HEADER TRANSFERASE 18-MAY-06 2H2A TITLE CRYSTAL STRUCTURE OF NICOTINIC ACID MONONUCLEOTIDE ADENYLYLTRANSFERASE TITLE 2 FROM STAPHYLOCOCCUS AUREUS: PRODUCT BOUND FORM 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE NICOTINATE-NUCLEOTIDE ADENYLYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DEAMIDO-NAD+, PYROPHOSPHORYLASE, DEAMIDO-NAD+, COMPND 5 DIPHOSPHORYLASE, NICOTINATE MONONUCLEOTIDE ADENYLYLTRANSFERASE, NAMN COMPND 6 ADENYLYLTRANSFERASE; COMPND 7 EC: 2.7.7.18; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: NADD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: M15[PREP4]; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS NADD, NAMNAT, NMNAT, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.HAN REVDAT 4 30-AUG-23 2H2A 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 2H2A 1 VERSN REVDAT 2 24-FEB-09 2H2A 1 VERSN REVDAT 1 08-AUG-06 2H2A 0 JRNL AUTH S.HAN,M.D.FORMAN,P.LOULAKIS,M.H.ROSNER,Z.XIE,H.WANG, JRNL AUTH 2 D.E.DANLEY,W.YUAN,J.SCHAFER,Z.XU JRNL TITL CRYSTAL STRUCTURE OF NICOTINIC ACID MONONUCLEOTIDE JRNL TITL 2 ADENYLYLTRANSFERASE FROM STAPHYLOCCOCUS AUREUS: STRUCTURAL JRNL TITL 3 BASIS FOR NAAD INTERACTION IN FUNCTIONAL DIMER. JRNL REF J.MOL.BIOL. V. 360 814 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16784754 JRNL DOI 10.1016/J.JMB.2006.05.055 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 29357 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1544 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2149 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE SET COUNT : 100 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3116 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 95 REMARK 3 SOLVENT ATOMS : 170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.06000 REMARK 3 B22 (A**2) : 0.17000 REMARK 3 B33 (A**2) : 0.90000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.198 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.173 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.114 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.193 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3287 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4445 ; 1.746 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 376 ; 6.005 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 164 ;38.410 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 590 ;16.013 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;21.942 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 478 ; 0.143 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2468 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1203 ; 0.190 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2215 ; 0.296 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 153 ; 0.178 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 34 ; 0.152 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.413 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1976 ; 1.301 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3066 ; 2.039 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1550 ; 2.759 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1379 ; 4.023 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2H2A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000037839. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : 175 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35401 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.53200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.830 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 2H29 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MG/ML PROTEIN, 50MM HEPES PH 7.2, REMARK 280 300MM KCL, 0.5MM TCEP, 1MM EDTA MIXED IN EQUAL VOLUME OF 20% REMARK 280 PEG8000(W/V), 100MM MES PH 6.0, 0.2M CA(OAC)2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.15150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.55650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.82450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.55650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.15150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.82450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 136 O HOH A 1320 1.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1364 O HOH B 1356 3555 1.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 52 CB - CA - C ANGL. DEV. = 12.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 47 73.82 -114.62 REMARK 500 HIS A 48 -100.53 -59.30 REMARK 500 PHE A 50 97.22 -58.71 REMARK 500 HIS A 96 51.14 -150.57 REMARK 500 VAL A 171 -38.55 76.34 REMARK 500 HIS B 47 61.32 -114.67 REMARK 500 HIS B 96 53.37 -150.65 REMARK 500 VAL B 171 -44.00 74.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 71 OD1 REMARK 620 2 ASP A 71 OD2 49.1 REMARK 620 3 GOL A1303 O2 83.4 101.0 REMARK 620 4 GOL A1303 O3 107.8 74.6 64.9 REMARK 620 5 HOH A1305 O 156.6 154.2 86.9 87.0 REMARK 620 6 HOH A1388 O 114.6 73.6 143.5 79.0 85.4 REMARK 620 7 HOH A1389 O 80.8 89.4 147.9 146.9 96.9 68.6 REMARK 620 8 HOH A1390 O 78.6 126.9 78.0 140.9 78.6 134.7 71.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DND A 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DND B 1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2H29 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NICOTINIC ACID MONONUCLEOTIDE REMARK 900 ADENYLYLTRANSFERASE FROM STAPHYLOCOCCUS AUREUS: PRODUCT BOUND FORM 1 DBREF 2H2A A 1 189 UNP Q5HFG7 NADD_STAAC 1 189 DBREF 2H2A B 1 189 UNP Q5HFG7 NADD_STAAC 1 189 SEQADV 2H2A CSX A 73 UNP Q5HFG7 CYS 73 MODIFIED RESIDUE SEQADV 2H2A CSX B 73 UNP Q5HFG7 CYS 73 MODIFIED RESIDUE SEQRES 1 A 189 MET LYS LYS ILE VAL LEU TYR GLY GLY GLN PHE ASN PRO SEQRES 2 A 189 ILE HIS THR ALA HIS MET ILE VAL ALA SER GLU VAL PHE SEQRES 3 A 189 HIS GLU LEU GLN PRO ASP GLU PHE TYR PHE LEU PRO SER SEQRES 4 A 189 PHE MET SER PRO LEU LYS LYS HIS HIS ASP PHE ILE ASP SEQRES 5 A 189 VAL GLN HIS ARG LEU THR MET ILE GLN MET ILE ILE ASP SEQRES 6 A 189 GLU LEU GLY PHE GLY ASP ILE CSX ASP ASP GLU ILE LYS SEQRES 7 A 189 ARG GLY GLY GLN SER TYR THR TYR ASP THR ILE LYS ALA SEQRES 8 A 189 PHE LYS GLU GLN HIS LYS ASP SER GLU LEU TYR PHE VAL SEQRES 9 A 189 ILE GLY THR ASP GLN TYR ASN GLN LEU GLU LYS TRP TYR SEQRES 10 A 189 GLN ILE GLU TYR LEU LYS GLU MET VAL THR PHE VAL VAL SEQRES 11 A 189 VAL ASN ARG ASP LYS ASN SER GLN ASN VAL GLU ASN ALA SEQRES 12 A 189 MET ILE ALA ILE GLN ILE PRO ARG VAL ASP ILE SER SER SEQRES 13 A 189 THR MET ILE ARG GLN ARG VAL SER GLU GLY LYS SER ILE SEQRES 14 A 189 GLN VAL LEU VAL PRO LYS SER VAL GLU ASN TYR ILE LYS SEQRES 15 A 189 GLY GLU GLY LEU TYR GLU HIS SEQRES 1 B 189 MET LYS LYS ILE VAL LEU TYR GLY GLY GLN PHE ASN PRO SEQRES 2 B 189 ILE HIS THR ALA HIS MET ILE VAL ALA SER GLU VAL PHE SEQRES 3 B 189 HIS GLU LEU GLN PRO ASP GLU PHE TYR PHE LEU PRO SER SEQRES 4 B 189 PHE MET SER PRO LEU LYS LYS HIS HIS ASP PHE ILE ASP SEQRES 5 B 189 VAL GLN HIS ARG LEU THR MET ILE GLN MET ILE ILE ASP SEQRES 6 B 189 GLU LEU GLY PHE GLY ASP ILE CSX ASP ASP GLU ILE LYS SEQRES 7 B 189 ARG GLY GLY GLN SER TYR THR TYR ASP THR ILE LYS ALA SEQRES 8 B 189 PHE LYS GLU GLN HIS LYS ASP SER GLU LEU TYR PHE VAL SEQRES 9 B 189 ILE GLY THR ASP GLN TYR ASN GLN LEU GLU LYS TRP TYR SEQRES 10 B 189 GLN ILE GLU TYR LEU LYS GLU MET VAL THR PHE VAL VAL SEQRES 11 B 189 VAL ASN ARG ASP LYS ASN SER GLN ASN VAL GLU ASN ALA SEQRES 12 B 189 MET ILE ALA ILE GLN ILE PRO ARG VAL ASP ILE SER SER SEQRES 13 B 189 THR MET ILE ARG GLN ARG VAL SER GLU