data_2H3Q # _entry.id 2H3Q # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2H3Q RCSB RCSB037891 WWPDB D_1000037891 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2h3f . unspecified PDB 2h3i . unspecified PDB 2h3v . unspecified PDB 2h3z . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2H3Q _pdbx_database_status.recvd_initial_deposition_date 2006-05-22 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Saad, J.S.' 1 'Miller, J.' 2 'Tai, J.' 3 'Kim, A.' 4 'Ghanam, R.H.' 5 'Summers, M.F.' 6 # _citation.id primary _citation.title 'Structural basis for targeting HIV-1 Gag proteins to the plasma membrane for virus assembly.' _citation.journal_abbrev Proc.Natl.Acad.Sci.Usa _citation.journal_volume 103 _citation.page_first 11364 _citation.page_last 11369 _citation.year 2006 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16840558 _citation.pdbx_database_id_DOI 10.1073/pnas.0602818103 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Saad, J.S.' 1 primary 'Miller, J.' 2 primary 'Tai, J.' 3 primary 'Kim, A.' 4 primary 'Ghanam, R.H.' 5 primary 'Summers, M.F.' 6 # _cell.entry_id 2H3Q _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2H3Q _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Gag polyprotein' 14734.616 1 ? ? 'residues 2-132' ? 2 non-polymer syn 'MYRISTIC ACID' 228.371 1 ? ? ? ? 3 non-polymer syn ;(2R)-3-{[(R)-HYDROXY{[(1R,2R,3S,4R,5R,6S)-2,3,6-TRIHYDROXY-4,5-BIS(PHOSPHONOOXY)CYCLOHEXYL]OXY}PHOSPHORYL]OXY}PROPANE-1,2-DIYL DIBUTANOATE ; 634.354 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GARASVLSGGELDKWEKIRLRPGGKKQYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNT IAVLYCVHQRIDVKDTKEALDKIEEEQNKSKKKAQQAAADTGNNSQVSQNY ; _entity_poly.pdbx_seq_one_letter_code_can ;GARASVLSGGELDKWEKIRLRPGGKKQYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNT IAVLYCVHQRIDVKDTKEALDKIEEEQNKSKKKAQQAAADTGNNSQVSQNY ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 ARG n 1 4 ALA n 1 5 SER n 1 6 VAL n 1 7 LEU n 1 8 SER n 1 9 GLY n 1 10 GLY n 1 11 GLU n 1 12 LEU n 1 13 ASP n 1 14 LYS n 1 15 TRP n 1 16 GLU n 1 17 LYS n 1 18 ILE n 1 19 ARG n 1 20 LEU n 1 21 ARG n 1 22 PRO n 1 23 GLY n 1 24 GLY n 1 25 LYS n 1 26 LYS n 1 27 GLN n 1 28 TYR n 1 29 LYS n 1 30 LEU n 1 31 LYS n 1 32 HIS n 1 33 ILE n 1 34 VAL n 1 35 TRP n 1 36 ALA n 1 37 SER n 1 38 ARG n 1 39 GLU n 1 40 LEU n 1 41 GLU n 1 42 ARG n 1 43 PHE n 1 44 ALA n 1 45 VAL n 1 46 ASN n 1 47 PRO n 1 48 GLY n 1 49 LEU n 1 50 LEU n 1 51 GLU n 1 52 THR n 1 53 SER n 1 54 GLU n 1 55 GLY n 1 56 CYS n 1 57 ARG n 1 58 GLN n 1 59 ILE n 1 60 LEU n 1 61 GLY n 1 62 GLN n 1 63 LEU n 1 64 GLN n 1 65 PRO