HEADER TRANSFERASE 22-MAY-06 2H39 TITLE CRYSTAL STRUCTURE OF AN ADP-GLUCOSE PHOSPHORYLASE FROM ARABIDOPSIS TITLE 2 THALIANA WITH BOUND ADP-GLUCOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE GALACTOSE-1-PHOSPHATE URIDYL TRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GAL-1-P URIDYLYLTRANSFERASE, UDP-GLUCOSE-HEXOSE-1-PHOSPHATE COMPND 5 URIDYLYLTRANSFERASE; COMPND 6 EC: 2.7.7.12; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AT5G18200; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL834(DE3) P(RARE); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PVP-16 KEYWDS AT5G18200, ADP-GLUCOSE, GALT-LIKE, STRUCTURAL GENOMICS FUNCTIONAL KEYWDS 2 FOLLOW-UP STUDY, PROTEIN STRUCTURE INITIATIVE, PSI, CENTER FOR KEYWDS 3 EUKARYOTIC STRUCTURAL GENOMICS, CESG, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.G.MCCOY,G.E.WESENBERG,G.N.PHILLIPS JR.,E.BITTO,C.A.BINGMAN,CENTER AUTHOR 2 FOR EUKARYOTIC STRUCTURAL GENOMICS (CESG) REVDAT 5 30-AUG-23 2H39 1 REMARK REVDAT 4 20-OCT-21 2H39 1 REMARK SEQADV LINK REVDAT 3 25-APR-18 2H39 1 REMARK REVDAT 2 24-FEB-09 2H39 1 VERSN REVDAT 1 13-JUN-06 2H39 0 SPRSDE 13-JUN-06 2H39 2GDK JRNL AUTH J.G.MCCOY,G.E.WESENBERG,G.N.PHILLIPS JR.,E.BITTO,C.A.BINGMAN JRNL TITL CRYSTAL STRUCTURE OF AN ADP-GLUCOSE PHOSPHORYLASE FROM JRNL TITL 2 ARABIDOPSIS THALIANA WITH BOUND ADP-GLUCOSE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.G.MCCOY,A.ARABSHAHI,E.BITTO,C.A.BINGMAN,F.J.RUZICKA, REMARK 1 AUTH 2 P.A.FREY,G.N.PHILLIPS JR. REMARK 1 TITL STRUCTURE AND MECHANISM OF AN ADP-GLUCOSE PHOSPHORYLASE FROM REMARK 1 TITL 2 ARABIDOPSIS THALIANA REMARK 1 REF BIOCHEMISTRY V. 45 3154 2006 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 16519510 REMARK 1 DOI 10.1021/BI052232M REMARK 2 REMARK 2 RESOLUTION. 2.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 32302 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.074 REMARK 3 FREE R VALUE TEST SET COUNT : 1639 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.23 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.29 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2225 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 117 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4904 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 82 REMARK 3 SOLVENT ATOMS : 371 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03100 REMARK 3 B22 (A**2) : -0.03100 REMARK 3 B33 (A**2) : 0.00100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.304 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.231 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.157 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.285 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.896 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5128 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6975 ; 1.664 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 615 ; 6.730 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 223 ;37.761 ;24.081 