data_2H7F # _entry.id 2H7F # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.350 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2H7F pdb_00002h7f 10.2210/pdb2h7f/pdb NDB PD0816 ? ? RCSB RCSB038023 ? ? WWPDB D_1000038023 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2H7G _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 2H7F _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2006-06-02 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Perry, K.' 1 'Hwang, Y.' 2 'Bushman, F.D.' 3 'Van Duyne, G.D.' 4 # _citation.id primary _citation.title 'Structural basis for specificity in the poxvirus topoisomerase.' _citation.journal_abbrev Mol.Cell _citation.journal_volume 23 _citation.page_first 343 _citation.page_last 354 _citation.year 2006 _citation.journal_id_ASTM MOCEFL _citation.country US _citation.journal_id_ISSN 1097-2765 _citation.journal_id_CSD 2168 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16885024 _citation.pdbx_database_id_DOI 10.1016/j.molcel.2006.06.015 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Perry, K.' 1 ? primary 'Hwang, Y.' 2 ? primary 'Bushman, F.D.' 3 ? primary 'Van Duyne, G.D.' 4 ? # _cell.length_a 68.523 _cell.length_b 138.232 _cell.length_c 113.079 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 2H7F _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.entry_id 2H7F _symmetry.Int_Tables_number 20 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*TP*TP*GP*TP*CP*GP*CP*CP*CP*TP*T)-3'" 3291.145 1 ? ? ? ? 2 polymer syn "5'-D(*TP*AP*AP*TP*AP*AP*GP*GP*GP*CP*GP*AP*CP*A)-3'" 4337.855 1 ? ? ? ? 3 polymer man 'DNA topoisomerase 1' 36697.430 1 5.99.1.2 'C100S, C211S' ? ? 4 water nat water 18.015 54 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name 'DNA topoisomerase I' # _entity_name_sys.entity_id 3 _entity_name_sys.name E.C.5.99.1.2 # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DT)(DT)(DG)(DT)(DC)(DG)(DC)(DC)(DC)(DT)(DT)' TTGTCGCCCTT Y ? 2 polydeoxyribonucleotide no no '(DT)(DA)(DA)(DT)(DA)(DA)(DG)(DG)(DG)(DC)(DG)(DA)(DC)(DA)' TAATAAGGGCGACA Z ? 3 'polypeptide(L)' no yes ;MRALFYKDGKLFTDNNFLNPVSDNNPAYEVLQHVKIPTHLTDVVVYGQTWEEALTRLIFVGSDSKGRRQYFYGKMHVQNR NAKRDRIFVRVYNVMKRINSFINKNIKKSSTDSNYQLAVFMLMETMFFIRFGKMKYLKENETVGLLTLKNKHIEISPDKI VIKFVGKDKVSHEFVVHKSNRLYKPLLKLTDDSSPEEFLFNKLSERKVYESIKQFGIRIKDLRTYGVNYTFLYNFWTNVK SISPLPSPKKLIALTIKQTAEVVGHTPSISKRA(PTR)MATTILEMVKDKNFLDVVSKTTFDEFLSIVVDHVKSSTDG ; ;MRALFYKDGKLFTDNNFLNPVSDNNPAYEVLQHVKIPTHLTDVVVYGQTWEEALTRLIFVGSDSKGRRQYFYGKMHVQNR NAKRDRIFVRVYNVMKRINSFINKNIKKSSTDSNYQLAVFMLMETMFFIRFGKMKYLKENETVGLLTLKNKHIEISPDKI VIKFVGKDKVSHEFVVHKSNRLYKPLLKLTDDSSPEEFLFNKLSERKVYESIKQFGIRIKDLRTYGVNYTFLYNFWTNVK SISPLPSPKKLIALTIKQTAEVVGHTPSISKRAYMATTILEMVKDKNFLDVVSKTTFDEFLSIVVDHVKSSTDG ; X ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DT n 1 3 DG n 1 4 DT n 1 5 DC n 1 6 DG n 1 7 DC n 1 8 DC n 1 9 DC n 1 10 DT n 1 11 DT n 2 1 DT n 2 2 DA n 2 3 DA n 2 4 DT n 2 5 DA n 2 6 DA n 2 7 DG n 2 8 DG n 2 9 DG n 2 10 DC n 2 11 DG n 2 12 DA n 2 13 DC n 2 14 DA n 3 1 MET n 3 2 ARG n 3 3 ALA n 3 4 LEU n 3 5 PHE n 3 6 TYR n 3 7 LYS n 3 8 ASP n 3 9 GLY n 3 10 LYS n 3 11 LEU n 3 12 PHE n 3 13 THR n 3 14 ASP n 3 15 ASN n 3 16 ASN n 3 17 PHE n 3 18 LEU n 3 19 ASN n 3 20 PRO n 3 21 VAL n 3 22 SER n 3 23 ASP n 3 24 ASN n 3 25 ASN n 3 26 PRO n 3 27 ALA n 3 28 TYR n 3 29 GLU n 3 30 VAL n 3 31 LEU n 3 32 GLN n 3 33 HIS n 3 34 VAL n 3 35 LYS n 3 36 ILE n 3 37 PRO n 3 38 THR n 3 39 HIS n 3 40 LEU n 3 41 THR n 3 42 ASP n 3 43 VAL n 3 44 VAL n 3 45 VAL n 3 46 TYR n 3 47 GLY n 3 48 GLN n 3 49 THR n 3 50 TRP n 3 51 GLU n 3 52 GLU n 3 53 ALA n 3 54 LEU n 3 55 THR n 3 56 ARG n 3 57 LEU n 3 58 ILE n 3 59 PHE n 3 60 VAL n 3 61 GLY n 3 62 SER n 3 63 ASP n 3 64 SER n 3 65 LYS n 3 66 GLY n 3 67 ARG n 3 68 ARG n 3 69 GLN n 3 70 TYR n 3 71 PHE n 3 72 TYR n 3 73 GLY n 3 74 LYS n 3 75 MET n 3 76 HIS n 3 77 VAL n 3 78 GLN n 3 79 ASN n 3 80 ARG n 3 81 ASN n 3 82 ALA n 3 83 LYS n 3 84 ARG n 3 85 ASP n 3 86 ARG n 3 87 ILE n 3 88 PHE n 3 89 VAL n 3 90 ARG n 3 91 VAL n 3 92 TYR n 3 93 ASN n 3 94 VAL n 3 95 MET n 3 96 LYS n 3 97 ARG n 3 98 ILE n 3 99 ASN n 3 100 SER n 3 101 PHE n 3 102 ILE n 3 103 ASN n 3 104 LYS n 3 105 ASN n 3 106 ILE n 3 107 LYS n 3 108 LYS n 3 109 SER n 3 110 SER n 3 111 THR n 3 112 ASP n 3 113 SER n 3 114 ASN n 3 115 TYR n 3 116 GLN n 3 117 LEU n 3 118 ALA n 3 119 VAL n 3 120 PHE n 3 121 MET n 3 122 LEU n 3 123 MET n 3 124 GLU n 3 125 THR n 3 126 MET n 3 127 PHE n 3 128 PHE n 3 129 ILE n 3 130 ARG n 3 131 PHE n 3 132 GLY n 3 133 LYS n 3 134 MET n 3 135 LYS n 3 136 TYR n 3 137 LEU n 3 138 LYS n 3 139 GLU n 3 140 ASN n 3 141 GLU n 3 142 THR n 3 143 VAL n 3 144 GLY n 3 145 LEU n 3 146 LEU n 3 147 THR n 3 148 LEU n 3 149 LYS n 3 150 ASN n 3 151 LYS n 3 152 HIS n 3 153 ILE n 3 154 GLU n 3 155 ILE n 3 156 SER n 3 157 PRO n 3 158 ASP n 3 159 LYS n 3 160 ILE n 3 161 VAL n 3 162 ILE n 3 163 LYS n 3 164 PHE n 3 165 VAL n 3 166 GLY n 3 167 LYS n 3 168 ASP n 3 169 LYS n 3 170 VAL n 3 171 SER n 3 172 HIS n 3 173 GLU n 3 174 PHE n 3 175 VAL n 3 176 VAL n 3 177 HIS n 3 178 LYS n 3 179 SER n 3 180 ASN n 3 181 ARG n 3 182 LEU n 3 183 TYR n 3 184 LYS n 3 185 PRO n 3 186 LEU n 3 187 LEU n 3 188 LYS n 3 189 LEU n 3 190 THR n 3 191 ASP n 3 192 ASP n 3 193 SER n 3 194 SER n 3 195 PRO n 3 196 GLU n 3 197 GLU n 3 198 PHE n 3 199 LEU n 3 200 PHE n 3 201 ASN n 3 202 LYS n 3 203 LEU n 3 204 SER n 3 205 GLU n 3 