HEADER OXIDOREDUCTASE 08-JUN-06 2H94 TITLE CRYSTAL STRUCTURE AND MECHANISM OF HUMAN LYSINE-SPECIFIC DEMETHYLASE-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSINE-SPECIFIC HISTONE DEMETHYLASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AMINE OXIDASE FLAVIN-CONTAINING DOMAIN PROTEIN 2, BRAF35- COMPND 5 HDAC COMPLEX PROTEIN BHC110; COMPND 6 EC: 1.-.-.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AOF2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS HISTONE DEMETHYLASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.STAVROPOULOS,G.BLOBEL,A.HOELZ REVDAT 5 14-FEB-24 2H94 1 REMARK REVDAT 4 18-OCT-17 2H94 1 REMARK REVDAT 3 24-FEB-09 2H94 1 VERSN REVDAT 2 18-JUL-06 2H94 1 JRNL REVDAT 1 04-JUL-06 2H94 0 JRNL AUTH P.STAVROPOULOS,G.BLOBEL,A.HOELZ JRNL TITL CRYSTAL STRUCTURE AND MECHANISM OF HUMAN LYSINE-SPECIFIC JRNL TITL 2 DEMETHYLASE-1. JRNL REF NAT.STRUCT.MOL.BIOL. V. 13 626 2006 JRNL REFN ISSN 1545-9993 JRNL PMID 16799558 JRNL DOI 10.1038/NSMB1113 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 88.8 REMARK 3 NUMBER OF REFLECTIONS : 42195 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.600 REMARK 3 FREE R VALUE TEST SET COUNT : 4087 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5077 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 20 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 82.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -18.70800 REMARK 3 B22 (A**2) : -18.70800 REMARK 3 B33 (A**2) : 37.41700 REMARK 3 B12 (A**2) : -22.92300 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.610 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 32.84 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : FAD_XPLOR_PAR.TXT REMARK 3 PARAMETER FILE 3 : CNS_TOPPAR:WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : CNS_TOPPAR:ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2H94 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1000038084. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0080, 1.2552, 1.2557 REMARK 200 MONOCHROMATOR : CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : BOS REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42195 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 9 % PEG 3350 200 MM DIAMMONIUM REMARK 280 TARTRATE 100 MM HEPES, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.24700 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 72.49400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 54.37050 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 90.61750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 18.12350 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 36.24700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 72.49400 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 90.61750 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 54.37050 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 18.12350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 467 REMARK 465 VAL A 468 REMARK 465 LYS A 469 REMARK 465 PRO A 470 REMARK 465 PRO A 471 REMARK 465 ARG A 472 REMARK 465 ASP A 473 REMARK 465 ILE A 474 REMARK 465 PRO A 784 REMARK 465 SER A 785 REMARK 465 ILE A 786 REMARK 465 PRO A 787 REMARK 465 GLY A 788 REMARK 465 ALA A 789 REMARK 465 PRO A 790 REMARK 465 GLN A 791 REMARK 465 PRO A 792 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 641 C - N - CA ANGL. DEV. = -11.7 DEGREES REMARK 500 PRO A 794 C - N - CA ANGL. DEV. = 11.