HEADER HORMONE/GROWTH FACTOR 01-JUN-06 2H79 TITLE CRYSTAL STRUCTURE OF HUMAN TR ALPHA BOUND T3 IN ORTHORHOMBIC SPACE TITLE 2 GROUP COMPND MOL_ID: 1; COMPND 2 MOLECULE: THRA PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: THRA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BLS21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: T7; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS TR ALPHA, TR, T3, HORMONE-GROWTH FACTOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.S.NASCIMENTO,S.M.G.DIAS,F.M.NUNES,R.APARICIO,L.BLEICHER, AUTHOR 2 A.L.B.AMBROSIO,A.C.M.FIGUEIRA,M.A.M.SANTOS,M.O.NETO,H.FISCHER, AUTHOR 3 H.F.M.TOGASHI,A.F.CRAIEVICH,R.C.GARRAT,J.D.BAXTER,P.WEBB, AUTHOR 4 I.POLIKARPOV REVDAT 5 15-NOV-23 2H79 1 ATOM REVDAT 4 20-OCT-21 2H79 1 REMARK SEQADV LINK REVDAT 3 24-JAN-18 2H79 1 AUTHOR REMARK REVDAT 2 24-FEB-09 2H79 1 VERSN REVDAT 1 25-JUL-06 2H79 0 JRNL AUTH A.S.NASCIMENTO,S.M.G.DIAS,F.M.NUNES,R.APARICIO, JRNL AUTH 2 A.L.B.AMBROSIO,L.BLEICHER,A.C.M.FIGUEIRA,M.A.M.SANTOS, JRNL AUTH 3 M.O.NETO,H.FISCHER,M.TOGASHI,A.F.CRAIEVICH,R.C.GARRATT, JRNL AUTH 4 J.D.BAXTER,P.WEBB,I.POLIKARPOV JRNL TITL STRUCTURAL REARRANGEMENTS IN THE THYROID HORMONE RECEPTOR JRNL TITL 2 HINGE DOMAIN AND THEIR PUTATIVE ROLE IN THE RECEPTOR JRNL TITL 3 FUNCTION. JRNL REF J.MOL.BIOL. V. 360 586 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16781732 JRNL DOI 10.1016/J.JMB.2006.05.008 REMARK 2 REMARK 2 RESOLUTION. 1.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 39069 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2081 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.87 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.92 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2780 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 156 REMARK 3 BIN FREE R VALUE : 0.2710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2137 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 427 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : -0.19000 REMARK 3 B33 (A**2) : 0.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.087 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.093 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.942 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2287 ; 0.041 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3094 ; 3.846 ; 1.998 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 266 ; 6.397 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 347 ; 0.292 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1690 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1302 ; 0.267 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 342 ; 0.286 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 54 ; 0.327 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 36 ; 0.247 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1355 ; 1.730 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2225 ; 2.887 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 932 ; 4.809 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 869 ; 6.924 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 143 A 156 REMARK 3 ORIGIN FOR THE GROUP (A): 12.5644 39.1732 -1.6062 REMARK 3 T TENSOR REMARK 3 T11: 0.1111 T22: 0.1113 REMARK 3 T33: 0.1113 T12: -0.0004 REMARK 3 T13: 0.0007 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 12.1962 L22: 3.8805 REMARK 3 L33: 20.8447 L12: 0.4289 REMARK 3 L13: 4.2664 L23: 3.1105 REMARK 3 S TENSOR REMARK 3 S11: -0.3430 S12: -0.6264 S13: 0.1406 REMARK 3 S21: -0.3068 S22: 0.2243 S23: 0.3039 REMARK 3 S31: -0.2620 S32: 0.1386 S33: 0.1188 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 157 A 407 REMARK 3 ORIGIN FOR THE GROUP (A): 27.3798 9.6562 15.7798 REMARK 3 T TENSOR REMARK 3 T11: 0.0758 T22: 0.0873 REMARK 3 T33: 0.0797 T12: -0.0121 REMARK 3 T13: 0.0030 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 1.1024 L22: 1.1670 REMARK 3 L33: 0.9753 L12: -0.1077 REMARK 3 L13: 0.3747 L23: -0.4408 REMARK 3 S TENSOR REMARK 3 S11: 0.0009 S12: -0.0686 S13: -0.1376 REMARK 3 S21: 0.0195 S22: 0.0149 S23: 0.0927 REMARK 3 S31: 0.0807 S32: -0.0674 S33: -0.0159 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 1 REMARK 3 ORIGIN FOR THE GROUP (A): 26.9831 1.8340 18.3282 REMARK 3 T TENSOR REMARK 3 T11: 0.1464 T22: 0.0504 REMARK 3 T33: 0.1016 T12: -0.0345 REMARK 3 T13: 0.0016 T23: 0.0633 REMARK 3 L TENSOR REMARK 3 L11: 10.3081 L22: -4.4082 REMARK 3 L33: 3.1943 L12: -0.5236 REMARK 3 L13: 6.5062 L23: 8.1812 REMARK 3 S TENSOR REMARK 3 S11: -0.0725 S12: 0.1663 S13: -0.1286 REMARK 3 S21: 0.2040 S22: -0.0715 S23: -0.2957 REMARK 3 S31: -0.3191 S32: 0.2623 S33: 0.1440 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2H79 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1000038017. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39069 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.870 REMARK 200 RESOLUTION RANGE LOW (A) : 63.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 7.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 M SODIUM CACODYLATE AND 0.1M REMARK 280 SODIUM ACETATE THREEHYDRATE, PH 7.2, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.99050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.10550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.39750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.10550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.99050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.39750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 409 REMARK 465 VAL A 410 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ALA A 142 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 HIS A 184 ND1 CD2 CE1 NE2 REMARK 480 LYS A 190 CD CE NZ REMARK 480 GLN A 408 CA C O CB CG CD OE1 REMARK 480 GLN A 408 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 