HEADER UNKNOWN FUNCTION 16-MAY-06 2H1T TITLE CRYSTAL STRUCTURE OF A DUF1089 FAMILY PROTEIN (PA1994) FROM TITLE 2 PSEUDOMONAS AERUGINOSA AT 1.80 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: NP_250684.1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 8 25-JAN-23 2H1T 1 REMARK SEQADV LINK REVDAT 7 18-OCT-17 2H1T 1 REMARK REVDAT 6 13-JUL-11 2H1T 1 VERSN REVDAT 5 23-MAR-11 2H1T 1 HEADER TITLE KEYWDS REVDAT 4 03-NOV-10 2H1T 1 JRNL REVDAT 3 24-FEB-09 2H1T 1 VERSN REVDAT 2 03-OCT-06 2H1T 1 TITLE SOURCE KEYWDS JRNL REVDAT 1 30-MAY-06 2H1T 0 JRNL AUTH C.BAKOLITSA,A.KUMAR,D.MCMULLAN,S.S.KRISHNA,M.D.MILLER, JRNL AUTH 2 D.CARLTON,R.NAJMANOVICH,P.ABDUBEK,T.ASTAKHOVA,H.J.CHIU, JRNL AUTH 3 T.CLAYTON,M.C.DELLER,L.DUAN,Y.ELIAS,J.FEUERHELM,J.C.GRANT, JRNL AUTH 4 S.K.GRZECHNIK,G.W.HAN,L.JAROSZEWSKI,K.K.JIN,H.E.KLOCK, JRNL AUTH 5 M.W.KNUTH,P.KOZBIAL,D.MARCIANO,A.T.MORSE,E.NIGOGHOSSIAN, JRNL AUTH 6 L.OKACH,S.OOMMACHEN,J.PAULSEN,R.REYES,C.L.RIFE,C.V.TROUT, JRNL AUTH 7 H.VAN DEN BEDEM,D.WEEKES,A.WHITE,Q.XU,K.O.HODGSON,J.WOOLEY, JRNL AUTH 8 M.A.ELSLIGER,A.M.DEACON,A.GODZIK,S.A.LESLEY,I.A.WILSON JRNL TITL THE STRUCTURE OF THE FIRST REPRESENTATIVE OF PFAM FAMILY JRNL TITL 2 PF06475 REVEALS A NEW FOLD WITH POSSIBLE INVOLVEMENT IN JRNL TITL 3 GLYCOLIPID METABOLISM. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 66 1211 2010 JRNL REFN ESSN 1744-3091 JRNL PMID 20944213 JRNL DOI 10.1107/S1744309109022684 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.2 REMARK 3 NUMBER OF REFLECTIONS : 35699 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1772 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2267 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.2140 REMARK 3 BIN FREE R VALUE SET COUNT : 122 REMARK 3 BIN FREE R VALUE : 0.2960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3014 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 367 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 21.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.41000 REMARK 3 B22 (A**2) : 1.03000 REMARK 3 B33 (A**2) : -0.63000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.21000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.134 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.129 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.242 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3183 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2882 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4323 ; 1.578 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6637 ; 0.847 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 382 ; 6.584 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 172 ;33.986 ;22.558 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 497 ;12.443 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;19.567 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 441 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3583 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 721 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 522 ; 0.199 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3051 ; 0.203 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1404 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1980 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 333 ; 0.158 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.091 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 35 ; 0.314 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.194 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2228 ; 1.817 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 