HEADER OXIDOREDUCTASE 27-MAY-06 2H5U TITLE CRYSTAL STRUCTURE OF LACCASE FROM CERRENA MAXIMA AT 1.9A RESOLUTION CAVEAT 2H5U MAN B 3 HAS WRONG CHIRALITY AT ATOM C1 MAN C 3 HAS WRONG CAVEAT 2 2H5U CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LACCASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.10.3.2 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRAMETES MAXIMA; SOURCE 3 ORGANISM_TAXID: 259368; SOURCE 4 STRAIN: 0275 (MONT)KRAISEL OF THE POLYPORACEAE FAMILY KEYWDS BLUE MULTI-COPPER ENZYME, LACCASE FROM CERRENA MAXIMA, PURIFICATION, KEYWDS 2 CRYSTALS, X-RAY ANALYSES, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.V.LYASHENKO,A.G.GABDOULKHAKOV,V.N.ZAITSEV,V.S.LAMZIN,P.F.LINDLEY, AUTHOR 2 I.BENTO,C.BETZEL,N.E.ZHUKHLISTOVA,Y.N.ZHUKOVA,A.M.MIKHAILOV REVDAT 4 29-JUL-20 2H5U 1 CAVEAT COMPND REMARK HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 13-JUL-11 2H5U 1 VERSN REVDAT 2 24-FEB-09 2H5U 1 VERSN REVDAT 1 29-MAY-07 2H5U 0 JRNL AUTH A.V.LYASHENKO,N.E.ZHUKHLISTOVA,A.G.GABDOULKHAKOV, JRNL AUTH 2 V.N.ZAITSEV,I.BENTO,V.S.LAMZIN,C.BETZEL,P.F.LINDLEY, JRNL AUTH 3 O.V.KOROLEVA,Y.N.ZHUKOVA,E.V.STEPANOVA,E.Y.MORGUNOVA, JRNL AUTH 4 W.VOELTER,K.SCHIRWITZ,V.I.TISHKOV,G.S.KACHALOVA, JRNL AUTH 5 E.A.CHERKASHYN,A.M.MIKHAILOV JRNL TITL PURIFICATION, CRYSTALLIZATION AND PRELIMINARY X-RAY STUDY OF JRNL TITL 2 THE FUNGAL LACCASE FROM CERRENA MAXIMA JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 62 954 2006 JRNL REFN ESSN 1744-3091 JRNL PMID 17012782 JRNL DOI 10.1107/S1744309106036578 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 39919 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2102 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2755 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE SET COUNT : 145 REMARK 3 BIN FREE R VALUE : 0.2710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3784 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 132 REMARK 3 SOLVENT ATOMS : 528 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.18000 REMARK 3 B22 (A**2) : 0.43000 REMARK 3 B33 (A**2) : -0.61000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.165 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.154 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.104 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.517 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.889 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4068 ; 0.006 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5593 ; 1.069 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 502 ; 5.861 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 183 ;36.095 ;24.863 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 508 ;11.875 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;17.144 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 639 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3182 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1946 ; 0.175 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2732 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 569 ; 0.103 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.155 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 41 ; 0.112 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 44 ; 0.121 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2562 ; 0.282 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4069 ; 0.503 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1691 ; 0.736 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1521 ; 1.094 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2H5U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1000037966. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-05 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8068 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39919 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 19.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM SODIUM CITRATE, 15% PEG 6000, REMARK 280 0.04M TRIS-MALEIN-NAOH BUFFER, PH 5.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.29050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.44200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.55050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.44200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.29050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.55050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER, WHICH PRESENTED IN REMARK 300 THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 205 CA - CB - SG ANGL. DEV. = 12.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 58 125.74 73.45 REMARK 500 SER A 113 -136.14 49.07 REMARK 500 ASN A 164 53.25 -90.94 REMARK 500 ASP A 206 -78.36 -149.12 REMARK 500 ASP A 224 53.99 36.90 REMARK 500 SER A 225 -6.09 83.45 REMARK 500 ALA A 241 -8.55 84.36 REMARK 500 PHE A 270 21.69 -140.51 REMARK 500 SER A 418 -65.09 -100.91 REMARK 500 ASN A 478 67.57 -115.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 604 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 64 NE2 REMARK 620 2 HIS A 398 NE2 171.4 REMARK 620 3 HOH A 607 O 97.6 91.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 602 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 66 ND1 REMARK 620 2 HIS A 109 NE2 132.5 REMARK 620 3 HIS A 454 NE2 112.1 113.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 603 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 111 NE2 REMARK 620 2 HIS A 400 NE2 115.9 REMARK 620 3 HIS A 452 NE2 119.2 113.7 REMARK 620 4 HOH A1132 O 99.1 104.5 100.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 601 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 395 ND1 REMARK 620 2 CYS A 453 SG 114.4 REMARK 620 3 HIS A 458 ND1 110.5 134.8 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KYA RELATED DB: PDB REMARK 900 ACTIVE LACCASE FROM TRAMETES VERSICOLOR COMPLEXED WITH 2,5-XYLIDINE REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF THE PROTEIN WAS NOT AVAILABLE REMARK 999 AT ANY SEQUENCE DATABASE AT THE TIME OF REMARK 999 PROCESSING. DBREF 2H5U A 1 499 PDB 2H5U 2H5U 1 499 SEQRES 1 A 499 GLY VAL GLY PRO VAL ALA ASP ASN THR ILE THR ASN ALA SEQRES 2 A 499 ALA THR SER PRO ASP GLY PHE SER ARG GLN ALA VAL VAL SEQRES 3 A 499 VAL ASN GLY VAL THR PRO GLY PRO LEU VAL ALA GLY ASN SEQRES 4 A 499 ILE GLY ASP ARG PHE GLN LEU ASN VAL ILE ASP ASN LEU SEQRES 5 A 499 THR ASN HIS THR MET LEU LYS THR THR SER VAL HIS TRP SEQRES 6 A 499 HIS GLY PHE PHE GLN GLN GLY THR ASN TRP ALA ASP GLY SEQRES 7 A 499 PRO ALA PHE ILE ASN GLN CYS PRO ILE SER PRO GLY HIS SEQRES 8 A 499 SER PHE LEU TYR ASP PHE