428 O HOH A 823 1.34 REMARK 500 CA ALA A 142 N ARG A 143 1.68 REMARK 500 CD1 LEU A 333 O HOH A 580 1.71 REMARK 500 CD1 LEU A 333 O HOH A 794 1.76 REMARK 500 CE1 HIS A 355 O HOH A 799 1.86 REMARK 500 O HOH A 835 O HOH A 836 1.88 REMARK 500 OE2 GLU A 339 O HOH A 591 1.90 REMARK 500 O HOH A 449 O HOH A 827 1.91 REMARK 500 OE1 GLU A 339 O HOH A 587 1.93 REMARK 500 OD2 ASP A 336 O HOH A 800 1.97 REMARK 500 OE2 GLU A 406 O HOH A 692 1.97 REMARK 500 CE1 CAS A 244 O HOH A 489 1.98 REMARK 500 OG SER A 341 O HOH A 583 1.98 REMARK 500 O HOH A 436 O HOH A 829 1.99 REMARK 500 CD GLU A 339 O HOH A 587 2.01 REMARK 500 CG GLU A 241 O HOH A 584 2.07 REMARK 500 O HOH A 491 O HOH A 830 2.09 REMARK 500 O HOH A 704 O HOH A 824 2.10 REMARK 500 OE1 GLN A 181 NH1 ARG A 188 2.10 REMARK 500 OD1 ASN A 359 O HOH A 820 2.13 REMARK 500 OE1 GLN A 198 O HOH A 566 2.15 REMARK 500 O HOH A 494 O HOH A 783 2.16 REMARK 500 O GLY A 182 O HOH A 555 2.16 REMARK 500 O HOH A 523 O HOH A 795 2.19 REMARK 500 O HOH A 456 O HOH A 600 2.19 REMARK 500 O HOH A 481 O HOH A 832 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 765 O HOH A 782 3655 1.75 REMARK 500 CE1 CAS A 244 O HOH A 799 4555 1.94 REMARK 500 O HOH A 712 O HOH A 830 4455 2.12 REMARK 500 O HOH A 518 O HOH A 789 4455 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA A 142 C ARG A 143 N -0.297 REMARK 500 GLU A 163 CD GLU A 163 OE2 0.075 REMARK 500 GLU A 164 CD GLU A 164 OE2 0.072 REMARK 500 ALA A 174 CA ALA A 174 CB 0.173 REMARK 500 HIS A 184 CG HIS A 184 CD2 -0.284 REMARK 500 LYS A 190 CG LYS A 190 CD -0.406 REMARK 500 VAL A 202 CB VAL A 202 CG2 0.130 REMARK 500 LYS A 209 CE LYS A 209 NZ 0.158 REMARK 500 PHE A 232 CG PHE A 232 CD1 0.094 REMARK 500 MET A 238 SD MET A 238 CE -0.513 REMARK 500 GLU A 245 CD GLU A 245 OE2 0.124 REMARK 500 LYS A 252 CE LYS A 252 NZ 0.155 REMARK 500 CYS A 254 CB CYS A 254 SG -0.110 REMARK 500 CYS A 255 CB CYS A 255 SG 0.172 REMARK 500 LYS A 304 CD LYS A 304 CE 0.220 REMARK 500 LYS A 304 CE LYS A 304 NZ 0.266 REMARK 500 PHE A 405 CD1 PHE A 405 CE1 0.139 REMARK 500 GLN A 408 N GLN A 408 CA 0.278 REMARK 500 GLN A 408 CB GLN A 408 CG -0.225 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 142 CA - C - N ANGL. DEV. = -34.1 DEGREES REMARK 500 ALA A 142 O - C - N ANGL. DEV. = 26.4 DEGREES REMARK 500 ARG A 143 C - N - CA ANGL. DEV. = -25.0 DEGREES REMARK 500 HIS A 184 CB - CG - CD2 ANGL. DEV. = -10.3 DEGREES REMARK 500 HIS A 184 ND1 - CG - CD2 ANGL. DEV. = 12.9 DEGREES REMARK 500 HIS A 184 CB - CG - ND1 ANGL. DEV. = -19.0 DEGREES REMARK 500 HIS A 184 CG - ND1 - CE1 ANGL. DEV. = -11.9 DEGREES REMARK 500 HIS A 184 CG - CD2 - NE2 ANGL. DEV. = -8.0 DEGREES REMARK 500 LYS A 190 CB - CG - CD ANGL. DEV. = 31.3 DEGREES REMARK 500 ASP A 194 CB - CG - OD2 ANGL. DEV. = 8.2 DEGREES REMARK 500 ARG A 228 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 LEU A 242 CB - CG - CD1 ANGL. DEV. = -10.3 