757 ; 0.348 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2981 ; 2.286 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1535 ; 3.251 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1335 ; 4.554 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 52 REMARK 3 ORIGIN FOR THE GROUP (A): 50.4530 17.2390 -1.9610 REMARK 3 T TENSOR REMARK 3 T11: -0.0089 T22: -0.0308 REMARK 3 T33: -0.0160 T12: -0.0207 REMARK 3 T13: -0.0069 T23: -0.0237 REMARK 3 L TENSOR REMARK 3 L11: 0.7593 L22: 1.0654 REMARK 3 L33: 2.1340 L12: -0.6477 REMARK 3 L13: 0.5651 L23: -1.4195 REMARK 3 S TENSOR REMARK 3 S11: -0.0310 S12: -0.0390 S13: 0.0615 REMARK 3 S21: 0.0077 S22: -0.0429 S23: -0.0600 REMARK 3 S31: -0.0763 S32: 0.0625 S33: 0.0739 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 53 A 187 REMARK 3 ORIGIN FOR THE GROUP (A): 53.8170 14.5970 16.9620 REMARK 3 T TENSOR REMARK 3 T11: -0.0497 T22: -0.0333 REMARK 3 T33: -0.0485 T12: -0.0083 REMARK 3 T13: -0.0079 T23: 0.0159 REMARK 3 L TENSOR REMARK 3 L11: 1.5990 L22: 1.4482 REMARK 3 L33: 0.7923 L12: 0.8464 REMARK 3 L13: -0.0408 L23: -0.0399 REMARK 3 S TENSOR REMARK 3 S11: 0.0083 S12: -0.1276 S13: 0.0300 REMARK 3 S21: 0.0083 S22: -0.0785 S23: 0.0441 REMARK 3 S31: -0.0327 S32: 0.1057 S33: 0.0702 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 57 REMARK 3 ORIGIN FOR THE GROUP (A): 47.2840 14.7000 -11.7640 REMARK 3 T TENSOR REMARK 3 T11: -0.0100 T22: -0.0262 REMARK 3 T33: -0.0156 T12: 0.0082 REMARK 3 T13: -0.0016 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 0.2195 L22: 0.4919 REMARK 3 L33: 2.1210 L12: -0.1031 REMARK 3 L13: 0.2182 L23: -1.0164 REMARK 3 S TENSOR REMARK 3 S11: 0.0004 S12: -0.0207 S13: -0.0188 REMARK 3 S21: -0.0246 S22: 0.0171 S23: -0.0147 REMARK 3 S31: 0.1141 S32: 0.0485 S33: -0.0175 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 58 B 187 REMARK 3 ORIGIN FOR THE GROUP (A): 39.1550 15.5910 -25.7400 REMARK 3 T TENSOR REMARK 3 T11: -0.0089 T22: -0.0607 REMARK 3 T33: -0.0331 T12: 0.0048 REMARK 3 T13: 0.0032 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 0.8505 L22: 0.8364 REMARK 3 L33: 0.8872 L12: -0.1442 REMARK 3 L13: 0.2917 L23: 0.3572 REMARK 3 S TENSOR REMARK 3 S11: -0.0107 S12: 0.0530 S13: 0.0138 REMARK 3 S21: 0.0659 S22: 0.0225 S23: 0.0481 REMARK 3 S31: 0.0945 S32: 0.0349 S33: -0.0118 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3. RESIDUE 1 IN CHAIN A AND RESIDUES 2-3 IN CHAIN REMARK 3 B ARE DISORDERED AND NOT INCLUDED IN THE MODEL. 4. EDO AND MPD REMARK 3 MOLECULES FROM THE CRYSTALLIZATION/CRYO SOLUTION ARE MODELED. 5. REMARK 3 ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. 6. DUE TO A STRONG REMARK 3 ICE RING, 3016 REFLECTIONS BETWEEN 1.91-1.93, 2.02-2.04, AND REMARK 3 2.23-2.27 ANGSTROMS WERE OMITTED FROM THE FINAL REFINEMENT. REMARK 4 REMARK 4 2H1T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000037822. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979291, 0.911617, 0.978940 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38719 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 28.