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 829 ;14.842 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;25.756 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 773 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3858 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2511 ; 0.201 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3447 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 411 ; 0.162 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.178 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 23 ; 0.287 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.188 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3212 ; 1.516 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5082 ; 2.730 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2189 ; 3.722 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1893 ; 2.784 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2H39 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000037874. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-SEP-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRADED MULTILAYER REMARK 200 OPTICS : MONTEL OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER PROTEUM-R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SAINT REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32389 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.230 REMARK 200 RESOLUTION RANGE LOW (A) : 47.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.78 REMARK 200 R MERGE (I) : 0.19120 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.34 REMARK 200 R MERGE FOR SHELL (I) : 0.67560 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.920 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY: 1Z84 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MG/ML PROTEIN, 20% PEG 2000, 0.2M REMARK 280 SODIUM CHLORIDE, 0.10M MES-ACETATE, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.65900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.25200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.72700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.25200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.65900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.72700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS A DIMER. THERE IS 1 BIOLOGICAL UNIT IN REMARK 300 THE ASYMMETRIC UNIT (CHAINS A & B). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 PRO A 4 REMARK 465 SER A 5 REMARK 465 HIS A 6 REMARK 465 ALA A 7 REMARK 465 SER A 8 REMARK 465 ASP A 9 REMARK 465 ARG A 10 REMARK 465 GLY A 11 REMARK 465 GLY A 12 REMARK 465 GLY A 13 REMARK 465 ASP A 14 REMARK 465 GLY A 15 REMARK 465 ASP A 16 REMARK 465 SER A 17 REMARK 465 VAL A 18 REMARK 465 GLU A 19 REMARK 465 ASN A 20 REMARK 465 GLN A 21 REMARK 465 LYS A 49 REMARK 465 SER A 50 REMARK 465 LYS A 51 REMARK 465 SER A 52 REMARK 465 PRO A 53 REMARK 465 GLN A 54 REMARK 465 ASN A 55 REMARK 465 PRO A 56 REMARK 465 ASN A 57 REMARK 465 PRO A 58 