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 197 104.81 -40.57 REMARK 500 ASP A 198 -3.51 42.13 REMARK 500 PRO A 203 -179.52 -56.72 REMARK 500 GLN A 204 -64.05 -92.56 REMARK 500 PHE A 210 -70.15 -48.60 REMARK 500 ASN A 224 75.24 -167.74 REMARK 500 GLN A 236 41.59 -74.93 REMARK 500 GLN A 237 6.32 -150.96 REMARK 500 ALA A 240 -64.83 -16.64 REMARK 500 PRO A 241 -94.12 -69.93 REMARK 500 TYR A 242 -70.29 -0.98 REMARK 500 ASN A 243 4.33 -63.08 REMARK 500 LYS A 271 91.85 60.12 REMARK 500 ALA A 309 33.12 -92.80 REMARK 500 ASP A 311 5.61 50.26 REMARK 500 ALA A 327 -63.27 -123.47 REMARK 500 ASP A 328 90.92 86.11 REMARK 500 MET A 332 -40.86 -141.98 REMARK 500 THR A 335 78.02 -65.95 REMARK 500 GLU A 364 -177.77 -61.68 REMARK 500 ALA A 365 26.59 -72.82 REMARK 500 ALA A 369 5.51 -67.58 REMARK 500 VAL A 370 103.08 54.50 REMARK 500 LYS A 372 -39.65 -31.07 REMARK 500 ASN A 403 15.97 47.03 REMARK 500 ASP A 425 -72.23 -76.01 REMARK 500 GLU A 426 -3.57 -58.71 REMARK 500 HIS A 430 -72.65 -76.11 REMARK 500 TRP A 431 -34.82 -39.28 REMARK 500 GLU A 477 -110.71 -83.15 REMARK 500 LEU A 511 -63.05 -109.40 REMARK 500 GLN A 554 -38.90 -11.97 REMARK 500 ASP A 557 0.20 -63.35 REMARK 500 GLU A 580 5.54 -54.55 REMARK 500 LEU A 586 -167.77 -61.08 REMARK 500 ASN A 587 9.06 28.12 REMARK 500 SER A 598 -126.20 -99.03 REMARK 500 THR A 607 -52.71 -147.35 REMARK 500 ARG A 608 45.36 -102.77 REMARK 500 SER A 609 131.88 -177.34 REMARK 500 THR A 610 69.32 -35.98 REMARK 500 SER A 611 -98.12 -146.78 REMARK 500 GLN A 612 21.58 105.80 REMARK 500 THR A 613 119.04 165.84 REMARK 500 PRO A 634 -67.09 -12.17 REMARK 500 PRO A 635 -154.95 -92.09 REMARK 500 VAL A 640 -89.90 -34.28 REMARK 500 PRO A 644 167.73 -34.08 REMARK 500 LYS A 647 -78.55 -55.40 REMARK 500 LEU A 659 124.30 175.70 REMARK 500 REMARK 500 THIS ENTRY HAS 67 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A 1 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 360 SG REMARK 620 2 CYS A 360 O 84.3 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 5000 DBREF 2H94 A 172 835 UNP O60341 LSD1_HUMAN 172 835 SEQRES 1 A 664 SER GLY VAL GLU GLY ALA ALA PHE GLN SER ARG LEU PRO SEQRES 2 A 664 HIS ASP ARG MET THR SER GLN GLU ALA ALA CYS PHE PRO SEQRES 3 A 664 ASP ILE ILE SER GLY PRO GLN GLN THR GLN LYS VAL PHE SEQRES 4 A 664 LEU PHE ILE ARG ASN ARG THR LEU GLN LEU TRP LEU ASP SEQRES 5 A 664 ASN PRO LYS ILE GLN LEU THR PHE GLU ALA THR LEU GLN SEQRES 6 A 664 GLN LEU GLU ALA PRO TYR ASN SER ASP THR VAL LEU VAL SEQRES 7 A 664 HIS ARG VAL HIS SER TYR LEU GLU ARG HIS GLY LEU ILE SEQRES 8 A 664 ASN PHE GLY ILE TYR LYS ARG ILE LYS