HEADER OXYGEN STORAGE/TRANSPORT 22-MAY-06 2H35 TITLE SOLUTION STRUCTURE OF HUMAN NORMAL ADULT HEMOGLOBIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMOGLOBIN ALPHA SUBUNIT; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: HEMOGLOBIN ALPHA CHAIN, ALPHA-GLOBIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HEMOGLOBIN BETA SUBUNIT; COMPND 8 CHAIN: B, D; COMPND 9 SYNONYM: HEMOGLOBIN BETA CHAIN, BETA-GLOBIN; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HEMOGLOBIN, HBCO A, OXYGEN STORAGE-TRANSPORT COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.S.FAN,D.YANG REVDAT 5 29-MAY-24 2H35 1 REMARK REVDAT 4 22-MAR-23 2H35 1 COMPND REMARK HET HETNAM REVDAT 4 2 1 HETSYN FORMUL ATOM REVDAT 3 09-MAR-22 2H35 1 REMARK REVDAT 2 24-FEB-09 2H35 1 VERSN REVDAT 1 14-NOV-06 2H35 0 JRNL AUTH Y.XU,Y.ZHENG,J.S.FAN,D.YANG JRNL TITL A NEW STRATEGY FOR STRUCTURE DETERMINATION OF LARGE PROTEINS JRNL TITL 2 IN SOLUTION WITHOUT DEUTERATION JRNL REF NAT.METHODS V. 3 931 2006 JRNL REFN ISSN 1548-7091 JRNL PMID 17060917 JRNL DOI 10.1038/NMETH938 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 2.3, XPLOR-NIH 2.14 REMARK 3 AUTHORS : F. DELAGLIO (NMRPIPE), A.T. BRUNGER (XPLOR-NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2H35 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000037870. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100 MM REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : ALPHA_SUBUNIT 1.0MM, NA REMARK 210 PHOSPHATE 0.1M, 90% H2O, 10% D2O; REMARK 210 BETA_SUBUNIT 1.0MM, NA REMARK 210 PHOSPHATE 0.1M, 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 4D_13C/15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 1.3, XPLOR-NIH 2.14 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH ACCEPTABLE REMARK 210 COVALENT GEOMETRY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS, STRUCTURES WITH THE REMARK 210 LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY C 57 HZ3 LYS C 61 1.39 REMARK 500 O GLY A 57 HZ3 LYS A 61 1.39 REMARK 500 O LYS A 127 H ALA A 130 1.43 REMARK 500 O LYS C 127 H ALA C 130 1.43 REMARK 500 O THR C 118 H ALA C 120 1.43 REMARK 500 O THR A 118 H ALA A 120 1.43 REMARK 500 O LEU A 83 HD1 HIS A 87 1.45 REMARK 500 O LEU C 83 HD1 HIS C 87 1.45 REMARK 500 O LYS D 59 H HIS D 63 1.45 REMARK 500 O LYS B 59 H HIS B 63 1.46 REMARK 500 O GLY D 74 H HIS D 77 1.50 REMARK 500 O GLY B 74 H HIS B 77 1.50 REMARK 500 O LEU C 129 H SER C 133 1.50 REMARK 500 O LEU A 129 H SER A 133 1.50 