GLY LYS SER ILE SEQRES 14 B 189 GLN VAL LEU VAL PRO LYS SER VAL GLU ASN TYR ILE LYS SEQRES 15 B 189 GLY GLU GLY LEU TYR GLU HIS MODRES 2H2A CSX A 73 CYS S-OXY CYSTEINE MODRES 2H2A CSX B 73 CYS S-OXY CYSTEINE HET CSX A 73 7 HET CSX B 73 7 HET CA A1304 1 HET DND A1301 44 HET GOL A1303 6 HET DND B1302 44 HETNAM CSX S-OXY CYSTEINE HETNAM CA CALCIUM ION HETNAM DND NICOTINIC ACID ADENINE DINUCLEOTIDE HETNAM GOL GLYCEROL HETSYN DND DEAMIDO-NAD+ HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CSX 2(C3 H7 N O3 S) FORMUL 3 CA CA 2+ FORMUL 4 DND 2(C21 H27 N6 O15 P2 1+) FORMUL 5 GOL C3 H8 O3 FORMUL 7 HOH *170(H2 O) HELIX 1 1 HIS A 15 GLN A 30 1 16 HELIX 2 2 ASP A 52 GLY A 68 1 17 HELIX 3 3 ASP A 74 GLY A 80 1 7 HELIX 4 4 TYR A 84 GLN A 95 1 12 HELIX 5 5 THR A 107 ASN A 111 1 5 HELIX 6 6 GLN A 112 TRP A 116 5 5 HELIX 7 7 GLN A 118 VAL A 126 1 9 HELIX 8 8 SER A 155 GLU A 165 1 11 HELIX 9 9 PRO A 174 GLY A 185 1 12 HELIX 10 10 HIS B 15 GLN B 30 1 16 HELIX 11 11 ASP B 52 GLY B 68 1 17 HELIX 12 12 ASP B 74 GLY B 80 1 7 HELIX 13 13 TYR B 84 GLU B 94 1 11 HELIX 14 14 THR B 107 ASN B 111 1 5 HELIX 15 15 GLN B 112 TRP B 116 5 5 HELIX 16 16 GLN B 118 VAL B 126 1 9 HELIX 17 17 SER B 155 GLU B 165 1 11 HELIX 18 18 PRO B 174 GLY B 185 1 12 SHEET 1 A 6 ASP A 71 ILE A 72 0 SHEET 2 A 6 GLU A 33 PRO A 38 1 N PHE A 36 O ASP A 71 SHEET 3 A 6 LYS A 2 GLY A 9 1 N VAL A 5 O TYR A 35 SHEET 4 A 6 SER A 99 GLY A 106 1 O GLU A 100 N ILE A 4 SHEET 5 A 6 THR A 127 VAL A 131 1 O VAL A 129 N PHE A 103 SHEET 6 A 6 ILE A 145 ILE A 147 1 O ILE A 145 N VAL A 130 SHEET 1 B 6 ASP B 71 ILE B 72 0 SHEET 2 B 6 GLU B 33 PRO B 38 1 N PHE B 36 O ASP B 71 SHEET 3 B 6 LYS B 2 GLY B 9 1 N TYR B 7 O TYR B 35 SHEET 4 B 6 SER B 99 GLY B 106 1 O GLU B 100 N LYS B 2 SHEET 5 B 6 THR B 127 VAL B 131 1 O VAL B 129 N PHE B 103 SHEET 6 B 6 ILE B 145 ILE B 147 1 O ILE B 145 N VAL B 130 LINK C ILE A 72 N CSX A 73 1555 1555 1.34 LINK C CSX A 73 N ASP A 74 1555 1555 1.34 LINK C ILE B 72 N CSX B 73 1555 1555 1.34 LINK C CSX B 73 N ASP B 74 1555 1555 1.34 LINK OD1 ASP A 71 CA CA A1304 1555 1555 2.64 LINK OD2 ASP A 71 CA CA A1304 1555 1555 2.70 LINK O2 GOL A1303 CA CA A1304 1555 1555 2.65 LINK O3 GOL A1303 CA CA A1304 1555 1555 2.48 LINK CA CA A1304 O HOH A1305 1555 1555 2.56 LINK CA CA A1304 O HOH A1388 1555 1555 2.61 LINK CA CA A1304 O HOH A1389 1555 1555 2.47 LINK CA CA A1304 O HOH A1390 1555 1555 2.44 CISPEP 1 ASN A 12 PRO A 13 0 -1.02 CISPEP 2 ASN B 12 PRO B 13 0 -2.32 SITE 1 AC1 6 ASP A 71 GOL A1303 HOH A1305 HOH A1388 SITE 2 AC1 6 HOH A1389 HOH A1390 SITE 1 AC2 32 TYR A 7 GLY A 8 GLY A 9 GLN A 10 SITE 2 AC2 32 PHE A 11 ALA A 17 SER A 42 PRO A 43 SITE 3 AC2 32 LYS A 45 SER A 83 TYR A 84 THR A 85 SITE 4 AC2 32 PHE A 103 ILE A 105 GLY A 106 ASP A 108 SITE 5 AC2 32 GLN A 109 TRP A 116 TYR A 117 ASN A 132 SITE 6 AC2 32 ARG A 133 VAL A 152 ILE A 154 HOH A1309 SITE 7 AC2 32 HOH A1310 HOH A1312 HOH A1314 HOH A1315 SITE 8 AC2 32 HOH A1317 HOH A1335 HOH A1338 HOH A1348 SITE 1 AC3 33 TYR B 7 GLY B 8 GLY B 9 GLN B 10 SITE 2 AC3 33 PHE B 11 ALA B 17 SER B 42 PRO B 43 SITE 3 AC3 33 LYS B 45 SER B 83 TYR B 84 THR B 85 SITE 4 AC3 33 PHE B 103 ILE B 105 GLY B 106 ASP B 108 SITE 5 AC3 33 GLN B 109 TRP B 116 TYR B 117 ASN B 132 SITE 6 AC3 33 ARG B 133 VAL B 152 ILE B 154 HOH B1304 SITE 7 AC3 33 HOH B1305 HOH B1310 HOH B1311 HOH B1330 SITE 8 AC3 33 HOH B1331 HOH B1332 HOH B1334 HOH B1340 SITE 9 AC3 33 HOH B1342 SITE 1 AC4 9 GLU A 33 TYR A 35 ASP A 71 CA A1304 SITE 2 AC4 9 HOH A1387 GLN B 61 ILE B 64 GLY B 70 SITE 3 AC4 9 ASP B 71 CRYST1 62.303 83.649 99.113 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016051 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011955 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010089 0.00000