REMARK 465 LYS A 59 REMARK 465 PRO A 60 REMARK 465 SER A 61 REMARK 465 THR A 108 REMARK 465 GLN A 109 REMARK 465 PRO A 110 REMARK 465 GLU A 111 REMARK 465 THR A 112 REMARK 465 GLY A 113 REMARK 465 THR A 114 REMARK 465 SER A 115 REMARK 465 THR A 351 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 SER B 3 REMARK 465 PRO B 4 REMARK 465 SER B 5 REMARK 465 HIS B 6 REMARK 465 ALA B 7 REMARK 465 SER B 8 REMARK 465 ASP B 9 REMARK 465 ARG B 10 REMARK 465 GLY B 11 REMARK 465 GLY B 12 REMARK 465 GLY B 13 REMARK 465 ASP B 14 REMARK 465 GLY B 15 REMARK 465 ASP B 16 REMARK 465 SER B 17 REMARK 465 VAL B 18 REMARK 465 GLU B 19 REMARK 465 ASN B 20 REMARK 465 LYS B 49 REMARK 465 SER B 50 REMARK 465 LYS B 51 REMARK 465 SER B 52 REMARK 465 PRO B 53 REMARK 465 GLN B 54 REMARK 465 ASN B 55 REMARK 465 PRO B 56 REMARK 465 ASN B 57 REMARK 465 PRO B 58 REMARK 465 LYS B 59 REMARK 465 GLN B 109 REMARK 465 PRO B 110 REMARK 465 GLU B 111 REMARK 465 THR B 112 REMARK 465 GLY B 113 REMARK 465 THR B 114 REMARK 465 SER B 115 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 67 O HOH A 549 2.16 REMARK 500 O MET B 182 O HOH B 585 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 41 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 41 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG B 33 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG B 33 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ASP B 147 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 96 76.95 -113.37 REMARK 500 ILE A 228 -61.23 -97.35 REMARK 500 SER A 231 -165.78 -121.59 REMARK 500 LEU A 262 134.58 -37.14 REMARK 500 SER B 38 88.45 -154.74 REMARK 500 HIS B 83 6.95 53.54 REMARK 500 TYR B 96 73.33 -119.11 REMARK 500 SER B 231 -165.15 -121.20 REMARK 500 PHE B 246 17.91 59.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 352 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 63 SG REMARK 620 2 CYS A 66 SG 121.2 REMARK 620 3 HIS A 133 ND1 107.0 114.7 REMARK 620 4 HIS A 184 ND1 109.8 103.9 97.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 353 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 216 SG REMARK 620 2 CYS A 219 SG 118.8 REMARK 620 3 HIS A 255 ND1 108.5 107.6 REMARK 620 4 HIS A 310 ND1 110.0 107.5 103.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 352 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 63 SG REMARK 620 2 CYS B 66 SG 125.1 REMARK 620 3 HIS B 133 ND1 104.0 108.0 REMARK 620 4 HIS B 184 ND1 105.6 104.4 109.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 353 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 216 SG REMARK 620 2 CYS B 219 SG 118.5 REMARK 620 3 HIS B 255 ND1 108.9 104.7 REMARK 620 4 HIS B 310 ND1 114.5 105.6 103.