REMARK 500 O THR B 87 H LEU B 91 1.52 REMARK 500 O THR D 87 H LEU D 91 1.52 REMARK 500 O GLU B 22 H GLY B 25 1.56 REMARK 500 O GLU D 22 H GLY D 25 1.56 REMARK 500 O ASN C 97 H LEU C 100 1.56 REMARK 500 O ASN A 97 H LEU A 100 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 2 163.25 55.94 REMARK 500 1 SER A 3 -47.80 176.24 REMARK 500 1 PRO A 4 -170.24 -50.44 REMARK 500 1 ASP A 6 -29.09 -39.51 REMARK 500 1 ALA A 19 29.00 -66.28 REMARK 500 1 PHE A 36 66.00 21.44 REMARK 500 1 PHE A 43 79.90 55.04 REMARK 500 1 HIS A 45 35.13 90.87 REMARK 500 1 PHE A 46 31.10 -154.35 REMARK 500 1 ASP A 47 88.72 42.26 REMARK 500 1 HIS A 50 -162.53 -57.81 REMARK 500 1 ALA A 53 -10.73 -47.68 REMARK 500 1 HIS A 72 -61.25 -141.90 REMARK 500 1 VAL A 73 12.18 44.72 REMARK 500 1 ASP A 75 28.02 -178.53 REMARK 500 1 LYS A 90 147.07 -172.11 REMARK 500 1 LEU A 91 -20.06 71.31 REMARK 500 1 ARG A 92 27.22 43.12 REMARK 500 1 VAL A 93 165.15 -46.98 REMARK 500 1 PRO A 95 -10.85 -46.72 REMARK 500 1 ALA A 111 -3.62 -56.76 REMARK 500 1 HIS A 112 -85.59 -143.24 REMARK 500 1 PRO A 114 -98.78 -84.28 REMARK 500 1 GLU A 116 -6.65 116.62 REMARK 500 1 PHE A 117 33.30 79.53 REMARK 500 1 PRO A 119 21.08 -50.91 REMARK 500 1 ALA A 120 -32.52 -149.44 REMARK 500 1 THR A 137 38.51 -143.04 REMARK 500 1 TYR A 140 90.96 56.95 REMARK 500 1 HIS B 2 93.78 173.87 REMARK 500 1 VAL B 20 -14.49 -45.98 REMARK 500 1 GLU B 22 -33.88 -155.79 REMARK 500 1 TYR B 35 76.90 -150.40 REMARK 500 1 THR B 38 37.38 -72.63 REMARK 500 1 ASP B 47 106.27 -46.70 REMARK 500 1 LEU B 48 21.56 -163.08 REMARK 500 1 HIS B 77 62.76 -171.07 REMARK 500 1 ASN B 80 112.00 -170.62 REMARK 500 1 ASN B 102 -46.96 -148.87 REMARK 500 1 ARG B 104 -19.97 -48.31 REMARK 500 1 PHE B 118 57.79 -144.30 REMARK 500 1 PHE B 122 33.66 -73.81 REMARK 500 1 LEU C 2 163.31 56.03 REMARK 500 1 SER C 3 -47.92 176.24 REMARK 500 1 PRO C 4 -170.28 -50.31 REMARK 500 1 ASP C 6 -29.18 -39.45 REMARK 500 1 ALA C 19 28.96 -66.29 REMARK 500 1 PHE C 36 65.96 21.56 REMARK 500 1 PHE C 43 79.88 55.08 REMARK 500 1 HIS C 45 35.13 90.89 REMARK 500 REMARK 500 THIS ENTRY HAS 1634 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 142 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 147 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM C 142 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM D 147 DBREF 2H35 A 1 141 UNP P69905 HBA_HUMAN 1 141 DBREF 2H35 B 1 146 UNP P68871 HBB_HUMAN 1 146 DBREF 2H35 C 1 141 UNP P69905 HBA_HUMAN 1 141 DBREF 