206 ARG n 3 207 LYS n 3 208 VAL n 3 209 TYR n 3 210 GLU n 3 211 SER n 3 212 ILE n 3 213 LYS n 3 214 GLN n 3 215 PHE n 3 216 GLY n 3 217 ILE n 3 218 ARG n 3 219 ILE n 3 220 LYS n 3 221 ASP n 3 222 LEU n 3 223 ARG n 3 224 THR n 3 225 TYR n 3 226 GLY n 3 227 VAL n 3 228 ASN n 3 229 TYR n 3 230 THR n 3 231 PHE n 3 232 LEU n 3 233 TYR n 3 234 ASN n 3 235 PHE n 3 236 TRP n 3 237 THR n 3 238 ASN n 3 239 VAL n 3 240 LYS n 3 241 SER n 3 242 ILE n 3 243 SER n 3 244 PRO n 3 245 LEU n 3 246 PRO n 3 247 SER n 3 248 PRO n 3 249 LYS n 3 250 LYS n 3 251 LEU n 3 252 ILE n 3 253 ALA n 3 254 LEU n 3 255 THR n 3 256 ILE n 3 257 LYS n 3 258 GLN n 3 259 THR n 3 260 ALA n 3 261 GLU n 3 262 VAL n 3 263 VAL n 3 264 GLY n 3 265 HIS n 3 266 THR n 3 267 PRO n 3 268 SER n 3 269 ILE n 3 270 SER n 3 271 LYS n 3 272 ARG n 3 273 ALA n 3 274 PTR n 3 275 MET n 3 276 ALA n 3 277 THR n 3 278 THR n 3 279 ILE n 3 280 LEU n 3 281 GLU n 3 282 MET n 3 283 VAL n 3 284 LYS n 3 285 ASP n 3 286 LYS n 3 287 ASN n 3 288 PHE n 3 289 LEU n 3 290 ASP n 3 291 VAL n 3 292 VAL n 3 293 SER n 3 294 LYS n 3 295 THR n 3 296 THR n 3 297 PHE n 3 298 ASP n 3 299 GLU n 3 300 PHE n 3 301 LEU n 3 302 SER n 3 303 ILE n 3 304 VAL n 3 305 VAL n 3 306 ASP n 3 307 HIS n 3 308 VAL n 3 309 LYS n 3 310 SER n 3 311 SER n 3 312 THR n 3 313 ASP n 3 314 GLY n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Orthopoxvirus _entity_src_gen.pdbx_gene_src_gene TOP1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Variola virus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10255 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code 1 UNP TOP1_VARV P32989 3 1 ? ? 2 PDB 2H7F 2H7F 1 ? ? ? 3 PDB 2H7F 2H7F 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2H7F X 1 ? 314 ? P32989 1 ? 314 ? 1 314 2 2 2H7F Y 1 ? 11 ? 2H7F 501 ? 511 ? 501 511 3 3 2H7F Z 1 ? 14 ? 2H7F 515 ? 528 ? 515 528 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2H7F SER X 100 ? UNP P32989 CYS 100 'engineered mutation' 100 1 1 2H7F SER X 211 ? UNP P32989 CYS 211 'engineered mutation' 211 2 1 2H7F PTR X 274 ? UNP P32989 TYR 274 'modified residue' 274 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 PTR 'L-peptide linking' n O-PHOSPHOTYROSINE PHOSPHONOTYROSINE 'C9 H12 N O6 P' 261.168 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 2H7F _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.00 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 59.00 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '8% PEG 8000, 0.1M Tris-HCl, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 294K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'PEG 8000' ? ? ? 1 2 1 Tris-HCl ? ? ? 1 3 1 H2O ? ? ? 1 4 2 'PEG 8000' ? ? ? 1 5 2 Tris-HCl ? ? ? 1 6 2 H2O ? ? ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 3 ? ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD 'ADSC QUANTUM 4' 2005-04-12 ? 2 CCD 'ADSC QUANTUM 4' 2005-04-12 ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.monochromator _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.pdbx_scattering_type 1 1 'SINGLE WAVELENGTH' ? M x-ray 2 2 MAD ? M x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97917 1.0 2 0.97952 1.0 3 0.97935 1.0 4 0.96394 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline 1 SYNCHROTRON 'ALS BEAMLINE 8.2.1' ? 0.97917 ALS 8.2.1 2 SYNCHROTRON 'ALS BEAMLINE 8.2.1' ? '0.97952, 0.97935, 0.96394' ALS 8.2.1 # _reflns.entry_id 2H7F _reflns.d_resolution_high 2.700 _reflns.d_resolution_low 50.000 _reflns.number_obs 14945 _reflns.pdbx_Rmerge_I_obs 0.038 _reflns.pdbx_netI_over_sigmaI 29.400 _reflns.pdbx_chi_squared 1.212 _reflns.pdbx_redundancy 4.300 _reflns.percent_possible_obs 99.500 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1,2 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.70 2.78 ? ? ? 0.199 ? ? 1.266 4.30 ? 1214 99.80 1 1,2 2.78 2.87 ? ? ? 0.152 ? ? 1.443 4.30 ? 1231 99.80 2 1,2 2.87 2.97 ? ? ? 0.117 ? ? 1.200 4.40 ? 1238 99.80 3 1,2 2.97 3.09 ? ? ? 0.095 ? ? 1.277 4.30 ? 1224 99.70 4 1,2 3.09 3.23 ? ? ? 0.07 ? ? 1.139 4.30 ? 1239 99.80 5 1,2 3.23 3.40 ? ? ? 0.054 ? ? 1.159 4.30 ? 1219 99.80 6 1,2 3.40 3.61 ? ? ? 0.043 ? ? 1.266 4.30 ? 1248 99.70 7 1,2 3.61 3.89 ? ? ? 0.043 ? ? 1.739 4.20 ? 1247 99.90 8 1,2 3.89 4.29 ? ? ? 0.031 ? ? 1.034 4.30 ? 1246 99.70 9 1,2 4.29 4.90 ? ? ? 0.032 ? ? 1.148 4.30 ? 1252 99.50 10 1,2 4.90 6.18 ? ? ? 0.029 ? ? 1.005 4.30 ? 1274 99.50 11 1,2 6.18 50.00 ? ? ? 0.034 ? ? 0.884 4.10 ? 1313 97.70 12 1,2 # _refine.entry_id 2H7F _refine.ls_d_res_high 2.700 _refine.ls_d_res_low 50.0 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.720 _refine.ls_number_reflns_obs 15090 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.ls_R_factor_all 0.193 _refine.ls_R_factor_R_work 0.191 _refine.ls_R_factor_R_free 0.237 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 770 _refine.B_iso_mean 68.984 _refine.aniso_B[1][1] -1.300 _refine.aniso_B[2][2] 4.040 _refine.aniso_B[3][3] -2.740 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.962 _refine.correlation_coeff_Fo_to_Fc_free 0.942 _refine.pdbx_overall_ESU_R 0.725 _refine.pdbx_overall_ESU_R_Free 0.307 _refine.overall_SU_ML 0.234 _refine.overall_SU_B 24.213 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_obs 0.193 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.details ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2585 _refine_hist.pdbx_number_atoms_nucleic_acid 