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 3.520 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.49400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.390 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5.0% MPD, 10.0% PEG-6000, 0.1M HEPES, REMARK 280 PH 7.5, VAPOR DIFFUSION, SITTING DROP, NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 65.01500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.95000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 65.01500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.95000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 SER B 2 REMARK 465 ARG B 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 5 NE CZ NH1 NH2 REMARK 470 GLU B 91 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 35 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 116 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ASP B 151 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 188 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 188 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 189 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 189 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 190 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 190 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 191 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 192 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 193 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 191 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 194 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 361385 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH REMARK 999 TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED REMARK 999 BY THE TARGET SEQUENCE. DBREF 2H1T A 1 187 UNP Q9I2B5 Q9I2B5_PSEAE 1 187 DBREF 2H1T B 1 187 UNP Q9I2B5 Q9I2B5_PSEAE 1 187 SEQADV 2H1T GLY A 0 UNP Q9I2B5 EXPRESSION TAG SEQADV 2H1T MSE A 1 UNP Q9I2B5 MET 1 MODIFIED RESIDUE SEQADV 2H1T MSE A 143 UNP Q9I2B5 MET 143 MODIFIED RESIDUE SEQADV 2H1T GLY B 0 UNP Q9I2B5 EXPRESSION TAG SEQADV 2H1T MSE B 1 UNP Q9I2B5 MET 1 MODIFIED RESIDUE SEQADV 2H1T MSE B 143 UNP Q9I2B5 MET 143 MODIFIED RESIDUE SEQRES 1 A 188 GLY MSE SER ARG ASP ARG LEU TYR THR TRP ALA GLY LEU SEQRES 2 A 188 TRP ARG SER PRO SER SER SER TRP GLU ALA LEU ARG LEU SEQRES 3 A 188 GLU ASP ASP GLN ALA GLU SER GLN LEU ARG ALA PRO ASP SEQRES 4 A 188 GLU ARG SER GLY LEU PRO TYR GLN LEU ASP TYR ARG LEU SEQRES 5 A 188 ARG TRP ASP ALA ASP TRP HIS LEU ARG GLU ALA VAL PHE SEQRES 6 A 188 HIS VAL GLU SER GLU THR GLY VAL ARG LYS LEU HIS LEU SEQRES 7 A 188 LEU ALA ASP GLY ARG GLY HIS TRP GLN ASP GLY ASP GLY SEQRES 8 A 188 GLU ALA LEU PRO ALA PHE ASP GLY CYS LEU ASP ILE ASP SEQRES 9 A 188 ILE TRP PRO SER PRO PHE THR ASN THR PHE PRO ILE ARG SEQRES 10 A 188 ARG LEU GLY LEU ALA ASP GLY GLN ARG ALA GLU ILE ARG SEQRES 11 A 188 ALA LEU TYR ILE GLU ALA PRO ALA LEU GLU PRO ARG SER SEQRES 12 A 188 MSE ARG GLN ALA TYR THR ARG LEU ASP ALA SER HIS TYR SEQRES 13 A 188 LEU TYR GLU ASN LEU GLU GLY SER ALA PHE LYS ALA VAL SEQRES 14 A 188 LEU LEU VAL ASP GLU GLN GLY LEU VAL ILE ASP TYR PRO SEQRES 15 A 188 GLY LEU PHE GLN ARG LEU SEQRES 1 B 188 GLY MSE SER ARG ASP ARG LEU TYR THR TRP ALA GLY LEU SEQRES 2 B 188 TRP ARG SER PRO SER SER SER TRP GLU ALA LEU ARG LEU SEQRES 3 B 188 GLU ASP ASP GLN ALA GLU SER GLN LEU ARG ALA PRO ASP SEQRES 4 B 188 GLU ARG SER GLY LEU PRO TYR GLN LEU ASP TYR ARG LEU SEQRES 5 B 188 ARG TRP ASP ALA ASP TRP HIS LEU ARG GLU ALA VAL PHE SEQRES 6 B 188 HIS VAL GLU SER GLU THR GLY VAL ARG LYS LEU HIS LEU SEQRES 7 B 188 LEU ALA ASP GLY ARG GLY HIS TRP GLN ASP GLY ASP GLY SEQRES 8 B 188 GLU ALA LEU PRO ALA PHE ASP GLY CYS LEU ASP ILE ASP SEQRES 9 B 188 ILE TRP PRO SER PRO PHE THR ASN THR PHE PRO ILE ARG SEQRES 10 B 188 ARG LEU GLY LEU ALA ASP GLY GLN ARG ALA GLU ILE ARG SEQRES 11 B 188 ALA LEU TYR ILE GLU ALA PRO ALA LEU GLU PRO ARG SER SEQRES 12 B 188 MSE ARG GLN ALA TYR THR ARG LEU ASP ALA SER HIS TYR SEQRES 13 B 188 LEU TYR GLU ASN LEU GLU GLY SER ALA PHE LYS ALA VAL SEQRES 14 B 188 LEU LEU VAL ASP GLU GLN GLY LEU VAL ILE ASP TYR PRO SEQRES 15 