DEGREES REMARK 500 ARG A 266 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 ASP A 268 CB - CG - OD2 ANGL. DEV. = 7.8 DEGREES REMARK 500 LYS A 304 CD - CE - NZ ANGL. DEV. = 28.2 DEGREES REMARK 500 LEU A 319 CB - CG - CD1 ANGL. DEV. = 15.5 DEGREES REMARK 500 ASP A 328 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 328 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 329 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 329 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP A 336 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 LEU A 347 CB - CG - CD1 ANGL. DEV. = 10.3 DEGREES REMARK 500 LEU A 347 CB - CG - CD2 ANGL. DEV. = 10.9 DEGREES REMARK 500 ARG A 375 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 MET A 376 CG - SD - CE ANGL. DEV. = 10.1 DEGREES REMARK 500 ASP A 407 CB - CG - OD2 ANGL. DEV. = 8.8 DEGREES REMARK 500 GLN A 408 C - N - CA ANGL. DEV. = -33.3 DEGREES REMARK 500 GLN A 408 CA - CB - CG ANGL. DEV. = 21.2 DEGREES REMARK 500 GLN A 408 CB - CG - CD ANGL. DEV. = 58.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 143 -148.00 -126.40 REMARK 500 ASP A 407 -65.12 -140.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 406 ASP A 407 -147.51 REMARK 500 ASP A 407 GLN A 408 115.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 HIS A 184 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 HOH A 452 REMARK 615 HOH A 660 REMARK 615 HOH A 805 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE T3 A 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2H6W RELATED DB: PDB REMARK 900 RELATED ID: 2H77 RELATED DB: PDB DBREF 2H79 A 148 410 UNP Q6FH41 Q6FH41_HUMAN 148 410 SEQADV 2H79 ALA A 142 UNP Q6FH41 CLONING ARTIFACT SEQADV 2H79 ARG A 143 UNP Q6FH41 CLONING ARTIFACT SEQADV 2H79 GLY A 144 UNP Q6FH41 CLONING ARTIFACT SEQADV 2H79 SER A 145 UNP Q6FH41 CLONING ARTIFACT SEQADV 2H79 HIS A 146 UNP Q6FH41 CLONING ARTIFACT SEQADV 2H79 MET A 147 UNP Q6FH41 CLONING ARTIFACT SEQADV 2H79 CAS A 244 UNP Q6FH41 CYS 244 MODIFIED RESIDUE SEQADV 2H79 CAS A 334 UNP Q6FH41 CYS 334 MODIFIED RESIDUE SEQADV 2H79 CAS A 380 UNP Q6FH41 CYS 380 MODIFIED RESIDUE SEQADV 2H79 CAS A 388 UNP Q6FH41 MET 388 ENGINEERED MUTATION SEQADV 2H79 CAS A 392 UNP Q6FH41 CYS 392 MODIFIED RESIDUE SEQRES 1 A 269 ALA ARG GLY SER HIS MET GLU GLU MET ILE ARG SER LEU SEQRES 2 A 269 GLN GLN ARG PRO GLU PRO THR PRO GLU GLU TRP ASP LEU SEQRES 3 A 269 ILE HIS ILE ALA THR GLU ALA HIS ARG SER THR ASN ALA SEQRES 4 A 269 GLN GLY SER HIS TRP LYS GLN ARG ARG LYS PHE LEU PRO SEQRES 5 A 269 ASP ASP ILE GLY GLN SER PRO ILE VAL SER MET PRO ASP SEQRES 6 A 269 GLY ASP LYS VAL ASP LEU GLU ALA PHE SER GLU PHE THR SEQRES 7 A 269 LYS ILE ILE THR PRO ALA ILE THR ARG VAL VAL ASP PHE SEQRES 8 A 269 ALA LYS LYS LEU PRO MET PHE SER GLU LEU PRO CAS GLU SEQRES 9 A 269 ASP GLN ILE ILE LEU LEU LYS GLY CYS CYS MET GLU ILE SEQRES 10 A 269 MET SER LEU ARG ALA ALA VAL ARG TYR ASP