2H35 D 1 146 UNP P68871 HBB_HUMAN 1 146 SEQRES 1 A 141 VAL LEU SER PRO ALA ASP LYS THR ASN VAL LYS ALA ALA SEQRES 2 A 141 TRP GLY LYS VAL GLY ALA HIS ALA GLY GLU TYR GLY ALA SEQRES 3 A 141 GLU ALA LEU GLU ARG MET PHE LEU SER PHE PRO THR THR SEQRES 4 A 141 LYS THR TYR PHE PRO HIS PHE ASP LEU SER HIS GLY SER SEQRES 5 A 141 ALA GLN VAL LYS GLY HIS GLY LYS LYS VAL ALA ASP ALA SEQRES 6 A 141 LEU THR ASN ALA VAL ALA HIS VAL ASP ASP MET PRO ASN SEQRES 7 A 141 ALA LEU SER ALA LEU SER ASP LEU HIS ALA HIS LYS LEU SEQRES 8 A 141 ARG VAL ASP PRO VAL ASN PHE LYS LEU LEU SER HIS CYS SEQRES 9 A 141 LEU LEU VAL THR LEU ALA ALA HIS LEU PRO ALA GLU PHE SEQRES 10 A 141 THR PRO ALA VAL HIS ALA SER LEU ASP LYS PHE LEU ALA SEQRES 11 A 141 SER VAL SER THR VAL LEU THR SER LYS TYR ARG SEQRES 1 B 146 VAL HIS LEU THR PRO GLU GLU LYS SER ALA VAL THR ALA SEQRES 2 B 146 LEU TRP GLY LYS VAL ASN VAL ASP GLU VAL GLY GLY GLU SEQRES 3 B 146 ALA LEU GLY ARG LEU LEU VAL VAL TYR PRO TRP THR GLN SEQRES 4 B 146 ARG PHE PHE GLU SER PHE GLY ASP LEU SER THR PRO ASP SEQRES 5 B 146 ALA VAL MET GLY ASN PRO LYS VAL LYS ALA HIS GLY LYS SEQRES 6 B 146 LYS VAL LEU GLY ALA PHE SER ASP GLY LEU ALA HIS LEU SEQRES 7 B 146 ASP ASN LEU LYS GLY THR PHE ALA THR LEU SER GLU LEU SEQRES 8 B 146 HIS CYS ASP LYS LEU HIS VAL ASP PRO GLU ASN PHE ARG SEQRES 9 B 146 LEU LEU GLY ASN VAL LEU VAL CYS VAL LEU ALA HIS HIS SEQRES 10 B 146 PHE GLY LYS GLU PHE THR PRO PRO VAL GLN ALA ALA TYR SEQRES 11 B 146 GLN LYS VAL VAL ALA GLY VAL ALA ASN ALA LEU ALA HIS SEQRES 12 B 146 LYS TYR HIS SEQRES 1 C 141 VAL LEU SER PRO ALA ASP LYS THR ASN VAL LYS ALA ALA SEQRES 2 C 141 TRP GLY LYS VAL GLY ALA HIS ALA GLY GLU TYR GLY ALA SEQRES 3 C 141 GLU ALA LEU GLU ARG MET PHE LEU SER PHE PRO THR THR SEQRES 4 C 141 LYS THR TYR PHE PRO HIS PHE ASP LEU SER HIS GLY SER SEQRES 5 C 141 ALA GLN VAL LYS GLY HIS GLY LYS LYS VAL ALA ASP ALA SEQRES 6 C 141 LEU THR ASN ALA VAL ALA HIS VAL ASP ASP MET PRO ASN SEQRES 7 C 141 ALA LEU SER ALA LEU SER ASP LEU HIS ALA HIS LYS LEU SEQRES 8 C 141 ARG VAL ASP PRO VAL ASN PHE LYS LEU LEU SER HIS CYS SEQRES 9 C 141 LEU LEU VAL THR LEU ALA ALA HIS LEU PRO ALA GLU PHE SEQRES 10 C 141 THR PRO ALA VAL HIS ALA SER LEU ASP LYS PHE LEU ALA SEQRES 11 C 141 SER VAL SER THR VAL LEU THR SER LYS TYR ARG SEQRES 1 D 146 VAL HIS LEU THR PRO GLU GLU LYS SER ALA VAL THR ALA SEQRES 2 D 146 LEU TRP GLY LYS VAL ASN VAL ASP GLU VAL GLY GLY GLU SEQRES 3 D 146 ALA LEU GLY ARG LEU LEU VAL VAL TYR PRO TRP THR