505 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 54 _refine_hist.number_atoms_total 3144 _refine_hist.d_res_high 2.700 _refine_hist.d_res_low 50.0 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 3231 0.011 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 4469 1.530 2.171 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 313 5.721 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 119 37.073 23.697 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 505 20.164 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 15 20.930 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 500 0.093 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 2200 0.005 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 1323 0.225 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 2174 0.312 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 94 0.122 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 23 0.235 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 6 0.154 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1610 0.520 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2566 0.915 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 1989 1.229 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 1903 1.982 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.700 _refine_ls_shell.d_res_low 2.770 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.910 _refine_ls_shell.number_reflns_R_work 1047 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.315 _refine_ls_shell.R_factor_R_free 0.37 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 56 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 1103 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2H7F _struct.title 'Structure of variola topoisomerase covalently bound to DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2H7F _struct_keywords.pdbx_keywords ISOMERASE/DNA _struct_keywords.text 'type IB topoisomerase, dna binding, protein-dna complex, isomerase, ISOMERASE-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO C 26 ? VAL C 34 ? PRO X 26 VAL X 34 1 ? 9 HELX_P HELX_P2 2 THR C 49 ? LEU C 54 ? THR X 49 LEU X 54 1 ? 6 HELX_P HELX_P3 3 GLY C 73 ? ILE C 106 ? GLY X 73 ILE X 106 1 ? 34 HELX_P HELX_P4 4 ASP C 112 ? PHE C 128 ? ASP X 112 PHE X 128 1 ? 17 HELX_P HELX_P5 5 LYS C 133 ? GLU C 141 ? LYS X 133 GLU X 141 1 ? 9 HELX_P HELX_P6 6 LYS C 149 ? LYS C 151 ? LYS X 149 LYS X 151 5 ? 3 HELX_P HELX_P7 7 LYS C 167 ? LYS C 169 ? LYS X 167 LYS X 169 5 ? 3 HELX_P HELX_P8 8 LEU C 182 ? THR C 190 ? LEU X 182 THR X 190 1 ? 9 HELX_P HELX_P9 9 SER C 204 ? LYS C 213 ? SER X 204 LYS X 213 1 ? 10 HELX_P HELX_P10 10 GLN C 214 ? GLY C 216 ? GLN X 214 GLY X 216 5 ? 3 HELX_P HELX_P11 11 ARG C 218 ? ILE C 242 ? ARG X 218 ILE X 242 1 ? 25 HELX_P HELX_P12 12 SER C 247 ? GLY C 264 ? SER X 247 GLY X 264 1 ? 18 HELX_P HELX_P13 13 THR C 266 ? PTR C 274 ? THR X 266 PTR X 274 1 ? 9 HELX_P HELX_P14 14 ALA C 276 ? VAL C 283 ? ALA X 276 VAL X 283 1 ? 8 HELX_P HELX_P15 15 LYS C 284 ? LYS C 286 ? LYS X 284 LYS X 286 5 ? 3 HELX_P HELX_P16 16 ASN C 287 ? LYS C 294 ? ASN X 287 LYS X 294 1 ? 8 HELX_P HELX_P17 17 THR C 296 ? THR C 312 ? THR X 296 THR X 312 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? A DT 11 "C3'" ? ? ? 1_555 C PTR 274 O3P ? ? Y DT 511 X PTR 274 1_555 ? ? ? ? ? ? ? 2.121 ? ? covale2 covale both ? C ALA 273 C ? ? ? 1_555 C PTR 274 N ? ? X ALA 273 X PTR 274 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale3 covale both ? C PTR 274 C ? ? ? 1_555 C MET 275 N ? ? X PTR 274 X MET 275 1_555 ? ? ? ? ? ? ? 1.329 ? ? hydrog1 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 14 N1 ? ? Y DT 502 Z DA 528 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog2 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 13 N3 ? ? Y DG 503 Z DC 527 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 13 O2 ? ? Y DG 503 Z DC 527 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 13 N4 ? ? Y DG 503 Z DC 527 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 12 N1 ? ? Y DT 504 Z DA 526 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 12 N6 ? ? Y DT 504 Z DA 526 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 11 N1 ? ? Y DC 505 Z DG 525 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 11 O6 ? ? Y DC 505 Z DG 525 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 11 N2 ? ? Y DC 505 Z DG 525 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 10 N3 ? ? Y DG 506 Z DC 524 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 10 O2 ? ? Y DG 506 Z DC 524 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 10 N4 ? ? Y DG 506 Z DC 524 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 9 N1 ? ? Y DC 507 Z DG 523 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 9 O6 ? ? Y DC 507 Z DG 523 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 9 N2 ? ? Y DC 507 Z DG 523 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 8 N1 ? ? Y DC 508 Z DG 522 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 8 O6 ? ? Y DC 508 Z DG 522 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 8 N2 ? ? Y DC 508 Z DG 522 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 7 N1 ? ? Y DC 509 Z DG 521 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 7 O6 ? ? Y DC 509 Z DG 521 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 7 N2 ? ? Y DC 509 Z DG 521 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DT 10 N3 ? ? ? 