n 1 66 SER n 1 67 LEU n 1 68 GLN n 1 69 THR n 1 70 GLY n 1 71 SER n 1 72 GLU n 1 73 GLU n 1 74 LEU n 1 75 ARG n 1 76 SER n 1 77 LEU n 1 78 TYR n 1 79 ASN n 1 80 THR n 1 81 ILE n 1 82 ALA n 1 83 VAL n 1 84 LEU n 1 85 TYR n 1 86 CYS n 1 87 VAL n 1 88 HIS n 1 89 GLN n 1 90 ARG n 1 91 ILE n 1 92 ASP n 1 93 VAL n 1 94 LYS n 1 95 ASP n 1 96 THR n 1 97 LYS n 1 98 GLU n 1 99 ALA n 1 100 LEU n 1 101 ASP n 1 102 LYS n 1 103 ILE n 1 104 GLU n 1 105 GLU n 1 106 GLU n 1 107 GLN n 1 108 ASN n 1 109 LYS n 1 110 SER n 1 111 LYS n 1 112 LYS n 1 113 LYS n 1 114 ALA n 1 115 GLN n 1 116 GLN n 1 117 ALA n 1 118 ALA n 1 119 ALA n 1 120 ASP n 1 121 THR n 1 122 GLY n 1 123 ASN n 1 124 ASN n 1 125 SER n 1 126 GLN n 1 127 VAL n 1 128 SER n 1 129 GLN n 1 130 ASN n 1 131 TYR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Lentivirus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Human immunodeficiency virus 1' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11676 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code POL_HV1N5 _struct_ref.pdbx_db_accession P12497 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2H3Q _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 131 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P12497 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 131 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 132 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MYR non-polymer . 'MYRISTIC ACID' ? 'C14 H28 O2' 228.371 PBU non-polymer . ;(2R)-3-{[(R)-HYDROXY{[(1R,2R,3S,4R,5R,6S)-2,3,6-TRIHYDROXY-4,5-BIS(PHOSPHONOOXY)CYCLOHEXYL]OXY}PHOSPHORYL]OXY}PROPANE-1,2-DIYL DIBUTANOATE ; 'di-butanoyl L-alpha-phosphatidyl-D-myo-inositol 4,5-bisphosphate; di-C4-PIP2' 'C17 H33 O19 P3' 634.354 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 308 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 5.5 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '50mM phosphate buffer, 5mM DTT, 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 DRX Bruker 800 ? 2 DMX Bruker 600 ? # _pdbx_nmr_ensemble.entry_id 2H3Q _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2H3Q _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'fewest violations' # _pdbx_nmr_software.classification refinement _pdbx_nmr_software.name CYANA _pdbx_nmr_software.version ? _pdbx_nmr_software.authors 'P.GUNTERT ET AL.' _pdbx_nmr_software.ordinal 1 # _exptl.entry_id 2H3Q _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 2H3Q _struct.title 'Solution structure of HIV-1 myrMA bound to di-C4-phosphatidylinositol-(4,5)-bisphosphate' _struct.pdbx_descriptor 'Gag polyprotein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2H3Q _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text 'HIV-1 myristoylated Matrix protein bound to di-C4-PI(4, 5)P2, VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 8 ? ILE A 18 ? SER A 9 ILE A 19 1 ? 