GLN SEQRES 4 D 146 ARG PHE PHE GLU SER PHE GLY ASP LEU SER THR PRO ASP SEQRES 5 D 146 ALA VAL MET GLY ASN PRO LYS VAL LYS ALA HIS GLY LYS SEQRES 6 D 146 LYS VAL LEU GLY ALA PHE SER ASP GLY LEU ALA HIS LEU SEQRES 7 D 146 ASP ASN LEU LYS GLY THR PHE ALA THR LEU SER GLU LEU SEQRES 8 D 146 HIS CYS ASP LYS LEU HIS VAL ASP PRO GLU ASN PHE ARG SEQRES 9 D 146 LEU LEU GLY ASN VAL LEU VAL CYS VAL LEU ALA HIS HIS SEQRES 10 D 146 PHE GLY LYS GLU PHE THR PRO PRO VAL GLN ALA ALA TYR SEQRES 11 D 146 GLN LYS VAL VAL ALA GLY VAL ALA ASN ALA LEU ALA HIS SEQRES 12 D 146 LYS TYR HIS HET HEM A 142 73 HET HEM B 147 73 HET HEM C 142 73 HET HEM D 147 73 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 5 HEM 4(C34 H32 FE N4 O4) HELIX 1 1 ALA A 5 GLY A 18 1 14 HELIX 2 2 HIS A 20 LEU A 34 1 15 HELIX 3 3 THR A 38 PHE A 43 1 6 HELIX 4 4 SER A 52 ALA A 71 1 20 HELIX 5 5 ASP A 75 LEU A 80 1 6 HELIX 6 6 LEU A 80 ALA A 88 1 9 HELIX 7 7 ASP A 94 VAL A 96 5 3 HELIX 8 8 ASN A 97 ALA A 111 1 15 HELIX 9 9 ALA A 120 PHE A 128 1 9 HELIX 10 10 PHE A 128 THR A 137 1 10 HELIX 11 11 THR B 4 VAL B 18 1 15 HELIX 12 12 GLU B 22 TYR B 35 1 14 HELIX 13 13 THR B 50 GLY B 56 1 7 HELIX 14 14 ASN B 57 ALA B 76 1 20 HELIX 15 15 ASN B 80 ASP B 94 1 15 HELIX 16 16 ASN B 102 PHE B 118 1 17 HELIX 17 17 GLY B 119 PHE B 122 5 4 HELIX 18 18 THR B 123 LYS B 144 1 22 HELIX 19 19 ALA C 5 GLY C 18 1 14 HELIX 20 20 HIS C 20 LEU C 34 1 15 HELIX 21 21 THR C 38 PHE C 43 1 6 HELIX 22 22 SER C 52 ALA C 71 1 20 HELIX 23 23 ASP C 75 LEU C 80 1 6 HELIX 24 24 LEU C 80 ALA C 88 1 9 HELIX 25 25 ASP C 94 VAL C 96 5 3 HELIX 26 26 ASN C 97 ALA C 111 1 15 HELIX 27 27 ALA C 120 PHE C 128 1 9 HELIX 28 28 PHE C 128 THR C 137 1 10 HELIX 29 29 THR D 4 VAL D 18 1 15 HELIX 30 30 GLU D 22 TYR D 35 1 14 HELIX 31 31 THR D 50 GLY D 56 1 7 HELIX 32 32 ASN D 57 ALA D 76 1 20 HELIX 33 33 ASN D 80 ASP D 94 1 15 HELIX 34 34 ASN D 102 PHE D 118 1 17 HELIX 35 35 GLY D 119 PHE D 122 5 4 HELIX 36 36 THR D 123 LYS D 144 1 22 SITE 1 AC1 9 HIS A 58 LYS A 61 VAL A 62 LEU A 86 SITE 2 AC1 9 HIS A 87 PHE A 98 LEU A 101 LEU A 129 SITE 3 AC1 9 VAL A 132 SITE 1 AC2 8 PHE B 42 HIS B 63 LYS B 66 VAL B 67 SITE 2 AC2 8 PHE B 71 HIS B 92 PHE B 103 LEU B 106 SITE 1 AC3 9 HIS C 58 LYS C 61 VAL C 62 LEU C 86 SITE 2 AC3 9 HIS C 87 PHE C 98 LEU C 101 LEU C 129 SITE 3 AC3 9 VAL C 132 SITE 1 AC4 8 PHE D 42 HIS D 63 LYS D 66 VAL D 67 SITE 2 AC4 8 PHE D 71 HIS D 92 PHE D 103 LEU D 106 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1