GLN VAL PRO ASN GLN ALA GLY SEQRES 9 A 499 THR PHE TRP TYR HIS SER HIS LEU SER THR GLN TYR CYS SEQRES 10 A 499 ASP GLY LEU ARG GLY PRO PHE VAL VAL TYR ASP PRO ASN SEQRES 11 A 499 ASP PRO HIS ALA SER ARG TYR ASP VAL ASP ASN ASP ASP SEQRES 12 A 499 THR THR ILE THR LEU ALA ASP TRP TYR HIS THR ALA ALA SEQRES 13 A 499 LYS LEU GLY PRO ALA PHE PRO ASN GLY ALA ASP SER THR SEQRES 14 A 499 LEU ILE ASN GLY LYS GLY ARG ALA PRO SER ASP SER SER SEQRES 15 A 499 ALA GLN LEU SER VAL VAL SER VAL THR LYS GLY LYS ARG SEQRES 16 A 499 NIY ARG PHE ARG LEU VAL SER LEU SER CYS ASP PRO ASN SEQRES 17 A 499 PHE THR PHE SER ILE ASP GLY HIS ASN ASN THR ILE ILE SEQRES 18 A 499 GLU THR ASP SER VAL ASN SER GLN PRO LEU ASN THR ASP SEQRES 19 A 499 SER ILE GLN ILE PHE ALA ALA GLN ARG TYR SER PHE THR SEQRES 20 A 499 LEU ASN ALA ASN GLN ALA VAL ASP ASN TYR TRP ILE ARG SEQRES 21 A 499 ALA ASN PRO ASN PHE GLY ASN VAL GLY PHE ASN GLY GLY SEQRES 22 A 499 ILE ASN SER ALA ILE LEU ARG TYR ASP GLY ALA PRO ALA SEQRES 23 A 499 VAL GLU PRO THR THR ASN GLN SER THR SER THR GLN PRO SEQRES 24 A 499 LEU ASN GLU THR ASN LEU HIS PRO LEU VAL SER THR PRO SEQRES 25 A 499 VAL PRO GLY SER PRO ALA ALA GLY GLY VAL ASP LYS ALA SEQRES 26 A 499 ILE ASN MET ALA PHE ASN PHE ASN GLY SER ASN PHE PHE SEQRES 27 A 499 ILE ASN GLY ALA SER PHE THR PRO PRO SER VAL PRO VAL SEQRES 28 A 499 LEU LEU GLN ILE LEU SER GLY ALA GLN THR ALA GLN ASP SEQRES 29 A 499 LEU LEU PRO SER GLY SER VAL NIY THR LEU PRO SER ASN SEQRES 30 A 499 ALA SER ILE GLU ILE SER PHE PRO ALA THR ALA ALA ALA SEQRES 31 A 499 PRO GLY ALA PRO HIS PRO PHE HIS LEU HIS GLY HIS VAL SEQRES 32 A 499 PHE ALA VAL VAL ARG SER ALA GLY SER THR VAL TYR ASN SEQRES 33 A 499 TYR SER ASN PRO ILE PHE ARG ASP VAL VAL SER THR GLY SEQRES 34 A 499 THR PRO ALA ALA GLY ASP ASN VAL THR ILE ARG PHE LEU SEQRES 35 A 499 THR ASN ASN PRO GLY PRO TRP PHE LEU HIS CYS HIS ILE SEQRES 36 A 499 ASP PHE HIS LEU GLU GLY GLY PHE ALA VAL VAL GLN ALA SEQRES 37 A 499 GLU ASP VAL PRO ASP VAL LYS ALA THR ASN PRO VAL PRO SEQRES 38 A 499 GLN ALA TRP SER ASP LEU CYS PRO THR TYR ASP ALA ASN SEQRES 39 A 499 ALA PRO SER ASP GLN MODRES 2H5U ASN A 54 ASN GLYCOSYLATION SITE MODRES 2H5U ASN A 217 ASN GLYCOSYLATION SITE MODRES 2H5U ASN A 333 ASN GLYCOSYLATION SITE MODRES 2H5U ASN A 436 ASN GLYCOSYLATION SITE MODRES 2H5U NIY A 196 TYR META-NITRO-TYROSINE MODRES 2H5U NIY A 372 TYR META-NITRO-TYROSINE HET NIY A 196 15 HET NIY A 372 15 HET NAG B 1 14 HET NAG B 2 14 HET MAN B 3 11 HET MAN B 4 11 HET MAN B 5 11 HET NAG C 1 14 HET NAG C 2 14 HET MAN C 3 11 HET NAG A 508 14 HET NAG A 509 14 HET CU A 601 1 HET CU A 602 1 HET CU A 603 1 HET CU A 604 1 HETNAM NIY META-NITRO-TYROSINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CU COPPER (II) ION FORMUL 1 NIY 2(C9 H10 N2 O5) FORMUL 2 NAG 6(C8 H15 N O6) FORMUL 2 MAN 4(C6 H12 O6) FORMUL 6 CU 4(CU 2+) FORMUL 10 HOH *528(H2 O) HELIX 1 1 ASN A 54 LEU A 58 5 5 HELIX 2 2 THR A 73 ASP A 77 5 5 HELIX 3 3 THR A 114 GLY A 119 5 6 HELIX 4 4 HIS A 133 TYR A 137 5 5 HELIX 5 5 ASN A 141 ASP A 143 5 3 HELIX 6 6 PHE A 270 ILE A 274 5 5 HELIX 7 7 ASN A 301 LEU A 305 5 5 HELIX 8 8 PRO A 350 SER A 357 1 8 HELIX 9 9 ILE A 455 GLY A 461 1 7 HELIX 10 10 ASP A 473 ASN A 478 1 6 HELIX 11 11 PRO A 481 ASP A 486 1 6 HELIX 12 12 ASP A 486 ALA A 493 1 8 HELIX 13 13 ALA A 495 