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 352 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 353 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 352 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 353 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADQ A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADQ B 507 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GO.23169 RELATED DB: TARGETDB DBREF 2H39 A 1 351 UNP Q9FK51 GALT_ARATH 1 351 DBREF 2H39 B 1 351 UNP Q9FK51 GALT_ARATH 1 351 SEQADV 2H39 GLY A 186 UNP Q9FK51 HIS 186 ENGINEERED MUTATION SEQADV 2H39 GLY B 186 UNP Q9FK51 HIS 186 ENGINEERED MUTATION SEQRES 1 A 351 MET THR SER PRO SER HIS ALA SER ASP ARG GLY GLY GLY SEQRES 2 A 351 ASP GLY ASP SER VAL GLU ASN GLN SER PRO GLU LEU ARG SEQRES 3 A 351 LYS ASP PRO VAL THR ASN ARG TRP VAL ILE PHE SER PRO SEQRES 4 A 351 ALA ARG ALA LYS ARG PRO THR ASP PHE LYS SER LYS SER SEQRES 5 A 351 PRO GLN ASN PRO ASN PRO LYS PRO SER SER CYS PRO PHE SEQRES 6 A 351 CYS ILE GLY ARG GLU GLN GLU CYS ALA PRO GLU LEU PHE SEQRES 7 A 351 ARG VAL PRO ASP HIS ASP PRO ASN TRP LYS LEU ARG VAL SEQRES 8 A 351 ILE GLU ASN LEU TYR PRO ALA LEU SER ARG ASN LEU GLU SEQRES 9 A 351 THR GLN SER THR GLN PRO GLU THR GLY THR SER ARG THR SEQRES 10 A 351 ILE VAL GLY PHE GLY PHE HIS ASP VAL VAL ILE GLU SER SEQRES 11 A 351 PRO VAL HIS SER ILE GLN LEU SER ASP ILE ASP PRO VAL SEQRES 12 A 351 GLY ILE GLY ASP ILE LEU ILE ALA TYR LYS LYS ARG ILE SEQRES 13 A 351 ASN GLN ILE ALA GLN HIS ASP SER ILE ASN TYR ILE GLN SEQRES 14 A 351 VAL PHE LYS ASN GLN GLY ALA SER ALA GLY ALA SER MET SEQRES 15 A 351 SER HIS SER GLY SER GLN MET MET ALA LEU PRO VAL VAL SEQRES 16 A 351 PRO PRO THR VAL SER SER ARG LEU ASP GLY THR LYS ASP SEQRES 17 A 351 TYR PHE GLU GLU THR GLY LYS CYS CYS LEU CYS GLU ALA SEQRES 18 A 351 LYS SER LYS HIS PHE VAL ILE ASP GLU SER SER HIS PHE SEQRES 19 A 351 VAL SER VAL ALA PRO PHE ALA ALA THR TYR PRO PHE GLU SEQRES 20 A 351 ILE TRP ILE ILE PRO LYS ASP HIS SER SER HIS PHE HIS SEQRES 21 A 351 HIS LEU ASP ASP VAL LYS ALA VAL ASP LEU GLY GLY LEU SEQRES 22 A 351 LEU LYS LEU MET LEU GLN LYS ILE ALA LYS GLN LEU ASN SEQRES 23 A 351 ASP PRO PRO TYR ASN TYR MET ILE HIS THR SER PRO LEU SEQRES 24 A 351 LYS VAL THR GLU SER GLN LEU PRO TYR THR HIS TRP PHE SEQRES 25 A 351 LEU GLN ILE VAL PRO GLN LEU SER GLY VAL GLY GLY PHE SEQRES 26 A 351 GLU ILE GLY THR GLY CYS TYR ILE ASN PRO VAL PHE PRO SEQRES 27 A 351 GLU ASP VAL ALA LYS VAL MET ARG GLU VAL SER LEU THR SEQRES 1 B 351 MET THR SER PRO SER HIS ALA SER ASP ARG GLY GLY GLY SEQRES 2 B 351 ASP GLY ASP SER VAL GLU ASN GLN SER PRO GLU LEU ARG SEQRES 3 B 351 LYS ASP PRO VAL THR ASN ARG TRP VAL ILE PHE SER PRO SEQRES 4 B 351 ALA ARG ALA LYS ARG PRO THR ASP PHE LYS SER LYS SER SEQRES 5 B 351 PRO GLN ASN PRO ASN PRO LYS PRO SER SER CYS PRO PHE SEQRES 6 B 351 CYS ILE GLY ARG GLU GLN GLU CYS ALA PRO GLU LEU PHE SEQRES 7 B 351 ARG VAL PRO ASP HIS ASP PRO ASN TRP LYS LEU ARG VAL SEQRES 8 B 351 ILE GLU ASN LEU TYR PRO ALA LEU SER ARG ASN LEU GLU SEQRES 9 B 351 THR GLN SER THR GLN PRO GLU THR GLY THR SER ARG THR SEQRES 10 B 351 ILE VAL GLY PHE GLY PHE HIS ASP VAL VAL ILE GLU SER SEQRES 11 B 351 PRO VAL HIS SER ILE GLN LEU SER ASP ILE ASP PRO VAL SEQRES 12 B 351 GLY ILE GLY ASP ILE LEU ILE