1_555 B DA 6 N1 ? ? Y DT 510 Z DA 520 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DT 10 O4 ? ? ? 1_555 B DA 6 N6 ? ? Y DT 510 Z DA 520 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DT 11 N3 ? ? ? 1_555 B DA 5 N1 ? ? Y DT 511 Z DA 519 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DT 11 O4 ? ? ? 1_555 B DA 5 N6 ? ? Y DT 511 Z DA 519 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS C 10 ? PHE C 12 ? LYS X 10 PHE X 12 A 2 ALA C 3 ? LYS C 7 ? ALA X 3 LYS X 7 A 3 THR C 41 ? TYR C 46 ? THR X 41 TYR X 46 A 4 LEU C 57 ? SER C 62 ? LEU X 57 SER X 62 A 5 ARG C 68 ? TYR C 72 ? ARG X 68 TYR X 72 B 1 ILE C 153 ? ILE C 155 ? ILE X 153 ILE X 155 B 2 LYS C 159 ? VAL C 165 ? LYS X 159 VAL X 165 B 3 SER C 171 ? HIS C 177 ? SER X 171 HIS X 177 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O PHE C 12 ? O PHE X 12 N PHE C 5 ? N PHE X 5 A 2 3 N LEU C 4 ? N LEU X 4 O VAL C 45 ? O VAL X 45 A 3 4 N VAL C 44 ? N VAL X 44 O VAL C 60 ? O VAL X 60 A 4 5 N GLY C 61 ? N GLY X 61 O GLN C 69 ? O GLN X 69 B 1 2 N GLU C 154 ? N GLU X 154 O VAL C 161 ? O VAL X 161 B 2 3 N ILE C 160 ? N ILE X 160 O VAL C 176 ? O VAL X 176 # _atom_sites.entry_id 2H7F _atom_sites.fract_transf_matrix[1][1] 0.014594 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007234 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008843 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 501 501 DT T Y . n A 1 2 DT 2 502 502 DT T Y . n A 1 3 DG 3 503 503 DG G Y . n A 1 4 DT 4 504 504 DT T Y . n A 1 5 DC 5 505 505 DC C Y . n A 1 6 DG 6 506 506 DG G Y . n A 1 7 DC 7 507 507 DC C Y . n A 1 8 DC 8 508 508 DC C Y . n A 1 9 DC 9 509 509 DC C Y . n A 1 10 DT 10 510 510 DT T Y . n A 1 11 DT 11 511 511 DT T Y . n B 2 1 DT 1 515 515 DT T Z . n B 2 2 DA 2 516 516 DA A Z . n B 2 3 DA 3 517 517 DA A Z . n B 2 4 DT 4 518 518 DT T Z . n B 2 5 DA 5 519 519 DA A Z . n B 2 6 DA 6 520 520 DA A Z . n B 2 7 DG 7 521 521 DG G Z . n B 2 8 DG 8 522 522 DG G Z . n B 2 9 DG 9 523 523 DG G Z . n B 2 10 DC 10 524 524 DC C Z . n B 2 11 DG 11 525 525 DG G Z . n B 2 12 DA 12 526 526 DA A Z . n B 2 13 DC 13 527 527 DC C Z . n B 2 14 DA 14 528 528 DA A Z . n C 3 1 MET 1 1 1 MET MET X . n C 3 2 ARG 2 2 2 ARG ARG X . n C 3 3 ALA 3 3 3 ALA ALA X . n C 3 4 LEU 4 4 4 LEU LEU X . n C 3 5 PHE 5 5 5 PHE PHE X . n C 3 6 TYR 6 6 6 TYR TYR X . n C 3 7 LYS 7 7 7 LYS LYS X . n C 3 8 ASP 8 8 8 ASP ASP X . n C 3 9 GLY 9 9 9 GLY GLY X . n C 3 10 LYS 10 10 10 LYS LYS X . n C 3 11 LEU 11 11 11 LEU LEU X . n C 3 12 PHE 12 12 12 PHE PHE X . n C 3 13 THR 13 13 13 THR THR X . n C 3 14 ASP 14 14 14 ASP ASP X . n C 3 15 ASN 15 15 15 ASN ASN X . n C 3 16 ASN 16 16 16 ASN ASN X . n C 3 17 PHE 17 17 17 PHE PHE X . n C 3 18 LEU 18 18 18 LEU LEU X . n C 3 19 ASN 19 19 19 ASN ASN X . n C 3 20 PRO 20 20 20 PRO PRO X . n C 3 21 VAL 21 21 21 VAL VAL X . n C 3 22 SER 22 22 22 SER SER X . n C 3 23 ASP 23 23 23 ASP ASP X . n C 3 24 ASN 24 24 24 ASN ASN X . n C 3 25 ASN 25 25 25 ASN ASN X . n C 3 26 PRO 26 26 26 PRO PRO X . n C 3 27 ALA 27 27 27 ALA ALA X . n C 3 28 TYR 28 28 28 TYR TYR X . n C 3 29 GLU 29 29 29 GLU GLU X . n C 3 30 VAL 30 30 30 VAL VAL X . n C 3 31 LEU 31 31 31 LEU LEU X . n C 3 32 GLN 32 32 32 GLN GLN X . n C 3 33 HIS 33 33 33 HIS HIS X . n C 3 34 VAL 34 34 34 VAL VAL X . n C 3 35 LYS 35 35 35 LYS LYS X . n C 3 36 ILE 36 36 36 ILE ILE X . n C 3 37 PRO 37 37 37 PRO PRO X . n C 3 38 THR 38 38 38 THR THR X . n C 3 39 HIS 39 39 39 HIS HIS X . n C 3 40 LEU 40 40 40 LEU LEU X . n C 3 41 THR 41 41 41 THR THR X . n C 3 42 ASP 42 42 42 ASP ASP X . n C 3 43 VAL 43 43 43 VAL VAL X . n C 3 44 VAL 44 44 44 VAL VAL X . n C 3 45 VAL 45 45 45 VAL VAL X . n C 3 46 TYR 46 46 46 TYR TYR X . n C 3 47 GLY 47 47 47 GLY GLY X . n C 3 48 GLN 48 48 48 GLN GLN X . n C 3 49 THR 49 49 49 THR THR X . n C 3 50 TRP 50 50 50 TRP TRP X . n C 3 51 GLU 51 51 51 GLU GLU X . n C 3 52 GLU 52 52 52 GLU GLU X . n C 3 53 ALA 53 53 53 ALA ALA X . n C 3 54 LEU 54 54 54 LEU LEU X . n C 3 55 THR 55 55 55 THR THR X . n C 3 56 ARG 56 56 56 ARG ARG X . n C 3 57 LEU 57 57 57 LEU LEU X . n C 3 58 ILE 58 58 58 ILE ILE X . n C 3 59 PHE 59 59 59 PHE PHE X . n C 3 60 VAL 60 60 60 VAL VAL X . n C 3 61 GLY 61 61 61 GLY GLY X . n C 3 62 SER 62 62 62 SER SER X . n C 3 63 ASP 63 63 63 ASP ASP X . n C 3 64 SER 64 64 64 SER SER X . n C 3 65 LYS 65 65 65 LYS LYS X . n C 3 66 GLY 66 66 66 GLY GLY X . n C 3 67 ARG 67 67 67 ARG ARG X . n C 3 68 ARG 68 68 68 ARG ARG X . n C 3 69 GLN 69 69 69 GLN GLN X . n C 3 70 TYR 70 70 70 TYR TYR X . n C 3 71 PHE 71 71 71 PHE PHE X . n C 3 72 TYR 72 72 72 TYR TYR X . n C 3 73 GLY 73 73 73 GLY GLY X . n C 3 74 LYS 74 74 74 LYS LYS X . n C 3 75 MET 75 75 75 MET MET X . n C 3 76 HIS 76 76 76 HIS HIS X . n C 3 77 VAL 77 77 77 VAL VAL X . n C 3 78 GLN 78 78 78 GLN GLN X . n C 3 79 ASN 79 79 79 ASN ASN X . n C 3 80 ARG 80 80 80 ARG ARG X . n C 3 81 ASN 81 81 81 ASN ASN X . n C 3 82 ALA 82 82 82 ALA ALA X . n C 3 83 LYS 83 83 83 LYS LYS X . n C 3 84 ARG 84 84 84 ARG ARG X . n C 3 85 ASP 85 85 85 ASP ASP X . n C 3 86 ARG 86 86 86 ARG ARG X . n C 3 87 ILE 87 87 87 ILE ILE X . n C 3 88 PHE 88 88 88 PHE PHE X . n C 3 89 VAL 89 89 89 VAL VAL X . n C 3 90 ARG 90 90 90 ARG ARG X . n C 3 91 VAL 91 91 91 VAL VAL X . n C 3 92 TYR 92 92 92 TYR TYR X . n C 3 93 ASN 93 93 93 ASN ASN X . n C 3 94 VAL 94 94 94 VAL VAL X . n C 3 95 MET 95 95 95 MET MET X . n C 3 96 LYS 96 96 96 LYS LYS X . n C 3 97 ARG 97 97 97 ARG ARG X . n C 3 98 ILE 98 98 98 ILE ILE X . n C 3 99 ASN 99 99 99 ASN ASN X . n C 3 100 SER 100 100 100 SER SER X . n C 3 101 PHE 101 101 101 PHE PHE X . n C 3 102 ILE 102 102 102 ILE ILE X . n C 3 103 ASN 103 103 103 ASN ASN X . n C 3 104 LYS 104 104 104 LYS LYS X . n C 3 105 ASN 105 105 105 ASN ASN X . n C 3 106 ILE 106 106 106 ILE ILE X . n C 3 107 LYS 107 107 107 LYS LYS X . n C 3 108 LYS 108 108 108 LYS LYS X . n C 3 109 SER 109 109 109 SER SER X . n C 3 110 SER 110 110 110 SER SER X . n C 3 111 THR 111 111 111 THR THR X . n C 3 112 ASP 112 112 112 ASP ASP X . n C 3 113 SER 113 113 113 SER SER X . n C 3 114 ASN 114 114 114 ASN ASN X . n C 3 115 TYR 115 115 115 TYR TYR X . n C 3 116 GLN 116 116 116 GLN GLN X . n C 3 117 LEU 117 117 117 LEU LEU X . n C 3 118 ALA 118 118 118 ALA ALA X . n C 3 119 VAL 119 119 119 VAL VAL X . n C 3 120 PHE 120 120 120 PHE PHE X . n C 3 121 MET 121 121 121 MET MET X . n C 3 122 LEU 122 122 122 LEU LEU X . n C 3 123 MET 123 123 123 MET MET X . n C 3 124 GLU 124 124 124 GLU GLU X . n C 3 125 THR 125 125 125 THR THR X . n C 3 126 MET 126 126 126 MET MET X . n C 3 127 PHE 127 127 127 PHE PHE X . n C 3 128 PHE 128 128 128 PHE PHE X . n C 3 129 ILE 129 129 129 ILE ILE X . n C 3 130 ARG 130 130 130 ARG ARG X . n C 3 131 PHE 131 131 131 PHE PHE X . n C 3 132 GLY 132 132 132 GLY GLY X . n C 3 133 LYS 133 133 133 LYS LYS X . n C 3 134 MET 134 134 134 MET MET X . n C 3 135 LYS 135 135 135 LYS LYS X . n C 3 136 TYR 136 136 136 TYR TYR X . n C 3 137 LEU 137 137 137 LEU LEU X . n C 3 138 LYS 138 138 138 LYS LYS X . n C 3 139 GLU 139 139 139 GLU GLU X . n C 3 140 ASN 140 140 140 ASN ASN X . n C 3 141 GLU 141 141 141 GLU GLU X . n C 3 142 THR 142 142 142 THR THR X . n C 3 143 VAL 143 143 143 VAL VAL X . n C 3 144 GLY 144 144 144 GLY GLY X . n C 3 145 LEU 145 145 145 LEU LEU X . n C 3 146 LEU 146 146 146 LEU LEU X . n C 3 147 THR 147 147 147 THR THR X . n C 3 148 LEU 148 148 148 LEU LEU X . n C 3 149 LYS 149 149 149 LYS LYS X . n C 3 150 ASN 150 150 150 ASN ASN X . n C 3 151 LYS 151 151 151 LYS LYS X . n C 3 152 HIS 152 152 152 HIS HIS X . n C 3 153 ILE 153 153 153 ILE ILE X . n C 3 154 GLU 154 154 154 GLU GLU X . n C 3 155 ILE 155 155 155 ILE ILE X . n C 3 156 SER 156 156 156 SER SER X . n C 3 157 PRO 157 157 157 PRO PRO X . n C 3 158 ASP 158 158 158 ASP ASP X . n C 3 159 LYS 159 159 159 LYS LYS X . n C 3 160 ILE 160 160 160 ILE ILE X . n C 3 161 VAL 161 161 161 VAL VAL X . n C 3 162 ILE 162 162 162 ILE ILE X . n C 3 163 LYS 163 163 163 LYS LYS X . n C 3 164 PHE 164 164 164 PHE PHE X . n C 3 165 VAL 165 165 165 VAL VAL X . n C 3 166 GLY 166 166 166 GLY GLY X . n C 3 167 LYS 167 167 167 LYS LYS X . n C 3 168 ASP 168 168 168 ASP ASP X . n C 3 169 LYS 169 169 169 LYS LYS X . n C 3 170 VAL 170 170 170 VAL VAL X . n C 3 171 SER 171 171 171 SER SER X . n C 3 172 HIS 172 172 172 HIS HIS X . n C 3 173 GLU 173 173 173 GLU GLU X . n C 3 174 PHE 174 174 174 PHE PHE X . n C 3 175 VAL 175 175 175 VAL VAL X . n C 3 176 VAL 176 176 176 VAL VAL X . n C 3 177 HIS 177 177 177 HIS HIS X . n C 3 178 LYS 178 178 178 LYS LYS X . n C 3 179 SER 179 179 179 SER SER X . n C 3 180 ASN 180 180 180 ASN ASN X . n C 3 181 ARG 181 181 181 ARG ARG X . n C 3 182 LEU 182 182 182 LEU LEU X . n C 3 183 TYR 183 183 183 TYR TYR X . n C 3 184 LYS 184 184 184 LYS LYS X . n C 3 185 PRO 185 185 185 PRO PRO X . n C 3 186 LEU 186 186 186 LEU LEU X . n C 3 187 LEU 187 187 187 LEU LEU X . n C 3 188 LYS 188 188 188 LYS LYS X . n C 3 189 LEU 189 189 189 LEU LEU X . n C 3 190 THR 190 190 190 THR THR X . n C 3 191 ASP 191 191 191 ASP ASP X . n C 3 192 ASP 192 192 192 ASP ASP X . n C 3 193 SER 193 193 193 SER SER X . n C 3 194 SER 194 194 194 SER SER X . n C 3 195 PRO 195 195 195 PRO PRO X . n C 3 196 GLU 196 196 196 GLU GLU X . n C 3 197 GLU 197 197 197 GLU GLU X . n C 3 198 PHE 198 198 198 PHE PHE X . n C 3 199 LEU 199 199 199 LEU LEU X . n C 3 200 PHE 200 200 200 PHE PHE X . n C 3 201 ASN 201 201 201 ASN ASN X . n C 3 202 LYS 202 202 202 LYS LYS X . n C 3 203 LEU 203 203 203 LEU LEU X . n C 3 204 SER 204 204 204 SER SER X . n C 3 205 GLU 205 205 205 GLU GLU X . n C 3 206 ARG 206 206 206 ARG ARG X . n C 3 207 LYS 207 207 207 LYS LYS X . n C 3 208 VAL 208 208 208 VAL VAL X . n C 3 209 TYR 209 209 209 TYR TYR X . n C 3 210 GLU 210 210 210 GLU GLU X . n C 3 211 SER 211 211 211 SER SER X . n C 3 212 ILE 212 212 212 ILE ILE X . n C 3 213 LYS 213 213 213 LYS LYS X . n C 3 214 GLN 214 214 214 GLN GLN X . n C 3 215 PHE 215 215 215 PHE PHE X . n C 3 216 GLY 216 216 216 GLY GLY X . n C 3 217 ILE 217 217 217 ILE ILE X . n C 3 218 ARG 218 218 218 ARG ARG X . n C 3 219 ILE 219 219 219 ILE ILE X . n C 3 220 LYS 220 220 220 LYS LYS X . n C 3 221 ASP 221 221 221 ASP ASP X . n C 3 222 LEU 222 222 222 LEU LEU X . n C 3 223 ARG 223 223 223 ARG ARG X . n C 3 224 THR 224 224 224 THR THR X . n C 3 225 TYR 225 225 225 TYR TYR X . n C 3 226 GLY 226 226 226 GLY GLY X . n C 3 227 VAL 227 227 227 VAL VAL X . n C 3 228 ASN 228 228 228 ASN ASN X . n C 3 229 TYR 229 229 229 TYR TYR X . n C 3 230 THR 230 230 230 THR THR X . n C 3 231 PHE 231 231 231 PHE PHE X . n C 3 232 LEU 232 232 232 LEU LEU X . n C 3 233 TYR 233 233 233 TYR TYR X . n C 3 234 ASN 234 234 234 ASN ASN X . n C 3 235 PHE 235 235 235 PHE PHE X . n C 3 236 TRP 236 236 