PRO LEU PRO THR SEQRES 9 A 664 LYS LYS THR GLY LYS VAL ILE ILE ILE GLY SER GLY VAL SEQRES 10 A 664 SER GLY LEU ALA ALA ALA ARG GLN LEU GLN SER PHE GLY SEQRES 11 A 664 MET ASP VAL THR LEU LEU GLU ALA ARG ASP ARG VAL GLY SEQRES 12 A 664 GLY ARG VAL ALA THR PHE ARG LYS GLY ASN TYR VAL ALA SEQRES 13 A 664 ASP LEU GLY ALA MET VAL VAL THR GLY LEU GLY GLY ASN SEQRES 14 A 664 PRO MET ALA VAL VAL SER LYS GLN VAL ASN MET GLU LEU SEQRES 15 A 664 ALA LYS ILE LYS GLN LYS CYS PRO LEU TYR GLU ALA ASN SEQRES 16 A 664 GLY GLN ALA VAL PRO LYS GLU LYS ASP GLU MET VAL GLU SEQRES 17 A 664 GLN GLU PHE ASN ARG LEU LEU GLU ALA THR SER TYR LEU SEQRES 18 A 664 SER HIS GLN LEU ASP PHE ASN VAL LEU ASN ASN LYS PRO SEQRES 19 A 664 VAL SER LEU GLY GLN ALA LEU GLU VAL VAL ILE GLN LEU SEQRES 20 A 664 GLN GLU LYS HIS VAL LYS ASP GLU GLN ILE GLU HIS TRP SEQRES 21 A 664 LYS LYS ILE VAL LYS THR GLN GLU GLU LEU LYS GLU LEU SEQRES 22 A 664 LEU ASN LYS MET VAL ASN LEU LYS GLU LYS ILE LYS GLU SEQRES 23 A 664 LEU HIS GLN GLN TYR LYS GLU ALA SER GLU VAL LYS PRO SEQRES 24 A 664 PRO ARG ASP ILE THR ALA GLU PHE LEU VAL LYS SER LYS SEQRES 25 A 664 HIS ARG ASP LEU THR ALA LEU CYS LYS GLU TYR ASP GLU SEQRES 26 A 664 LEU ALA GLU THR GLN GLY LYS LEU GLU GLU LYS LEU GLN SEQRES 27 A 664 GLU LEU GLU ALA ASN PRO PRO SER ASP VAL TYR LEU SER SEQRES 28 A 664 SER ARG ASP ARG GLN ILE LEU ASP TRP HIS PHE ALA ASN SEQRES 29 A 664 LEU GLU PHE ALA ASN ALA THR PRO LEU SER THR LEU SER SEQRES 30 A 664 LEU LYS HIS TRP ASP GLN ASP ASP ASP PHE GLU PHE THR SEQRES 31 A 664 GLY SER HIS LEU THR VAL ARG ASN GLY TYR SER CYS VAL SEQRES 32 A 664 PRO VAL ALA LEU ALA GLU GLY LEU ASP ILE LYS LEU ASN SEQRES 33 A 664 THR ALA VAL ARG GLN VAL ARG TYR THR ALA SER GLY CYS SEQRES 34 A 664 GLU VAL ILE ALA VAL ASN THR ARG SER THR SER GLN THR SEQRES 35 A 664 PHE ILE TYR LYS CYS ASP ALA VAL LEU CYS THR LEU PRO SEQRES 36 A 664 LEU GLY VAL LEU LYS GLN GLN PRO PRO ALA VAL GLN PHE SEQRES 37 A 664 VAL PRO PRO LEU PRO GLU TRP LYS THR SER ALA VAL GLN SEQRES 38 A 664 ARG MET GLY PHE GLY ASN LEU ASN LYS VAL VAL LEU CYS SEQRES 39 A 664 PHE ASP ARG VAL PHE TRP ASP PRO SER VAL ASN LEU PHE SEQRES 40 A 664 GLY HIS VAL GLY SER THR THR ALA SER ARG GLY GLU LEU SEQRES 41 A 664 PHE LEU PHE TRP ASN LEU TYR LYS ALA PRO ILE LEU LEU SEQRES 42 A 664 ALA LEU VAL ALA GLY GLU ALA ALA GLY ILE MET GLU ASN SEQRES 43 A 664 ILE SER ASP ASP VAL ILE VAL GLY ARG CYS LEU ALA ILE SEQRES 44 A 664 LEU LYS GLY ILE PHE GLY SER SER ALA VAL PRO GLN PRO SEQRES 45 A 664 LYS GLU THR VAL VAL SER ARG TRP ARG ALA ASP PRO TRP SEQRES 46 A 664 ALA ARG GLY SER TYR SER TYR VAL ALA ALA GLY SER SER SEQRES 47 A 664 GLY ASN ASP TYR ASP LEU MET ALA GLN PRO ILE THR PRO SEQRES 48 A 664 GLY PRO SER ILE PRO GLY ALA PRO GLN PRO ILE PRO ARG SEQRES 49 A 664 LEU PHE PHE ALA GLY GLU HIS THR ILE ARG ASN TYR PRO SEQRES 50 A 664 ALA THR VAL HIS GLY ALA LEU LEU SER GLY LEU ARG GLU SEQRES 51 A 664 ALA GLY ARG ILE ALA ASP GLN PHE LEU GLY ALA MET TYR SEQRES 52 A 664 THR HET HG A 1 1 HET HG A 2 1 HET HG A 3 1 HET FAD A5000 