ALA TYR LYS LYS ARG ILE SEQRES 13 B 351 ASN GLN ILE ALA GLN HIS ASP SER ILE ASN TYR ILE GLN SEQRES 14 B 351 VAL PHE LYS ASN GLN GLY ALA SER ALA GLY ALA SER MET SEQRES 15 B 351 SER HIS SER GLY SER GLN MET MET ALA LEU PRO VAL VAL SEQRES 16 B 351 PRO PRO THR VAL SER SER ARG LEU ASP GLY THR LYS ASP SEQRES 17 B 351 TYR PHE GLU GLU THR GLY LYS CYS CYS LEU CYS GLU ALA SEQRES 18 B 351 LYS SER LYS HIS PHE VAL ILE ASP GLU SER SER HIS PHE SEQRES 19 B 351 VAL SER VAL ALA PRO PHE ALA ALA THR TYR PRO PHE GLU SEQRES 20 B 351 ILE TRP ILE ILE PRO LYS ASP HIS SER SER HIS PHE HIS SEQRES 21 B 351 HIS LEU ASP ASP VAL LYS ALA VAL ASP LEU GLY GLY LEU SEQRES 22 B 351 LEU LYS LEU MET LEU GLN LYS ILE ALA LYS GLN LEU ASN SEQRES 23 B 351 ASP PRO PRO TYR ASN TYR MET ILE HIS THR SER PRO LEU SEQRES 24 B 351 LYS VAL THR GLU SER GLN LEU PRO TYR THR HIS TRP PHE SEQRES 25 B 351 LEU GLN ILE VAL PRO GLN LEU SER GLY VAL GLY GLY PHE SEQRES 26 B 351 GLU ILE GLY THR GLY CYS TYR ILE ASN PRO VAL PHE PRO SEQRES 27 B 351 GLU ASP VAL ALA LYS VAL MET ARG GLU VAL SER LEU THR HET ZN A 352 1 HET ZN A 353 1 HET CL A 402 1 HET ADQ A 506 38 HET ZN B 352 1 HET ZN B 353 1 HET CL B 401 1 HET ADQ B 507 38 HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM ADQ ADENOSINE-5'-DIPHOSPHATE-GLUCOSE HETSYN ADQ ADENOSINE-5'-MONOPHOSPHATE GLUCOPYRANOSYL-MONOPHOSPHATE HETSYN 2 ADQ ESTER FORMUL 3 ZN 4(ZN 2+) FORMUL 5 CL 2(CL 1-) FORMUL 6 ADQ 2(C16 H25 N5 O15 P2) FORMUL 11 HOH *371(H2 O) HELIX 1 1 PRO A 39 ARG A 44 5 6 HELIX 2 2 ARG A 69 CYS A 73 5 5 HELIX 3 3 GLN A 136 ILE A 140 5 5 HELIX 4 4 ASP A 141 ALA A 160 1 20 HELIX 5 5 GLY A 175 GLY A 179 5 5 HELIX 6 6 PRO A 196 GLY A 214 1 19 HELIX 7 7 GLU A 220 HIS A 225 1 6 HELIX 8 8 HIS A 258 LEU A 262 5 5 HELIX 9 9 ASP A 263 LEU A 285 1 23 HELIX 10 10 THR A 302 THR A 309 5 8 HELIX 11 11 GLY A 323 GLY A 330 1 8 HELIX 12 12 PHE A 337 GLU A 347 1 11 HELIX 13 13 PRO B 39 ARG B 44 5 6 HELIX 14 14 ARG B 69 CYS B 73 5 5 HELIX 15 15 SER B 100 ASN B 102 5 3 HELIX 16 16 LEU B 103 THR B 108 1 6 HELIX 17 17 GLN B 136 ILE B 140 5 5 HELIX 18 18 ASP B 141 ALA B 160 1 20 HELIX 19 19 GLY B 175 GLY B 179 5 5 HELIX 20 20 PRO B 196 GLY B 214 1 19 HELIX 21 21 GLU B 220 HIS B 225 1 6 HELIX 22 22 HIS B 258 LEU B 262 5 5 HELIX 23 23 ASP B 263 LEU B 285 1 23 HELIX 24 24 THR B 302 THR B 309 5 8 HELIX 25 25 GLY B 323 GLY B 330 1 8 HELIX 26 26 PHE B 337 GLU B 347 1 11 SHEET 1 A 4 ILE A 333 ASN A 334 0 SHEET 2 A 4 ARG A 33 PHE A 37 1 N ILE A 36 O ASN A 334 SHEET 3 A 4 GLU A 24 ASP A 28 -1 N GLU A 24 O PHE A 37 SHEET 4 A 4 THR B 117 VAL B 119 -1 O ILE B 118 N LEU A 25 SHEET 1 B10 GLU A 76 VAL A 80 0 SHEET 2 B10 LEU A 89 GLU A 93 -1 O VAL A 91 N LEU A 77 SHEET 3 B10 PHE A 123 ILE A 128 -1 O VAL A 126 N ILE A 92 SHEET 4 B10 GLY A 186 LEU A 192 -1 O SER A 187 N VAL A 127 SHEET 5 B10 TYR A 167 GLN A 174 -1 N GLN A 169 O MET A 190 SHEET 6 B10 TYR A 290 HIS A 295 -1 O ILE A 294 N VAL A 170 SHEET 7 B10 PHE A 312 PRO A 317 -1 O VAL A 316 N ASN A 291 SHEET 8 B10 ILE A 248 PRO