236 TRP TRP X . n C 3 237 THR 237 237 237 THR THR X . n C 3 238 ASN 238 238 238 ASN ASN X . n C 3 239 VAL 239 239 239 VAL VAL X . n C 3 240 LYS 240 240 240 LYS LYS X . n C 3 241 SER 241 241 241 SER SER X . n C 3 242 ILE 242 242 242 ILE ILE X . n C 3 243 SER 243 243 243 SER SER X . n C 3 244 PRO 244 244 244 PRO PRO X . n C 3 245 LEU 245 245 245 LEU LEU X . n C 3 246 PRO 246 246 246 PRO PRO X . n C 3 247 SER 247 247 247 SER SER X . n C 3 248 PRO 248 248 248 PRO PRO X . n C 3 249 LYS 249 249 249 LYS LYS X . n C 3 250 LYS 250 250 250 LYS LYS X . n C 3 251 LEU 251 251 251 LEU LEU X . n C 3 252 ILE 252 252 252 ILE ILE X . n C 3 253 ALA 253 253 253 ALA ALA X . n C 3 254 LEU 254 254 254 LEU LEU X . n C 3 255 THR 255 255 255 THR THR X . n C 3 256 ILE 256 256 256 ILE ILE X . n C 3 257 LYS 257 257 257 LYS LYS X . n C 3 258 GLN 258 258 258 GLN GLN X . n C 3 259 THR 259 259 259 THR THR X . n C 3 260 ALA 260 260 260 ALA ALA X . n C 3 261 GLU 261 261 261 GLU GLU X . n C 3 262 VAL 262 262 262 VAL VAL X . n C 3 263 VAL 263 263 263 VAL VAL X . n C 3 264 GLY 264 264 264 GLY GLY X . n C 3 265 HIS 265 265 265 HIS HIS X . n C 3 266 THR 266 266 266 THR THR X . n C 3 267 PRO 267 267 267 PRO PRO X . n C 3 268 SER 268 268 268 SER SER X . n C 3 269 ILE 269 269 269 ILE ILE X . n C 3 270 SER 270 270 270 SER SER X . n C 3 271 LYS 271 271 271 LYS LYS X . n C 3 272 ARG 272 272 272 ARG ARG X . n C 3 273 ALA 273 273 273 ALA ALA X . n C 3 274 PTR 274 274 274 PTR PTR X . n C 3 275 MET 275 275 275 MET MET X . n C 3 276 ALA 276 276 276 ALA ALA X . n C 3 277 THR 277 277 277 THR THR X . n C 3 278 THR 278 278 278 THR THR X . n C 3 279 ILE 279 279 279 ILE ILE X . n C 3 280 LEU 280 280 280 LEU LEU X . n C 3 281 GLU 281 281 281 GLU GLU X . n C 3 282 MET 282 282 282 MET MET X . n C 3 283 VAL 283 283 283 VAL VAL X . n C 3 284 LYS 284 284 284 LYS LYS X . n C 3 285 ASP 285 285 285 ASP ASP X . n C 3 286 LYS 286 286 286 LYS LYS X . n C 3 287 ASN 287 287 287 ASN ASN X . n C 3 288 PHE 288 288 288 PHE PHE X . n C 3 289 LEU 289 289 289 LEU LEU X . n C 3 290 ASP 290 290 290 ASP ASP X . n C 3 291 VAL 291 291 291 VAL VAL X . n C 3 292 VAL 292 292 292 VAL VAL X . n C 3 293 SER 293 293 293 SER SER X . n C 3 294 LYS 294 294 294 LYS LYS X . n C 3 295 THR 295 295 295 THR THR X . n C 3 296 THR 296 296 296 THR THR X . n C 3 297 PHE 297 297 297 PHE PHE X . n C 3 298 ASP 298 298 298 ASP ASP X . n C 3 299 GLU 299 299 299 GLU GLU X . n C 3 300 PHE 300 300 300 PHE PHE X . n C 3 301 LEU 301 301 301 LEU LEU X . n C 3 302 SER 302 302 302 SER SER X . n C 3 303 ILE 303 303 303 ILE ILE X . n C 3 304 VAL 304 304 304 VAL VAL X . n C 3 305 VAL 305 305 305 VAL VAL X . n C 3 306 ASP 306 306 306 ASP ASP X . n C 3 307 HIS 307 307 307 HIS HIS X . n C 3 308 VAL 308 308 308 VAL VAL X . n C 3 309 LYS 309 309 309 LYS LYS X . n C 3 310 SER 310 310 310 SER SER X . n C 3 311 SER 311 311 311 SER SER X . n C 3 312 THR 312 312 312 THR THR X . n C 3 313 ASP 313 313 313 ASP ASP X . n C 3 314 GLY 314 314 314 GLY GLY X . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 HOH 1 27 27 HOH HOH Y . D 4 HOH 2 36 36 HOH HOH Y . D 4 HOH 3 44 44 HOH HOH Y . D 4 HOH 4 46 46 HOH HOH Y . E 4 HOH 1 13 13 HOH HOH Z . F 4 HOH 1 315 1 HOH HOH X . F 4 HOH 2 316 2 HOH HOH X . F 4 HOH 3 317 3 HOH HOH X . F 4 HOH 4 318 4 HOH HOH X . F 4 HOH 5 319 5 HOH HOH X . F 4 HOH 6 320 6 HOH HOH X . F 4 HOH 7 321 7 HOH HOH X . F 4 HOH 8 322 8 HOH HOH X . F 4 HOH 9 323 9 HOH HOH X . F 4 HOH 10 324 10 HOH HOH X . F 4 HOH 11 325 11 HOH HOH X . F 4 HOH 12 326 12 HOH HOH X . F 4 HOH 13 327 14 HOH HOH X . F 4 HOH 14 328 15 HOH HOH X . F 4 HOH 15 329 16 HOH HOH X . F 4 HOH 16 330 17 HOH HOH X . F 4 HOH 17 331 18 HOH HOH X . F 4 HOH 18 332 19 HOH HOH X . F 4 HOH 19 333 20 HOH HOH X . F 4 HOH 20 334 21 HOH HOH X . F 4 HOH 21 335 22 HOH HOH X . F 4 HOH 22 336 23 HOH HOH X . F 4 HOH 23 337 24 HOH HOH X . F 4 HOH 24 338 25 HOH HOH X . F 4 HOH 25 339 26 HOH HOH X . F 4 HOH 26 340 28 HOH HOH X . F 4 HOH 27 341 29 HOH HOH X . F 4 HOH 28 342 30 HOH HOH X . F 4 HOH 29 343 31 HOH HOH X . F 4 HOH 30 344 32 HOH HOH X . F 4 HOH 31 345 33 HOH HOH X . F 4 HOH 32 346 34 HOH HOH X . F 4 HOH 33 347 35 HOH HOH X . F 4 HOH 34 348 37 HOH HOH X . F 4 HOH 35 349 38 HOH HOH X . F 4 HOH 36 350 39 HOH HOH X . F 4 HOH 37 351 40 HOH HOH X . F 4 HOH 38 352 41 HOH HOH X . F 4 HOH 39 353 42 HOH HOH X . F 4 HOH 40 354 43 HOH HOH X . F 4 HOH 41 355 45 HOH HOH X . F 4 HOH 42 356 47 HOH HOH X . F 4 HOH 43 357 48 HOH HOH X . F 4 HOH 44 358 49 HOH HOH X . F 4 HOH 45 359 50 HOH HOH X . F 4 HOH 46 360 51 HOH HOH X . F 4 HOH 47 361 52 HOH HOH X . F 4 HOH 48 362 53 HOH HOH X . F 4 HOH 49 363 54 HOH HOH X . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id C _pdbx_struct_mod_residue.label_comp_id PTR _pdbx_struct_mod_residue.label_seq_id 274 _pdbx_struct_mod_residue.auth_asym_id X _pdbx_struct_mod_residue.auth_comp_id PTR _pdbx_struct_mod_residue.auth_seq_id 274 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id TYR _pdbx_struct_mod_residue.details O-PHOSPHOTYROSINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id X _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 327 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id F _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-08-15 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 1 4 2021-10-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Refinement description' 4 3 'Structure model' 'Version format compliance' 5 4 'Structure model' 'Refinement description' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' database_2 3 5 'Structure model' struct_conn 4 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 5 'Structure model' '_struct_ref_seq_dif.details' # loop_ _diffrn_reflns.diffrn_id _diffrn_reflns.pdbx_d_res_high _diffrn_reflns.pdbx_d_res_low _diffrn_reflns.pdbx_number_obs _diffrn_reflns.pdbx_Rmerge_I_obs _diffrn_reflns.pdbx_Rsym_value _diffrn_reflns.pdbx_chi_squared _diffrn_reflns.av_sigmaI_over_netI _diffrn_reflns.pdbx_redundancy _diffrn_reflns.pdbx_percent_possible_obs _diffrn_reflns.number _diffrn_reflns.pdbx_observed_criterion _diffrn_reflns.limit_h_max _diffrn_reflns.limit_h_min _diffrn_reflns.limit_k_max _diffrn_reflns.limit_k_min _diffrn_reflns.limit_l_max _diffrn_reflns.limit_l_min 1 2.900 50.000 11747 0.069 ? 1.53 15.70 4.30 97.50 72121 ? ? ? ? ? ? ? 2 2.900 50.000 11773 0.071 ? 1.53 15.70 4.30 97.70 74536 ? ? ? ? ? ? ? 3 2.900 50.000 11768 0.068 ? 1.41 15.30 4.30 97.70 74320 ? ? ? ? ? ? ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 6.63 50.00 ? ? 0.051 ? 2.144 4.10 90.90 1 5.27 6.63 ? ? 0.068 ? 2.382 4.30 96.00 1 4.60 5.27 ? ? 0.061 ? 2.050 4.30 97.10 1 4.18 4.60 ? ? 0.061 ? 1.796 4.30 97.50 1 3.88 4.18 ? ? 0.071 ? 1.796 4.20 98.10 1 3.65 3.88 ? ? 0.082 ? 1.591 4.30 98.60 1 3.47 3.65 ? ? 0.094 ? 1.466 4.30 98.80 1 3.32 3.47 ? ? 0.115 ? 1.256 4.30 98.60 1 3.19 3.32 ? ? 0.146 ? 1.111 4.30 98.90 1 3.08 3.19 ? ? 0.217 ? 1.001 4.40 98.50 1 2.99 3.08 ? ? 0.294 ? 0.922 4.30 99.20 1 2.90 2.99 ? ? 0.335 ? 0.873 4.30 98.70 2 6.63 50.00 ? ? 0.052 ? 2.106 4.10 91.50 2 5.27 6.63 ? ? 0.067 ? 2.279 4.30 96.10 2 4.60 5.27 ? ? 0.061 ? 2.010 4.30 97.10 2 4.18 4.60 ? ? 0.062 ? 1.792 4.30 97.70 2 3.88 4.18 ? ? 0.072 ? 1.811 4.20 98.20 2 3.65 3.88 ? ? 0.084 ? 1.597 4.30 98.90 2 3.47 3.65 ? ? 0.098 ? 1.531 4.30 98.80 2 3.32 3.47 ? ? 0.118 ? 1.284 4.30 98.80 2 3.19 3.32 ? ? 0.152 ? 1.147 4.30 99.10 2 3.08 3.19 ? ? 0.216 ? 0.998 4.40 98.80 2 2.99 3.08 ? ? 0.298 ? 0.923 4.30 99.40 2 2.90 2.99 ? ? 0.347 ? 0.910 4.30 99.00 3 6.63 50.00 ? ? 0.046 ? 1.800 4.10 91.60 3 5.27 6.63 ? ? 0.063 ? 1.945 4.30 96.00 3 4.60 5.27 ? ? 0.058 ? 1.775 4.30 97.00 3 4.18 4.60 ? ? 0.059 ? 1.645 4.30 97.40 3 3.88 4.18 ? ? 0.070 ? 1.692 4.20 98.20 3 3.65 3.88 ? ? 0.083 ? 1.523 4.30 98.80 3 3.47 3.65 ? ? 0.096 ? 1.419 4.30 98.80 3 3.32 3.47 ? ? 0.118 ? 1.258 4.30 98.90 3 3.19 3.32 ? ? 0.153 ? 1.117 4.30 99.10 3 3.08 3.19 ? ? 0.225 ? 0.994 4.40 98.80 3 2.99 3.08 ? ? 0.307 ? 0.914 4.30 99.30 3 2.90 2.99 ? ? 0.357 ? 0.887 4.30 99.00 # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -9.5229 -2.6204 14.7187 0.4163 -0.1459 0.1603 -0.3041 0.1107 -0.1391 8.0003 10.4924 6.5469 2.6217 -2.1735 2.3476 -0.2087 -0.1824 0.3911 0.0486 -1.1335 0.4188 0.0759 1.7735 -0.4414 'X-RAY DIFFRACTION' 2 ? refined 9.1895 29.0344 12.2459 -0.2903 -0.2080 -0.3651 -0.0979 -0.0619 0.0228 5.8249 3.7414 4.7873 -0.3012 -0.7778 -0.2377 -0.0249 -0.2104 0.2353 0.1765 0.2524 -0.1546 -0.0167 -0.2773 0.3780 'X-RAY DIFFRACTION' 3 ? refined -8.9327 17.4861 9.3722 -0.1359 -0.1391 -0.0926 -0.1469 0.0225 -0.1020 3.6644 3.7470 6.4753 -0.5193 0.7915 -0.3929 0.0550 0.1976 -0.2526 0.2887 -0.2132 0.8872 -0.3867 0.2026 -0.6769 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 X 1 X 74 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 X 75 X 314 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 Y 501 Y 511 ? . . . . ? # loop_ _pdbx_phasing_MAD_set_site.id _pdbx_phasing_MAD_set_site.atom_type_symbol _pdbx_phasing_MAD_set_site.occupancy _pdbx_phasing_MAD_set_site.fract_x _pdbx_phasing_MAD_set_site.fract_y _pdbx_phasing_MAD_set_site.fract_z _pdbx_phasing_MAD_set_site.b_iso 1 Se 0.556 0.191 0.221 0.043 60.000 2 Se 0.621 0.030 0.278 0.098 60.000 3 Se 0.699 0.145 0.282 0.101 60.000 4 Se 0.575 0.221 0.148 0.155 60.000 5 Se 0.547 0.821 0.226 0.083 60.000 6 Se 0.425 0.362 0.123 0.112 60.000 7 Se 0.449 0.078 0.234 0.015 60.000 8 Se 0.384 0.144 0.009 0.086 60.000 9 Se 0.278 0.425 0.487 0.053 60.000 # loop_ _pdbx_phasing_MAD_shell.d_res_low _pdbx_phasing_MAD_shell.d_res_high _pdbx_phasing_MAD_shell.reflns _pdbx_phasing_MAD_shell.fom 20.00 9.87 571 0.550 9.87 6.53 900 0.620 6.53 5.20 1129 0.550 5.20 4.44 1338 0.470 4.44 3.94 1496 0.430 3.94 3.58 1637 0.400 3.58 3.30 1762 0.330 3.30 3.08 1876 0.250 # _phasing.method MAD # _phasing_MAD.entry_id 2H7F _phasing_MAD.pdbx_d_res_high 2.98 _phasing_MAD.pdbx_d_res_low 20.00 _phasing_MAD.pdbx_reflns 10709 _phasing_MAD.pdbx_fom 0.420 # _phasing_MAD_clust.id 1 _phasing_MAD_clust.expt_id '3 wavelength' _phasing_MAD_clust.number_set ? # _phasing_MAD_expt.id '3 wavelength' _phasing_MAD_expt.mean_fom ? # loop_ _phasing_MAD_set.clust_id _phasing_MAD_set.expt_id _phasing_MAD_set.set_id _phasing_MAD_set.wavelength _phasing_MAD_set.pdbx_f_prime_refined _phasing_MAD_set.pdbx_f_double_prime_refined 1 '3 wavelength' 1 0.9793 -8.35 4.51 1 '3 wavelength' 2 0.9795 -10.18 4.36 1 '3 wavelength' 3 0.9639 -5.26 3.21 # loop_ _phasing_set.id _phasing_set.pdbx_d_res_high _phasing_set.pdbx_d_res_low 1 . . 2 . . 3 . . # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 SOLVE 2.03 20-Sept-2002 package 'Tom Terwilliger' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 3 REFMAC 5.2.0005 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 4 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 5 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" Y DT 502 ? ? "C3'" Y DT 502 ? ? 