11 HELX_P HELX_P2 2 LYS A 29 ? GLU A 41 ? LYS A 30 GLU A 42 1 ? 13 HELX_P HELX_P3 3 ARG A 42 ? ALA A 44 ? ARG A 43 ALA A 45 5 ? 3 HELX_P HELX_P4 4 ASN A 46 ? GLU A 51 ? ASN A 47 GLU A 52 5 ? 6 HELX_P HELX_P5 5 THR A 52 ? GLN A 64 ? THR A 53 GLN A 65 1 ? 13 HELX_P HELX_P6 6 SER A 66 ? GLY A 70 ? SER A 67 GLY A 71 5 ? 5 HELX_P HELX_P7 7 SER A 71 ? GLN A 89 ? SER A 72 GLN A 90 1 ? 19 HELX_P HELX_P8 8 ASP A 95 ? GLN A 107 ? ASP A 96 GLN A 108 1 ? 13 HELX_P HELX_P9 9 GLN A 107 ? LYS A 112 ? GLN A 108 LYS A 113 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_comp_id MYR _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_label_atom_id C1 _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id GLY _struct_conn.ptnr2_label_seq_id 1 _struct_conn.ptnr2_label_atom_id N _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id MYR _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id GLY _struct_conn.ptnr2_auth_seq_id 2 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.329 _struct_conn.pdbx_value_order ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE MYR A 1' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE PBU A 300' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 GLY A 1 ? GLY A 2 . ? 1_555 ? 2 AC1 2 ALA A 2 ? ALA A 3 . ? 1_555 ? 3 AC2 6 ARG A 21 ? ARG A 22 . ? 1_555 ? 4 AC2 6 LYS A 26 ? LYS A 27 . ? 1_555 ? 5 AC2 6 TRP A 35 ? TRP A 36 . ? 1_555 ? 6 AC2 6 ARG A 75 ? ARG A 76 . ? 1_555 ? 7 AC2 6 SER A 76 ? SER A 77 . ? 1_555 ? 8 AC2 6 THR A 80 ? THR A 81 . ? 1_555 ? # _database_PDB_matrix.entry_id 2H3Q _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2H3Q _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 2 2 GLY GLY A . n A 1 2 ALA 2 3 3 ALA ALA A . n A 1 3 ARG 3 4 4 ARG ARG A . n A 1 4 ALA 4 5 5 ALA ALA A . n A 1 5 SER 5 6 6 SER SER A . n A 1 6 VAL 6 7 7 VAL VAL A . n A 1 7 LEU 7 8 8 LEU LEU A . n A 1 8 SER 8 9 9 SER SER A . n A 1 9 GLY 9 10 10 GLY GLY A . n A 1 10 GLY 10 11 11 GLY GLY A . n A 1 11 GLU 11 12 12 GLU GLU A . n A 1 12 LEU 12 13 13 LEU LEU A . n A 1 13 ASP 13 14 14 ASP ASP A . n A 1 14 LYS 14 15 15 LYS LYS A . n A 1 15 TRP 15 16 16 TRP TRP A . n A 1 16 GLU 16 17 17 GLU GLU A . n A 1 17 LYS 17 18 18 LYS LYS A . n A 1 18 ILE 18 19 19 ILE ILE A . n A 1 19 ARG 19 20 20 ARG ARG A . n A 1 20 LEU 20 21 21 LEU LEU A . n A 1 21 ARG 21 22 22 ARG ARG A . n A 1 22 PRO 22 23 23 PRO PRO A . n A 1 23 GLY 23 24 24 GLY GLY A . n A 1 24 GLY 24 25 25 GLY GLY A . n A 1 25 LYS 25 26 26 LYS LYS A . n A 1 26 LYS 26 27 27 LYS LYS A . n A 1 27 GLN 27 28 28 GLN GLN A . n A 1 28 TYR 28 29 29 TYR TYR A . n A 1 29 LYS 29 30 30 LYS LYS A . n A 1 30 LEU 30 31 31 LEU LEU A . n A 1 31 LYS 31 32 32 LYS LYS A . n A 1 32 HIS 32 33 33 HIS HIS A . n A 1 33 ILE 33 34 34 ILE ILE A . n A 1 34 VAL 34 35 35 VAL VAL A . n A 1 35 TRP 35 36 36 TRP TRP A . n A 1 36 ALA 36 37 37 ALA ALA A . n A 1 37 SER 37 38 38 SER SER A . n A 1 38 ARG 38 39 39 ARG ARG A . n A 1 39 GLU 39 40 40 GLU GLU A . n A 1 40 LEU 40 41 41 LEU LEU A . n A 1 41 GLU 41 42 42 GLU GLU A . n A 1 42 ARG 42 43 43 ARG ARG A . n A 1 43 PHE 43 44 44 PHE PHE A . n A 1 44 ALA 44 45 45 ALA ALA A . n A 1 45 VAL 45 46 46 VAL VAL A . n A 1 46 ASN 46 47 47 ASN ASN A . n A 1 47 PRO 47 48 48 PRO PRO A . n A 1 48 GLY 48 49 49 GLY GLY A . n A 1 49 LEU 49 50 50 LEU LEU A . n A 1 50 LEU 50 51 51 LEU LEU A . n A 1 51 GLU 51 52 52 GLU GLU A . n A 1 52 THR 52 53 53 THR THR A . n A 1 53 SER 53 54 54 SER SER A . n A 1 54 GLU 54 55 55 GLU GLU A . n A 1 55 GLY 55 56 56 GLY GLY A . n A 1 56 CYS 56 57 57 CYS CYS A . n A 1 57 ARG 57 58 58 ARG ARG A . n A 1 58 GLN 58 59 59 GLN GLN A . n A 1 59 ILE 59 60 60 ILE ILE A . n A 1 60 LEU 60 61 61 LEU LEU A . n A 1 61 GLY 61 62 62 GLY GLY A . n A 1 62 GLN 62 63 63 GLN GLN A . n A 1 63 LEU 63 64 64 LEU LEU A . n A 1 64 GLN 64 65 65 GLN GLN A . n A 1 65 PRO 65 66 66 PRO PRO A . n A 1 66 SER 66 67 67 SER SER A . n A 1 67 LEU 67 68 68 LEU LEU A . n A 1 68 GLN 68 69 69 GLN GLN A . n A 1 69 THR 69 70 70 THR THR A . n A 1 70 GLY 70 71 71 GLY GLY A . n A 1 71 SER 71 72 72 SER SER A . n A 1 72 GLU 72 73 73 GLU GLU A . n A 1 73 GLU 73 74 74 GLU GLU A . n A 1 74 LEU 74 75 75 LEU LEU A . n A 1 75 ARG 75 76 76 ARG ARG A . n A 1 76 SER 76 77 77 SER SER A . n A 1 77 LEU 77 78 78 LEU LEU A . n A 1 78 TYR 78 79 79 TYR TYR A . n A 1 79 ASN 79 80 80 ASN ASN A . n A 1 80 THR 80 81 81 THR THR A . n A 1 81 ILE 81 82 82 ILE ILE A . n A 1 82 ALA 82 83 83 ALA ALA A . n A 1 83 VAL 83 84 84 VAL VAL A . n A 1 84 LEU 84 85 85 LEU LEU A . n A 1 85 TYR 85 86 86 TYR TYR A . n A 1 86 CYS 86 87 87 CYS CYS A . n A 1 87 VAL 87 88 88 VAL VAL A . n A 1 88 HIS 88 89 89 HIS HIS A . n A 1 89 GLN 89 90 90 GLN GLN A . n A 1 90 ARG 90 91 91 ARG ARG A . n A 1 91 ILE 91 92 92 ILE ILE A . n A 1 92 ASP 92 93 93 ASP ASP A . n A 1 93 VAL 93 94 94 VAL VAL A . n A 1 94 LYS 94 95 95 LYS LYS A . n A 1 95 ASP 95 96 96 ASP ASP A . n A 1 96 THR 96 97 97 THR THR A . n A 1 97 LYS 97 98 98 LYS LYS A . n A 1 98 GLU 98 99 99 GLU GLU A . n A 1 99 ALA 99 100 100 ALA ALA A . n A 1 100 LEU 100 101 101 LEU LEU A . n A 1 101 ASP 101 102 102 ASP ASP A . n A 1 102 LYS 102 103 103 LYS LYS A . n A 1 103 ILE 103 104 104 ILE ILE A . n A 1 104 GLU 104 105 105 GLU GLU A . n A 1 105 GLU 105 106 106 GLU GLU A . n A 1 106 GLU 106 107 107 GLU GLU A . n A 1 107 GLN 107 108 108 GLN GLN A . n A 1 108 ASN 108 109 109 ASN ASN A . n A 1 109 LYS 109 110 110 LYS LYS A . n A 1 110 SER 110 111 111 SER SER A . n A 1 111 LYS 111 112 112 LYS LYS A . n A 1 112 LYS 112 113 113 LYS LYS A . n A 1 113 LYS 113 114 114 LYS LYS A . n A 1 114 ALA 114 115 115 ALA ALA A . n A 1 115 GLN 115 116 116 GLN GLN A . n A 1 116 GLN 116 117 117 GLN GLN A . n A 1 117 ALA 117 118 118 ALA ALA A . n A 1 118 ALA 118 119 119 ALA ALA A . n A 1 119 ALA 119 120 120 ALA ALA A . n A 1 120 ASP 120 121 121 ASP ASP A . n A 1 121 THR 121 122 122 THR THR A . n A 1 122 GLY 122 123 123 GLY GLY A . n A 1 123 ASN 123 124 124 ASN ASN A . n A 1 124 ASN 124 125 125 ASN ASN A . n A 1 125 SER 125 126 126 SER SER A . n A 1 126 GLN 126 127 127 GLN GLN A . n A 1 127 VAL 127 128 128 VAL VAL A . n A 1 128 SER 128 129 129 SER SER A . n A 1 129 GLN 129 130 130 GLN GLN A . n A 1 130 ASN 130 131 131 ASN ASN A . n A 1 131 TYR 131 132 132 TYR TYR A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MYR 1 1 1 MYR MYR A . C 3 PBU 1 300 300 PBU PBU A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-07-25 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2014-01-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Non-polymer description' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 6 ? ? 58.14 -172.64 2 1 GLN A 28 ? ? -57.37 175.05 3 1 ALA A 115 ? ? -149.13 27.07 4 1 GLN A 116 ? ? -162.72 47.61 5 1 ALA A 119 ? ? -98.30 36.25 6 2 ALA A 3 ? ? -163.77 97.18 7 2 ALA A 5 ? ? -96.66 -70.70 8 2 SER A 6 ? ? -178.78 -67.24 9 2 GLN A 90 ? ? -98.35 -72.28 10 2 ARG A 91 ? ? -179.28 -35.17 11 2 ASP A 93 ? ? -119.83 75.44 12 2 ALA A 115 ? ? -76.25 -70.44 13 2 GLN A 116 ? ? -177.83 65.21 14 2 GLN A 127 ? ? 60.92 178.62 15 2 VAL A 128 ? ? 59.45 81.20 16 2 ASN A 131 ? ? 61.10 66.36 17 3 ALA A 3 ? ? -171.85 56.73 18 3 SER A 6 ? ? -174.17 -59.73 19 3 GLN A 90 ? ? -76.68 -72.95 20 3 ARG A 91 ? ? -179.27 -35.05 21 3 ASP A 93 ? ? -115.80 60.00 22 3 ALA A 115 ? ? -172.09 44.61 23 3 ASP A 121 ? ? -154.92 28.13 24 3 GLN A 127 ? ? -161.95 76.26 25 4 GLN A 28 ? ? -59.50 175.59 26 4 GLN A 90 ? ? -74.08 -71.32 27 4 ARG A 91 ? ? -179.28 -35.20 28 4 ASP A 93 ? ? -119.23 55.05 29 4 ALA A 115 ? ? -162.01 29.22 30 4 GLN A 116 ? ? -149.25 39.29 31 4 ALA A 118 ? ? -149.19 29.54 32 4 ALA A 119 ? ? -163.43 27.71 33 4 SER A 129 ? ? 59.67 96.56 34 4 GLN A 130 ? ? -115.11 51.68 35 5 ARG A 4 ? ? -165.68 80.91 36 5 SER A 6 ? ? -177.66 -74.25 37 5 GLN A 90 ? ? -94.95 -70.93 38 5 ARG A 91 ? ? -179.17 -35.28 39 5 ASP A 93 ? ? -113.29 67.03 40 5 LYS A 114 ? ? -98.90 30.82 41 5 GLN A 116 ? ? -88.28 -71.01 42 5 ALA A 118 ? ? -170.88 -43.52 43 5 ASN A 124 ? ? -102.87 66.61 44 6 ALA A 5 ? ? -69.93 88.35 45 6 LYS A 18 ? ? -95.58 32.60 46 6 LYS A 26 ? ? -142.51 49.12 47 6 ALA A 119 ? ? -96.91 30.02 48 6 THR A 122 ? ? -170.92 149.11 49 6 ASN A 124 ? ? -63.88 -173.64 50 6 GLN A 127 ? ? 57.77 88.09 51 6 SER A 129 ? ? 60.74 -170.71 52 6 GLN A 130 ? ? -172.00 48.66 53 7 ALA A 3 ? ? -171.16 39.79 54 7 ALA A 5 ? ? -178.27 -35.04 55 7 LYS A 27 ? ? -57.32 100.59 56 7 GLN A 90 ? ? -98.90 -71.48 57 7 ARG A 91 ? ? -179.33 -35.01 58 7 ASP A 93 ? ? -109.27 55.59 59 7 VAL A 94 ? ? -54.16 171.86 60 7 ALA A 119 ? ? -141.95 27.06 61 7 THR A 122 ? ? 51.35 -170.83 62 8 ALA A 3 ? ? 59.86 176.91 63 8 VAL A 7 ? ? -124.97 -67.67 64 8 SER A 9 ? ? -69.44 -171.38 65 8 ASP A 121 ? ? -96.04 52.26 66 8 ASN A 124 ? ? -174.58 77.91 67 8 VAL A 128 ? ? -175.95 136.20 68 9 ALA A 3 ? ? 52.11 85.78 69 9 SER A 6 ? ? 53.91 -171.74 70 9 VAL A 7 ? ? -94.76 -70.98 71 9 GLN A 116 ? ? -98.24 32.38 72 9 GLN A 117 ? ? -145.49 -50.39 73 9 ASP A 121 ? ? -146.29 34.63 74 9 GLN A 130 ? ? 62.82 102.04 75 10 SER A 6 ? ? 58.44 -178.06 76 10 VAL A 7 ? ? -94.35 -70.98 77 10 GLN A 28 ? ? -55.47 175.41 78 10 THR A 70 ? ? -96.10 30.80 79 10 GLN A 90 ? ? -74.07 -71.28 80 10 ARG A 91 ? ? -179.29 -35.09 81 10 ASP A 93 ? ? -117.76 57.52 82 10 GLN A 127 ? ? -102.35 67.75 83 10 VAL A 128 ? ? -124.00 -58.76 84 10 ASN A 131 ? ? 60.24 -175.59 85 11 ALA A 5 ? ? -53.49 -72.06 86 11 SER A 6 ? ? -164.55 -56.64 87 11 GLN A 28 ? ? -63.02 -178.79 88 11 GLN A 90 ? ? -77.83 -73.79 89 11 ARG A 91 ? ? -179.25 -35.05 90 11 ASP A 93 ? ? -112.24 59.37 91 11 LYS A 112 ? ? -128.14 -60.18 92 11 ALA A 120 ? ? -154.43 -44.34 93 11 ASN A 125 ? ? 62.00 -174.85 94 11 SER A 126 ? ? 62.03 -178.40 95 11 GLN A 127 ? ? 55.75 85.55 96 11 GLN A 130 ? ? 56.95 86.26 97 12 ALA A 5 ? ? 61.82 165.31 98 12 SER A 6 ? ? 58.02 -179.53 99 12 SER A 72 ? ? -57.41 176.43 100 12 GLN A 116 ? ? -176.18 33.89 101 12 ASN A 125 ? ? 59.02 -177.04 102 12 ASN A 131 ? ? 55.47 -175.59 103 13 ALA A 5 ? ? 57.76 -171.29 104 13 VAL A 7 ? ? -121.83 -69.54 105 13 LYS A 27 ? ? -54.90 101.21 106 13 LYS A 114 ? ? -96.94 32.51 107 13 ALA A 119 ? ? -92.19 49.55 108 13 ALA A 120 ? ? -144.74 39.53 109 13 ASP A 121 ? ? -123.89 -56.66 110 13 THR A 122 ? ? 51.40 -170.84 111 13 VAL A 128 ? ? -146.92 -57.85 112 13 SER A 129 ? ? -146.98 -47.98 113 13 GLN A 130 ? ? 59.18 78.38 114 14 ALA A 3 ? ? 56.79 -178.88 115 14 ARG A 4 ? ? -95.22 -62.59 116 14 VAL A 7 ? ? -109.16 -67.07 117 14 LYS A 18 ? ? -95.61 32.51 118 14 GLN A 90 ? ? -78.47 -73.97 119 14 ARG A 91 ? ? -179.32 -35.05 120 14 ASP A 93 ? ? -112.28 55.00 121 14 GLN A 116 ? ? -170.29 35.91 122 14 ASN A 125 ? ? -161.37 89.78 123 14 GLN A 127 ? ? -171.11 109.14 124 15 ALA A 5 ? ? -156.48 31.97 125 15 VAL A 7 ? ? -101.04 -69.75 126 15 LYS A 18 ? ? -95.62 32.60 127 15 LYS A 27 ? ? -51.93 107.05 128 15 ASP A 93 ? ? -110.33 79.15 129 15 VAL A 128 ? ? 51.76 71.69 130 15 GLN A 130 ? ? 57.69 84.51 131 16 ALA A 3 ? ? -154.18 -44.82 132 16 SER A 6 ? ? -172.48 105.40 133 16 GLN A 90 ? ? -75.66 -72.30 134 16 ARG A 91 ? ? -179.26 -35.12 135 16 ASP A 93 ? ? -116.41 54.88 136 16 LYS A 114 ? ? -93.73 -73.11 137 16 ALA A 119 ? ? -100.88 -168.88 138 16 ASP A 121 ? ? -135.70 -49.18 139 16 SER A 129 ? ? -179.03 125.11 140 16 ASN A 131 ? ? 62.86 165.93 141 17 ALA A 3 ? ? -168.60 93.67 142 17 ARG A 4 ? ? -153.11 -54.03 143 17 ALA A 5 ? ? -139.14 -41.87 144 17 SER A 72 ? ? -63.41 -176.25 145 17 GLN A 90 ? ? -93.58 -70.45 146 17 ARG A 91 ? ? -179.28 -36.60 147 17 ASP A 93 ? ? -116.88 54.78 148 17 LYS A 114 ? ? -158.29 28.32 149 17 ALA A 120 ? ? -169.96 30.88 150 17 ASP A 121 ? ? -175.68 40.49 151 17 GLN A 127 ? ? -104.31 68.59 152 18 ALA A 3 ? ? 60.47 -171.35 153 18 ARG A 4 ? ? 56.82 -176.93 154 18 ALA A 5 ? ? 61.10 -175.25 155 18 GLU A 74 ? ? -152.93 -42.01 156 18 GLN A 90 ? ? -95.26 -70.91 157 18 ARG A 91 ? ? -179.33 -35.71 158 18 ASP A 93 ? ? -115.38 54.63 159 18 ALA A 119 ? ? -96.32 45.01 160 18 ALA A 120 ? ? -169.69 44.88 161 19 ALA A 5 ? ? 62.59 169.53 162 19 SER A 6 ? ? 56.17 -171.06 163 19 VAL A 7 ? ? -94.64 -68.51 164 19 GLN A 28 ? ? -61.82 -172.86 165 19 THR A 70 ? ? -98.39 30.85 166 19 ALA A 115 ? ? -164.47 49.07 167 19 ALA A 119 ? ? -101.04 -168.99 168 19 GLN A 127 ? ? -105.46 78.40 169 19 VAL A 128 ? ? -107.34 41.07 170 20 ARG A 4 ? ? 56.95 82.79 171 20 ALA A 5 ? ? -161.10 -48.72 172 20 GLN A 90 ? ? -101.91 -73.12 173 20 ARG A 91 ? ? -179.34 -35.21 174 20 ASP A 93 ? ? -110.18 60.96 175 20 SER A 111 ? ? -157.68 34.63 176 20 LYS A 114 ? ? -165.35 30.63 177 20 ASN A 125 ? ? -139.28 -44.06 178 20 GLN A 127 ? ? -174.37 112.43 179 20 VAL A 128 ? ? 60.72 82.15 180 20 SER A 129 ? ? -122.07 -68.66 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MYRISTIC ACID' MYR 3 ;(2R)-3-{[(R)-HYDROXY{[(1R,2R,3S,4R,5R,6S)-2,3,6-TRIHYDROXY-4,5-BIS(PHOSPHONOOXY)CYCLOHEXYL]OXY}PHOSPHORYL]OXY}PROPANE-1,2-DIYL DIBUTANOATE ; PBU #