A 252 -1 N ILE A 250 O LEU A 313 SHEET 9 B10 PHE A 234 ALA A 238 -1 N VAL A 235 O ILE A 251 SHEET 10 B10 PHE A 226 GLU A 230 -1 N ASP A 229 O SER A 236 SHEET 1 C 4 THR A 117 VAL A 119 0 SHEET 2 C 4 GLU B 24 ASP B 28 -1 O LEU B 25 N ILE A 118 SHEET 3 C 4 ARG B 33 PHE B 37 -1 O PHE B 37 N GLU B 24 SHEET 4 C 4 ILE B 333 ASN B 334 1 O ASN B 334 N ILE B 36 SHEET 1 D10 GLU B 76 VAL B 80 0 SHEET 2 D10 LEU B 89 GLU B 93 -1 O VAL B 91 N LEU B 77 SHEET 3 D10 PHE B 123 ILE B 128 -1 O VAL B 126 N ILE B 92 SHEET 4 D10 GLY B 186 LEU B 192 -1 O SER B 187 N VAL B 127 SHEET 5 D10 TYR B 167 GLN B 174 -1 N PHE B 171 O GLN B 188 SHEET 6 D10 TYR B 290 HIS B 295 -1 O TYR B 290 N GLN B 174 SHEET 7 D10 PHE B 312 PRO B 317 -1 O VAL B 316 N ASN B 291 SHEET 8 D10 ILE B 248 PRO B 252 -1 N ILE B 250 O LEU B 313 SHEET 9 D10 PHE B 234 ALA B 238 -1 N VAL B 235 O ILE B 251 SHEET 10 D10 PHE B 226 GLU B 230 -1 N ASP B 229 O SER B 236 LINK SG CYS A 63 ZN ZN A 352 1555 1555 2.41 LINK SG CYS A 66 ZN ZN A 352 1555 1555 2.50 LINK ND1 HIS A 133 ZN ZN A 352 1555 1555 1.88 LINK ND1 HIS A 184 ZN ZN A 352 1555 1555 2.17 LINK SG CYS A 216 ZN ZN A 353 1555 1555 2.28 LINK SG CYS A 219 ZN ZN A 353 1555 1555 2.41 LINK ND1 HIS A 255 ZN ZN A 353 1555 1555 2.06 LINK ND1 HIS A 310 ZN ZN A 353 1555 1555 2.07 LINK SG CYS B 63 ZN ZN B 352 1555 1555 2.37 LINK SG CYS B 66 ZN ZN B 352 1555 1555 2.48 LINK ND1 HIS B 133 ZN ZN B 352 1555 1555 2.08 LINK ND1 HIS B 184 ZN ZN B 352 1555 1555 2.12 LINK SG CYS B 216 ZN ZN B 353 1555 1555 2.23 LINK SG CYS B 219 ZN ZN B 353 1555 1555 2.31 LINK ND1 HIS B 255 ZN ZN B 353 1555 1555 2.07 LINK ND1 HIS B 310 ZN ZN B 353 1555 1555 2.12 CISPEP 1 VAL A 80 PRO A 81 0 -3.67 CISPEP 2 VAL B 80 PRO B 81 0 -4.90 SITE 1 AC1 4 CYS A 63 CYS A 66 HIS A 133 HIS A 184 SITE 1 AC2 4 CYS A 216 CYS A 219 HIS A 255 HIS A 310 SITE 1 AC3 4 CYS B 63 CYS B 66 HIS B 133 HIS B 184 SITE 1 AC4 4 CYS B 216 CYS B 219 HIS B 255 HIS B 310 SITE 1 AC5 4 PHE B 259 HIS B 260 THR B 296 HOH B 611 SITE 1 AC6 3 PHE A 259 HIS A 260 THR A 296 SITE 1 AC7 30 PHE A 65 GLU A 72 CYS A 73 ALA A 74 SITE 2 AC7 30 ILE A 92 GLU A 93 ASN A 94 LEU A 95 SITE 3 AC7 30 TYR A 96 PHE A 171 ASN A 173 GLY A 179 SITE 4 AC7 30 ALA A 180 SER A 181 MET A 182 GLN A 188 SITE 5 AC7 30 HOH A 559 HOH A 614 HOH A 615 HOH A 687 SITE 6 AC7 30 HOH A 690 ARG B 41 ARG B 44 GLY B 321 SITE 7 AC7 30 GLY B 323 GLY B 324 PHE B 325 GLU B 326 SITE 8 AC7 30 ILE B 333 HOH B 544 SITE 1 AC8 26 ARG A 41 ARG A 44 GLY A 321 GLY A 323 SITE 2 AC8 26 GLY A 324 PHE A 325 GLU A 326 PHE B 65 SITE 3 AC8 26 GLU B 72 CYS B 73 ALA B 74 ILE B 92 SITE 4 AC8 26 GLU B 93 ASN B 94 LEU B 95 TYR B 96 SITE 5 AC8 26 ASN B 173 GLY B 179 ALA B 180 SER B 181 SITE 6 AC8 26 MET B 182 GLN B 188 HOH B 537 HOH B 546 SITE 7 AC8 26 HOH B 629 HOH B 672 CRYST1 61.318 95.454 110.504 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016310 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010480 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009050 0.00000