B 188 GLY LEU PHE GLN ARG LEU MODRES 2H1T MSE A 143 MET SELENOMETHIONINE MODRES 2H1T MSE B 143 MET SELENOMETHIONINE HET MSE A 143 8 HET MSE B 143 8 HET EDO A 188 4 HET EDO A 189 4 HET EDO A 190 4 HET MPD A 191 8 HET EDO B 188 4 HET EDO B 189 4 HET EDO B 190 4 HET EDO B 191 4 HET EDO B 192 4 HET EDO B 193 4 HET MPD B 194 8 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 3 EDO 9(C2 H6 O2) FORMUL 6 MPD 2(C6 H14 O2) FORMUL 14 HOH *367(H2 O) HELIX 1 1 LEU A 93 ASP A 97 5 5 HELIX 2 2 SER A 107 THR A 110 5 4 HELIX 3 3 ASN A 111 GLY A 119 1 9 HELIX 4 4 LEU B 93 ASP B 97 5 5 HELIX 5 5 SER B 107 THR B 110 5 4 HELIX 6 6 ASN B 111 GLY B 119 1 9 SHEET 1 A14 TRP B 85 ASP B 87 0 SHEET 2 A14 GLY B 71 ALA B 79 -1 N LEU B 78 O GLN B 86 SHEET 3 A14 LEU B 59 SER B 68 -1 N ALA B 62 O LEU B 77 SHEET 4 A14 PRO B 44 TRP B 53 -1 N ARG B 52 O ARG B 60 SHEET 5 A14 GLN B 29 PRO B 37 -1 N LEU B 34 O LEU B 47 SHEET 6 A14 TRP B 20 LEU B 25 -1 N ARG B 24 O GLU B 31 SHEET 7 A14 ARG A 5 GLY A 11 -1 N TYR A 7 O LEU B 23 SHEET 8 A14 PHE B 184 ARG B 186 -1 O GLN B 185 N ALA A 10 SHEET 9 A14 VAL B 177 TYR B 180 -1 N TYR B 180 O PHE B 184 SHEET 10 A14 LYS B 166 VAL B 171 -1 N LEU B 170 O ILE B 178 SHEET 11 A14 HIS B 154 ASN B 159 -1 N TYR B 157 O ALA B 167 SHEET 12 A14 ARG B 141 ASP B 151 -1 N LEU B 150 O HIS B 154 SHEET 13 A14 ARG B 125 GLU B 134 -1 N ALA B 130 O MSE B 143 SHEET 14 A14 ASP B 101 TRP B 105 1 N ASP B 101 O LEU B 131 SHEET 1 B 2 SER A 15 SER A 17 0 SHEET 2 B 2 SER B 15 SER B 17 -1 O SER B 15 N SER A 17 SHEET 1 C14 TRP A 85 ASP A 87 0 SHEET 2 C14 GLY A 71 ALA A 79 -1 N LEU A 78 O GLN A 86 SHEET 3 C14 LEU A 59 SER A 68 -1 N VAL A 66 O ARG A 73 SHEET 4 C14 PRO A 44 TRP A 53 -1 N ASP A 48 O HIS A 65 SHEET 5 C14 GLN A 29 PRO A 37 -1 N LEU A 34 O LEU A 47 SHEET 6 C14 TRP A 20 LEU A 25 -1 N TRP A 20 O ARG A 35 SHEET 7 C14 ARG B 5 GLY B 11 -1 O TYR B 7 N LEU A 23 SHEET 8 C14 PHE A 184 ARG A 186 -1 N GLN A 185 O ALA B 10 SHEET 9 C14 VAL A 177 TYR A 180 -1 N ILE A 178 O ARG A 186 SHEET 10 C14 LYS A 166 VAL A 171 -1 N LEU A 170 O ILE A 178 SHEET 11 C14 HIS A 154 ASN A 159 -1 N TYR A 157 O ALA A 167 SHEET 12 C14 ARG A 141 ASP A 151 -1 N THR A 148 O LEU A 156 SHEET 13 C14 ARG A 125 GLU A 134 -1 N ALA A 130 O MSE A 143 SHEET 14 C14 ASP A 101 TRP A 105 1 N ASP A 101 O LEU A 131 LINK C SER A 142 N MSE A 143 1555 1555 1.33 LINK C MSE A 143 N ARG A 144 1555 1555 1.33 LINK C SER B 142 N MSE B 143 1555 1555 1.34 LINK C MSE B 143 N ARG B 144 1555 1555 1.34 CISPEP 1 TRP A 105 PRO A 106 0 -4.92 CISPEP 2 ALA A 135 PRO A 136 0 1.27 CISPEP 3 TRP B 105 PRO B 106 0 -1.55 CISPEP 4 ALA B 135 PRO B 136 0 1.86 SITE 1 AC1 5 ARG A 5 LEU A 6 TYR A 7 HOH A 201 SITE 2 AC1 5 ARG B 186 SITE 1 AC2 4 GLU B 39 TYR B 132 GLU B 134 MPD B 194 SITE 1 AC3 4 GLU A 31 ASP A 48 VAL A 63 HOH A 270 SITE 1 AC4 4 GLU B 31 TYR B 49 ARG B 50 HIS B 65 SITE 1 AC5 3 ASP B 4 HOH B 205 HOH B 325 SITE 1 AC6 6 TRP A 20 ARG A 35 PRO B 44 GLU B 67 SITE 2 AC6 6 SER B 68 GLU B 69 SITE 1 AC7 5 ASP B 38 ARG B 40 SER B 41 HOH B 263 SITE 2 AC7 5 HOH B 381 SITE 1 AC8 4 ALA A 164 ASP B 151 ALA B 152 SER B 153 SITE 1 AC9 5 ALA B 152 GLY B 175 HOH B 283 HOH B 349 SITE 2 AC9 5 HOH B 383 SITE 1 BC1 9 TYR A 132 MSE A 143 TYR A 157 ASN A 159 SITE 2 BC1 9 PHE A 165 HOH A 215 HOH A 311 HOH A 331 SITE 3 BC1 9 HOH A 365 SITE 1 BC2 6 TYR B 132 TYR B 157 ASN B 159 EDO B 188 SITE 2 BC2 6 HOH B 243 HOH B 336 CRYST1 130.030 41.900 78.650 90.00 91.22 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007690 0.000000 0.000160 0.00000 SCALE2 0.000000 0.023870 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012720 0.00000