PRO GLU SER SEQRES 11 A 269 ASP THR LEU THR LEU SER GLY GLU MET ALA VAL LYS ARG SEQRES 12 A 269 GLU GLN LEU LYS ASN GLY GLY LEU GLY VAL VAL SER ASP SEQRES 13 A 269 ALA ILE PHE GLU LEU GLY LYS SER LEU SER ALA PHE ASN SEQRES 14 A 269 LEU ASP ASP THR GLU VAL ALA LEU LEU GLN ALA VAL LEU SEQRES 15 A 269 LEU MET SER THR ASP ARG SER GLY LEU LEU CAS VAL ASP SEQRES 16 A 269 LYS ILE GLU LYS SER GLN GLU ALA TYR LEU LEU ALA PHE SEQRES 17 A 269 GLU HIS TYR VAL ASN HIS ARG LYS HIS ASN ILE PRO HIS SEQRES 18 A 269 PHE TRP PRO LYS LEU LEU MET LYS VAL THR ASP LEU ARG SEQRES 19 A 269 MET ILE GLY ALA CAS HIS ALA SER ARG PHE LEU HIS CAS SEQRES 20 A 269 LYS VAL GLU CAS PRO THR GLU LEU PHE PRO PRO LEU PHE SEQRES 21 A 269 LEU GLU VAL PHE GLU ASP GLN GLU VAL MODRES 2H79 CAS A 244 CYS S-(DIMETHYLARSENIC)CYSTEINE MODRES 2H79 CAS A 334 CYS S-(DIMETHYLARSENIC)CYSTEINE MODRES 2H79 CAS A 380 CYS S-(DIMETHYLARSENIC)CYSTEINE MODRES 2H79 CAS A 388 CYS S-(DIMETHYLARSENIC)CYSTEINE MODRES 2H79 CAS A 392 CYS S-(DIMETHYLARSENIC)CYSTEINE HET CAS A 244 13 HET CAS A 334 9 HET CAS A 380 9 HET CAS A 388 9 HET CAS A 392 9 HET T3 A 1 23 HETNAM CAS S-(DIMETHYLARSENIC)CYSTEINE HETNAM T3 3,5,3'TRIIODOTHYRONINE HETSYN T3 T3; THYROID HORMONE; LIOTHYRONINE FORMUL 1 CAS 5(C5 H12 AS N O2 S) FORMUL 2 T3 C15 H12 I3 N O4 FORMUL 3 HOH *427(H2 O) HELIX 1 1 SER A 145 ARG A 152 1 8 HELIX 2 2 THR A 161 SER A 177 1 17 HELIX 3 3 HIS A 184 ARG A 189 1 6 HELIX 4 4 ASP A 211 LYS A 220 1 10 HELIX 5 5 ILE A 221 LYS A 235 1 15 HELIX 6 6 LEU A 236 GLU A 241 1 6 HELIX 7 7 PRO A 243 VAL A 265 1 23 HELIX 8 8 ARG A 284 GLY A 290 1 7 HELIX 9 9 GLY A 293 SER A 307 1 15 HELIX 10 10 ALA A 308 ASN A 310 5 3 HELIX 11 11 ASP A 312 MET A 325 1 14 HELIX 12 12 CAS A 334 LYS A 357 1 24 HELIX 13 13 HIS A 362 CAS A 392 1 31 HELIX 14 14 PRO A 393 PHE A 397 5 5 HELIX 15 15 PRO A 398 GLU A 406 1 9 SHEET 1 A 3 LYS A 190 PHE A 191 0 SHEET 2 A 3 MET A 280 LYS A 283 1 O ALA A 281 N LYS A 190 SHEET 3 A 3 THR A 273 LEU A 276 -1 N LEU A 276 O MET A 280 LINK C PRO A 243 N CAS A 244 1555 1555 1.36 LINK C CAS A 244 N GLU A 245 1555 1555 1.33 LINK C LEU A 333 N CAS A 334 1555 1555 1.33 LINK C CAS A 334 N VAL A 335 1555 1555 1.33 LINK C ALA A 379 N CAS A 380 1555 1555 1.33 LINK C CAS A 380 N HIS A 381 1555 1555 1.32 LINK C HIS A 387 N CAS A 388 1555 1555 1.36 LINK C CAS A 388 N LYS A 389 1555 1555 1.35 LINK C GLU A 391 N CAS A 392 1555 1555 1.33 LINK C CAS A 392 N PRO A 393 1555 1555 1.33 SITE 1 AC1 18 PHE A 218 ILE A 222 ALA A 225 ARG A 228 SITE 2 AC1 18 MET A 259 ARG A 262 THR A 275 LEU A 276 SITE 3 AC1 18 SER A 277 GLY A 290 LEU A 292 ILE A 299 SITE 4 AC1 18 HIS A 381 CAS A 388 PHE A 401 HOH A 417 SITE 5 AC1 18 HOH A 435 HOH A 471 CRYST1 59.981 80.795 102.211 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016672 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012377 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009784 0.00000