1.375 1.419 -0.044 0.006 N 2 1 "O3'" Z DG 521 ? ? "C3'" Z DG 521 ? ? 1.378 1.419 -0.041 0.006 N 3 1 "O3'" Z DC 524 ? ? "C3'" Z DC 524 ? ? 1.382 1.419 -0.037 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" Y DT 501 ? ? "C1'" Y DT 501 ? ? N1 Y DT 501 ? ? 113.63 108.30 5.33 0.30 N 2 1 "C5'" Y DT 504 ? ? "C4'" Y DT 504 ? ? "O4'" Y DT 504 ? ? 117.28 109.80 7.48 1.10 N 3 1 "O4'" Y DT 504 ? ? "C1'" Y DT 504 ? ? N1 Y DT 504 ? ? 113.62 108.30 5.32 0.30 N 4 1 "O5'" Z DA 516 ? ? "C5'" Z DA 516 ? ? "C4'" Z DA 516 ? ? 103.24 109.40 -6.16 0.80 N 5 1 "O4'" Z DA 516 ? ? "C1'" Z DA 516 ? ? N9 Z DA 516 ? ? 103.30 108.00 -4.70 0.70 N 6 1 "C1'" Z DA 517 ? B "O4'" Z DA 517 ? B "C4'" Z DA 517 ? B 103.40 110.10 -6.70 1.00 N 7 1 "C3'" Z DA 517 ? B "O3'" Z DA 517 ? B P Z DT 518 ? ? 129.32 119.70 9.62 1.20 Y 8 1 "O4'" Z DA 519 ? ? "C1'" Z DA 519 ? ? N9 Z DA 519 ? ? 103.56 108.00 -4.44 0.70 N 9 1 "O4'" Z DA 520 ? ? "C1'" Z DA 520 ? ? N9 Z DA 520 ? ? 114.35 108.30 6.05 0.30 N 10 1 "O4'" Z DG 522 ? ? "C1'" Z DG 522 ? ? N9 Z DG 522 ? ? 110.51 108.30 2.21 0.30 N 11 1 C2 Z DG 522 ? ? N3 Z DG 522 ? ? C4 Z DG 522 ? ? 115.15 111.90 3.25 0.50 N 12 1 C5 Z DG 522 ? ? C6 Z DG 522 ? ? N1 Z DG 522 ? ? 115.26 111.50 3.76 0.50 N 13 1 "O4'" Z DC 527 ? ? "C1'" Z DC 527 ? ? N1 Z DC 527 ? ? 110.87 108.30 2.57 0.30 N 14 1 "O4'" Z DA 528 ? ? "C1'" Z DA 528 ? ? N9 Z DA 528 ? ? 112.29 108.30 3.99 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS X 7 ? ? -165.46 118.30 2 1 ASN X 16 ? ? -108.52 40.90 3 1 ASN X 19 ? ? 60.36 74.80 4 1 ASN X 25 ? ? -39.33 127.95 5 1 ARG X 56 ? ? -145.44 -156.84 6 1 THR X 111 ? ? -106.23 40.45 7 1 TYR X 183 ? ? -57.33 -71.32 8 1 SER X 194 ? ? -159.09 88.14 9 1 SER X 243 ? ? -32.62 137.03 10 1 PRO X 244 ? ? 7.82 -75.91 11 1 LEU X 245 ? ? 169.52 139.79 12 1 PTR X 274 ? ? -124.28 -50.29 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 SER _pdbx_validate_peptide_omega.auth_asym_id_1 X _pdbx_validate_peptide_omega.auth_seq_id_1 243 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 PRO _pdbx_validate_peptide_omega.auth_asym_id_2 X _pdbx_validate_peptide_omega.auth_seq_id_2 244 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -148.24 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2H7F 'double helix' 2H7F 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 2 1_555 B DA 14 1_555 0.248 0.186 -0.056 -0.477 -27.158 12.135 1 Y_DT502:DA528_Z Y 502 ? Z 528 ? ? ? 1 A DG 3 1_555 B DC 13 1_555 -0.277 -0.022 -0.235 -4.816 -21.633 5.553 2 Y_DG503:DC527_Z Y 503 ? Z 527 ? 19 1 1 A DT 4 1_555 B DA 12 1_555 -0.074 0.205 -0.385 3.819 -7.338 0.987 3 Y_DT504:DA526_Z Y 504 ? Z 526 ? 20 1 1 A DC 5 1_555 B DG 11 1_555 0.144 -0.319 -0.095 -2.016 -2.291 -1.123 4 Y_DC505:DG525_Z Y 505 ? Z 525 ? 19 1 1 A DG 6 1_555 B DC 10 1_555 -0.207 -0.200 -0.585 -4.013 -7.220 0.521 5 Y_DG506:DC524_Z Y 506 ? Z 524 ? 19 1 1 A DC 7 1_555 B DG 9 1_555 0.232 -0.144 0.095 5.601 -8.361 -1.185 6 Y_DC507:DG523_Z Y 507 ? Z 523 ? 19 1 1 A DC 8 1_555 B DG 8 1_555 0.192 -0.248 -0.138 11.264 -2.355 -4.097 7 Y_DC508:DG522_Z Y 508 ? Z 522 ? 19 1 1 A DC 9 1_555 B DG 7 1_555 0.165 -0.059 -0.075 13.841 -13.523 2.649 8 Y_DC509:DG521_Z Y 509 ? Z 521 ? 19 1 1 A DT 10 1_555 B DA 6 1_555 -0.186 -0.173 0.170 -12.655 -2.830 1.753 9 Y_DT510:DA520_Z Y 510 ? Z 520 ? 20 1 1 A DT 11 1_555 B DA 5 1_555 -0.035 -0.253 -0.152 0.091 -7.698 5.444 10 Y_DT511:DA519_Z Y 511 ? Z 519 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 2 1_555 B DA 14 1_555 A DG 3 1_555 B DC 13 1_555 -0.854 1.654 3.453 -6.530 8.684 32.278 1.236 0.263 3.852 15.096 11.352 34.011 1 YY_DT502DG503:DC527DA528_ZZ Y 502 ? Z 528 ? Y 503 ? Z 527 ? 1 A DG 3 1_555 B DC 13 1_555 A DT 4 1_555 B DA 12 1_555 -0.069 -0.164 3.078 -2.700 -4.362 34.166 0.362 -0.279 3.071 -7.372 4.564 34.537 2 YY_DG503DT504:DA526DC527_ZZ Y 503 ? Z 527 ? Y 504 ? Z 526 ? 1 A DT 4 1_555 B DA 12 1_555 A DC 5 1_555 B DG 11 1_555 0.405 -0.189 3.436 -1.052 2.994 41.158 -0.606 -0.692 3.403 4.251 1.494 41.275 3 YY_DT504DC505:DG525DA526_ZZ Y 504 ? Z 526 ? Y 505 ? Z 525 ? 1 A DC 5 1_555 B DG 11 1_555 A DG 6 1_555 B DC 10 1_555 -0.691 0.419 3.532 2.123 6.387 31.835 -0.465 1.638 3.496 11.484 -3.816 32.521 4 YY_DC505DG506:DC524DG525_ZZ Y 505 ? Z 525 ? Y 506 ? Z 524 ? 1 A DG 6 1_555 B DC 10 1_555 A DC 7 1_555 B DG 9 1_555 -0.218 -0.082 3.104 -7.259 0.767 32.509 -0.265 -0.778 3.077 1.349 12.766 33.297 5 YY_DG506DC507:DG523DC524_ZZ Y 506 ? Z 524 ? Y 507 ? Z 523 ? 1 A DC 7 1_555 B DG 9 1_555 A DC 8 1_555 B DG 8 1_555 0.505 -0.485 3.340 1.897 -1.643 34.068 -0.558 -0.551 3.381 -2.799 -3.232 34.157 6 YY_DC507DC508:DG522DG523_ZZ Y 507 ? Z 523 ? Y 508 ? Z 522 ? 1 A DC 8 1_555 B DG 8 1_555 A DC 9 1_555 B DG 7 1_555 0.902 -0.955 3.145 0.287 7.636 34.094 -2.668 -1.463 2.878 12.824 -0.482 34.915 7 YY_DC508DC509:DG521DG522_ZZ Y 508 ? Z 522 ? Y 509 ? Z 521 ? 1 A DC 9 1_555 B DG 7 1_555 A DT 10 1_555 B DA 6 1_555 0.116 -0.922 4.108 0.916 -7.328 39.377 -0.271 -0.035 4.208 -10.761 -1.345 40.037 8 YY_DC509DT510:DA520DG521_ZZ Y 509 ? Z 521 ? Y 510 ? Z 520 ? 1 A DT 10 1_555 B DA 6 1_555 A DT 11 1_555 B DA 5 1_555 -0.343 -0.592 3.027 2.484 -4.333 30.450 -0.326 1.097 3.043 -8.181 -4.689 30.847 9 YY_DT510DT511:DA519DA520_ZZ Y 510 ? Z 520 ? Y 511 ? Z 519 ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #