERMINAL PEPTIDE, NMR, 25 REMARK 900 STRUCTURES DBREF 2H1E A 10 175 UNP P32657 CHD1_YEAST 174 339 DBREF 2H1E B 10 175 UNP P32657 CHD1_YEAST 174 339 SEQADV 2H1E MET A 1 UNP P32657 INITIATING METHIONINE SEQADV 2H1E LYS A 2 UNP P32657 CLONING ARTIFACT SEQADV 2H1E LYS A 3 UNP P32657 CLONING ARTIFACT SEQADV 2H1E HIS A 4 UNP P32657 EXPRESSION TAG SEQADV 2H1E HIS A 5 UNP P32657 EXPRESSION TAG SEQADV 2H1E HIS A 6 UNP P32657 EXPRESSION TAG SEQADV 2H1E HIS A 7 UNP P32657 EXPRESSION TAG SEQADV 2H1E HIS A 8 UNP P32657 EXPRESSION TAG SEQADV 2H1E HIS A 9 UNP P32657 EXPRESSION TAG SEQADV 2H1E LYS A 176 UNP P32657 CLONING ARTIFACT SEQADV 2H1E LYS A 177 UNP P32657 CLONING ARTIFACT SEQADV 2H1E MET B 1 UNP P32657 INITIATING METHIONINE SEQADV 2H1E LYS B 2 UNP P32657 CLONING ARTIFACT SEQADV 2H1E LYS B 3 UNP P32657 CLONING ARTIFACT SEQADV 2H1E HIS B 4 UNP P32657 EXPRESSION TAG SEQADV 2H1E HIS B 5 UNP P32657 EXPRESSION TAG SEQADV 2H1E HIS B 6 UNP P32657 EXPRESSION TAG SEQADV 2H1E HIS B 7 UNP P32657 EXPRESSION TAG SEQADV 2H1E HIS B 8 UNP P32657 EXPRESSION TAG SEQADV 2H1E HIS B 9 UNP P32657 EXPRESSION TAG SEQADV 2H1E LYS B 176 UNP P32657 CLONING ARTIFACT SEQADV 2H1E LYS B 177 UNP P32657 CLONING ARTIFACT SEQRES 1 A 177 MET LYS LYS HIS HIS HIS HIS HIS HIS GLU ASP PHE HIS SEQRES 2 A 177 GLY ILE ASP ILE VAL ILE ASN HIS ARG LEU LYS THR SER SEQRES 3 A 177 LEU GLU GLU GLY LYS VAL LEU GLU LYS THR VAL PRO ASP SEQRES 4 A 177 LEU ASN ASN CYS LYS GLU ASN TYR GLU PHE LEU ILE LYS SEQRES 5 A 177 TRP THR ASP GLU SER HIS LEU HIS ASN THR TRP GLU THR SEQRES 6 A 177 TYR GLU SER ILE GLY GLN VAL ARG GLY LEU LYS ARG LEU SEQRES 7 A 177 ASP ASN TYR CYS LYS GLN PHE ILE ILE GLU ASP GLN GLN SEQRES 8 A 177 VAL ARG LEU ASP PRO TYR VAL THR ALA GLU ASP ILE GLU SEQRES 9 A 177 ILE MET ASP MET GLU ARG GLU ARG ARG LEU ASP GLU PHE SEQRES 10 A 177 GLU GLU PHE HIS VAL PRO GLU ARG ILE ILE ASP SER GLN SEQRES 11 A 177 ARG ALA SER LEU GLU ASP GLY THR SER GLN LEU GLN TYR SEQRES 12 A 177 LEU VAL LYS TRP ARG ARG LEU ASN TYR ASP GLU ALA THR SEQRES 13 A 177 TRP GLU ASN ALA THR ASP ILE VAL LYS LEU ALA PRO GLU SEQRES 14 A 177 GLN VAL LYS HIS PHE GLN LYS LYS SEQRES 1 B 177 MET LYS LYS HIS HIS HIS HIS HIS HIS GLU ASP PHE HIS SEQRES 2 B 177 GLY ILE ASP ILE VAL ILE ASN HIS ARG LEU LYS THR SER SEQRES 3 B 177 LEU GLU GLU GLY LYS VAL LEU GLU LYS THR VAL PRO ASP SEQRES 4 B 177 LEU ASN ASN CYS LYS GLU ASN TYR GLU PHE LEU ILE LYS SEQRES 5 B 177 TRP THR ASP GLU SER HIS LEU HIS ASN THR TRP GLU THR SEQRES 6 B 177 TYR GLU SER ILE GLY GLN VAL ARG GLY LEU LYS ARG LEU SEQRES 7 B 177 ASP ASN TYR CYS LYS GLN PHE ILE ILE GLU ASP GLN GLN SEQRES 8 B 177 VAL ARG LEU ASP PRO TYR VAL THR ALA GLU ASP ILE GLU SEQRES 9 B 177 ILE MET ASP MET GLU ARG GLU ARG ARG LEU ASP GLU PHE SEQRES 10 B 177 GLU GLU PHE HIS VAL PRO GLU ARG ILE ILE ASP SER GLN SEQRES 11 B 177 ARG ALA SER LEU GLU ASP GLY THR SER GLN LEU GLN TYR SEQRES 12 B 177 LEU VAL LYS TRP ARG ARG LEU ASN TYR ASP GLU ALA THR SEQRES 13 B 177 TRP GLU ASN ALA THR ASP ILE VAL LYS LEU ALA PRO GLU SEQRES 14 B 177 GLN VAL LYS HIS PHE GLN LYS LYS FORMUL 3 HOH *194(H2 O) HELIX 1 1 GLU A 28 LEU A 33 5 6 HELIX 2 2 ASP A 39 ASN A 46 1 8 HELIX 3 3 SER A 57 ASN A 61 5 5 HELIX 4 4 THR A 65 GLY A 70 1 6 HELIX 5 5 GLY A 74 ILE A 86 1 13 HELIX 6 6 ILE A 86 ASP A 95 1 10 HELIX 7 7 THR A 99 PHE A 120 1 22 HELIX 8 8 ASN A 151 ALA A 155 5 5 HELIX 9 9 ALA A 160 ALA A 167 1 8 HELIX 10 10 ALA A 167 GLN A 175 1 9 HELIX 11 11 GLU B 28 LEU B 33 5 6 HELIX 12 12 ASP B 39 ASN B 46 1 8 HELIX 13 13 SER B 57 ASN B 61 5 5 HELIX 14 14 THR B 65 GLY B 70 1 6 HELIX 15 15 GLY B 74 ILE B 86 1 13 HELIX 16 16 ILE B 86 ASP B 95 1 10 HELIX 17 17 THR B 99 PHE B 120 1 22 HELIX 18 18 ASN B 151 ALA B 155 5 5 HELIX 19 19 ALA B 160 ALA B 167 1 8 HELIX 20 20 ALA B 167 HIS B 173 1 7 SHEET 1 A 3 ILE A 15 LEU A 23 0 SHEET 2 A 3 TYR A 47 TRP A 53 -1 O LYS A 52 N ILE A 17 SHEET 3 A 3 THR A 62 GLU A 64 -1 O THR A 62 N ILE A 51 SHEET 1 B 3 PRO A 123 SER A 133 0 SHEET 2 B 3 SER A 139 TRP A 147 -1 O LEU A 144 N ILE A 127 SHEET 3 B 3 THR A 156 ASN A 159 -1 O GLU A 158 N TYR A 143 SHEET 1 C 3 ILE B 15 LEU B 23 0 SHEET 2 C 3 TYR B 47 TRP B 53 -1 O LEU B 50 N ASN B 20 SHEET 3 C 3 THR B 62 GLU B 64 -1 O THR B 62 N ILE B 51 SHEET 1 D 3 PRO B 123 SER B 133 0 SHEET 2 D 3 SER B 139 TRP B 147 -1 O LEU B 144 N ILE B 127 SHEET 3 D 3 THR B 156 ASN B 159 -1 O GLU B 158 N TYR B 143 CISPEP 1 PRO A 96 TYR A 97 0 0.50 CISPEP 2 LEU A 150 ASN A 151 0 2.52 CISPEP 3 PHE B 174 GLN B 175 0 -8.46 CRYST1 136.185 136.185 57.516 90.00 90.00 90.00 I 41 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007343 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007343 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017386 0.00000