53 HETNAM HG MERCURY (II) ION HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 2 HG 3(HG 2+) FORMUL 5 FAD C27 H33 N9 O15 P2 FORMUL 6 HOH *20(H2 O) HELIX 1 1 GLY A 173 SER A 181 1 9 HELIX 2 2 THR A 189 PHE A 196 1 8 HELIX 3 3 GLN A 205 ASP A 223 1 19 HELIX 4 4 THR A 230 GLN A 236 1 7 HELIX 5 5 PRO A 241 SER A 244 5 4 HELIX 6 6 ASP A 245 GLY A 260 1 16 HELIX 7 7 GLY A 287 PHE A 300 1 14 HELIX 8 8 PRO A 341 VAL A 349 1 9 HELIX 9 9 PRO A 371 GLN A 395 1 25 HELIX 10 10 SER A 407 ALA A 465 1 59 HELIX 11 11 LEU A 479 LEU A 508 1 30 HELIX 12 12 LEU A 508 ALA A 513 1 6 HELIX 13 13 SER A 522 ALA A 541 1 20 HELIX 14 14 ASP A 555 GLU A 559 5 5 HELIX 15 15 SER A 572 GLU A 580 1 9 HELIX 16 16 PRO A 626 LYS A 631 1 6 HELIX 17 17 PRO A 644 MET A 654 1 11 HELIX 18 18 GLU A 710 GLU A 716 1 7 HELIX 19 19 SER A 719 PHE A 735 1 17 HELIX 20 20 SER A 769 GLN A 778 1 10 HELIX 21 21 THR A 810 PHE A 829 1 20 SHEET 1 A 5 ASP A 583 LYS A 585 0 SHEET 2 A 5 ASP A 303 LEU A 307 1 N LEU A 306 O LYS A 585 SHEET 3 A 5 LYS A 280 ILE A 284 1 N VAL A 281 O ASP A 303 SHEET 4 A 5 ALA A 620 CYS A 623 1 O LEU A 622 N ILE A 282 SHEET 5 A 5 LEU A 796 PHE A 798 1 O PHE A 797 N CYS A 623 SHEET 1 B 2 ARG A 321 LYS A 322 0 SHEET 2 B 2 TYR A 325 VAL A 326 -1 O TYR A 325 N LYS A 322 SHEET 1 C 3 VAL A 333 THR A 335 0 SHEET 2 C 3 HIS A 564 VAL A 567 -1 O LEU A 565 N VAL A 334 SHEET 3 C 3 LEU A 353 LYS A 355 -1 N ALA A 354 O THR A 566 SHEET 1 D 6 LEU A 362 TYR A 363 0 SHEET 2 D 6 LEU A 677 HIS A 680 1 O GLY A 679 N TYR A 363 SHEET 3 D 6 LEU A 693 TRP A 695 -1 O PHE A 694 N PHE A 678 SHEET 4 D 6 ILE A 702 VAL A 707 -1 O LEU A 704 N TRP A 695 SHEET 5 D 6 ASN A 660 CYS A 665 -1 N VAL A 662 O ALA A 705 SHEET 6 D 6 GLU A 745 VAL A 748 -1 O VAL A 747 N VAL A 663 SHEET 1 E 2 VAL A 400 LEU A 401 0 SHEET 2 E 2 LYS A 404 PRO A 405 -1 O LYS A 404 N LEU A 401 SHEET 1 F 4 PHE A 614 CYS A 618 0 SHEET 2 F 4 CYS A 600 VAL A 605 -1 N VAL A 602 O TYR A 616 SHEET 3 F 4 ALA A 589 TYR A 595 -1 N ARG A 594 O GLU A 601 SHEET 4 F 4 GLN A 638 PHE A 639 1 O GLN A 638 N VAL A 593 SHEET 1 G 2 GLY A 655 PHE A 656 0 SHEET 2 G 2 SER A 762 TYR A 763 -1 O TYR A 763 N GLY A 655 LINK HG HG A 1 SG CYS A 360 1555 1555 2.71 LINK HG HG A 1 O CYS A 360 1555 1555 3.26 LINK HG HG A 3 SG CYS A 573 1555 1555 3.34 CISPEP 1 PRO A 634 PRO A 635 0 1.63 SITE 1 AC1 3 CYS A 360 LEU A 362 TRP A 531 SITE 1 AC2 1 GLN A 419 SITE 1 AC3 1 CYS A 573 SITE 1 AC4 30 GLY A 285 GLY A 287 VAL A 288 SER A 289 SITE 2 AC4 30 LEU A 307 GLU A 308 ALA A 309 ARG A 310 SITE 3 AC4 30 GLY A 315 ARG A 316 LEU A 329 GLY A 330 SITE 4 AC4 30 ALA A 331 MET A 332 VAL A 333 VAL A 590 SITE 5 AC4 30 THR A 624 LEU A 625 LEU A 659 TRP A 756 SITE 6 AC4 30 SER A 760 TYR A 761 GLY A 800 GLU A 801 SITE 7 AC4 30 THR A 810 VAL A 811 ALA A 814 HOH A5002 SITE 8 AC4 30 HOH A5005 HOH A5011 CRYST1 187.943 187.943 108.741 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005321 0.003072 0.000000 0.00000 SCALE2 0.000000 0.006144 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009196 0.00000