GLN A 499 5 5 SHEET 1 A 4 ARG A 22 VAL A 27 0 SHEET 2 A 4 VAL A 5 THR A 15 -1 N THR A 11 O VAL A 26 SHEET 3 A 4 ARG A 43 ASP A 50 1 O ASN A 47 N ASN A 8 SHEET 4 A 4 HIS A 91 GLN A 98 -1 O PHE A 97 N PHE A 44 SHEET 1 B 4 VAL A 36 ASN A 39 0 SHEET 2 B 4 ARG A 121 TYR A 127 1 O TYR A 127 N GLY A 38 SHEET 3 B 4 GLY A 104 SER A 110 -1 N PHE A 106 O PHE A 124 SHEET 4 B 4 VAL A 63 HIS A 66 -1 N HIS A 64 O HIS A 109 SHEET 1 C 6 SER A 168 ILE A 171 0 SHEET 2 C 6 THR A 145 TRP A 151 -1 N ALA A 149 O LEU A 170 SHEET 3 C 6 ARG A 195 SER A 202 1 O VAL A 201 N ILE A 146 SHEET 4 C 6 ARG A 243 ASN A 249 -1 O TYR A 244 N LEU A 200 SHEET 5 C 6 ASN A 218 THR A 223 -1 N THR A 219 O THR A 247 SHEET 6 C 6 VAL A 226 THR A 233 -1 O THR A 233 N ASN A 218 SHEET 1 D 5 VAL A 187 VAL A 190 0 SHEET 2 D 5 SER A 276 TYR A 281 1 O ILE A 278 N VAL A 188 SHEET 3 D 5 ASN A 256 PRO A 263 -1 N TYR A 257 O LEU A 279 SHEET 4 D 5 PHE A 209 ILE A 213 -1 N SER A 212 O ARG A 260 SHEET 5 D 5 ILE A 236 ILE A 238 -1 O ILE A 236 N PHE A 211 SHEET 1 E 5 LYS A 324 ASN A 327 0 SHEET 2 E 5 SER A 379 PRO A 385 1 O GLU A 381 N ILE A 326 SHEET 3 E 5 ASN A 436 LEU A 442 -1 O ILE A 439 N ILE A 382 SHEET 4 E 5 PHE A 404 ARG A 408 -1 N ALA A 405 O ARG A 440 SHEET 5 E 5 PHE A 422 ARG A 423 -1 O ARG A 423 N PHE A 404 SHEET 1 F 2 PHE A 330 PHE A 332 0 SHEET 2 F 2 PHE A 337 ILE A 339 -1 O PHE A 338 N ASN A 331 SHEET 1 G 5 VAL A 371 LEU A 374 0 SHEET 2 G 5 ALA A 464 GLU A 469 1 O VAL A 466 N NIY A 372 SHEET 3 G 5 GLY A 447 CYS A 453 -1 N TRP A 449 O GLN A 467 SHEET 4 G 5 PRO A 396 LEU A 399 -1 N HIS A 398 O HIS A 452 SHEET 5 G 5 VAL A 425 SER A 427 -1 O VAL A 426 N PHE A 397 SSBOND 1 CYS A 85 CYS A 488 1555 1555 2.04 SSBOND 2 CYS A 117 CYS A 205 1555 1555 2.02 LINK ND2 ASN A 54 C1 NAG B 1 1555 1555 1.44 LINK C ARG A 195 N NIY A 196 1555 1555 1.33 LINK C NIY A 196 N ARG A 197 1555 1555 1.33 LINK ND2 ASN A 217 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 333 C1 NAG A 508 1555 1555 1.44 LINK C VAL A 371 N NIY A 372 1555 1555 1.33 LINK C NIY A 372 N THR A 373 1555 1555 1.33 LINK ND2 ASN A 436 C1 NAG A 509 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.43 LINK O4 NAG B 2 C1 MAN B 3 1555 1555 1.44 LINK O6 MAN B 3 C1 MAN B 4 1555 1555 1.44 LINK O3 MAN B 4 C1 MAN B 5 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG C 2 C1 MAN C 3 1555 1555 1.45 LINK NE2 HIS A 64 CU CU A 604 1555 1555 1.98 LINK ND1 HIS A 66 CU CU A 602 1555 1555 2.00 LINK NE2 HIS A 109 CU CU A 602 1555 1555 2.01 LINK NE2 HIS A 111 CU CU A 603 1555 1555 2.00 LINK ND1 HIS A 395 CU CU A 601 1555 1555 2.00 LINK NE2 HIS A 398 CU CU A 604 1555 1555 1.97 LINK NE2 HIS A 400 CU CU A 603 1555 1555 1.99 LINK NE2 HIS A 452 CU CU A 603 1555 1555 1.99 LINK SG CYS A 453 CU CU A 601 1555 1555 2.31 LINK NE2 HIS A 454 CU CU A 602 1555 1555 2.01 LINK ND1 HIS A 458 CU CU A 601 1555 1555 1.99 LINK CU CU A 603 O HOH A1132 1555 1555 1.84 LINK CU CU A 604 O HOH A 607 1555 1555 2.59 CISPEP 1 GLY A 3 PRO A 4 0 0.99 CISPEP 2 THR A 31 PRO A 32 0 -3.42 CISPEP 3 LEU A 366 PRO A 367 0 0.73 CISPEP 4 ALA A 393 PRO A 394 0 -1.93 CRYST1 52.581 77.101 130.884 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019018 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012970 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007640 0.00000