HEADER TRANSCRIPTION 09-JUN-06 2H99 TITLE CRYSTAL STRUCTURE OF THE EFFECTOR BINDING DOMAIN OF A BENM VARIANT TITLE 2 (R156H,T157S) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HTH-TYPE TRANSCRIPTIONAL REGULATOR BENM; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: EFFECTOR BINDING DOMAIN; COMPND 5 SYNONYM: BEN AND CAT OPERON TRANSCRIPTIONAL REGULATOR; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER SP.; SOURCE 3 ORGANISM_TAXID: 62977; SOURCE 4 STRAIN: ADP1; SOURCE 5 GENE: BENM, BENR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21B KEYWDS LTTR, BENM, TRANSCRIPTIONAL REGULATION, CATM, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR O.C.EZEZIKA,S.H.CRAVEN,E.L.NEIDLE,C.MOMANY REVDAT 7 30-AUG-23 2H99 1 REMARK REVDAT 6 20-OCT-21 2H99 1 REMARK SEQADV REVDAT 5 18-OCT-17 2H99 1 REMARK REVDAT 4 13-JUL-11 2H99 1 VERSN REVDAT 3 19-MAY-09 2H99 1 JRNL REVDAT 2 24-FEB-09 2H99 1 VERSN REVDAT 1 26-JUN-07 2H99 0 JRNL AUTH S.H.CRAVEN,O.C.EZEZIKA,S.HADDAD,R.A.HALL,C.MOMANY,E.L.NEIDLE JRNL TITL INDUCER RESPONSES OF BENM, A LYSR-TYPE TRANSCRIPTIONAL JRNL TITL 2 REGULATOR FROM ACINETOBACTER BAYLYI ADP1. JRNL REF MOL.MICROBIOL. V. 72 881 2009 JRNL REFN ISSN 0950-382X JRNL PMID 19400783 JRNL DOI 10.1111/J.1365-2958.2009.06686.X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH O.C.EZEZIKA,S.HADDAD,T.J.CLARK,E.L.NEIDLE,C.MOMANY REMARK 1 TITL DISTINCT EFFECTOR-BINDING SITES ENABLE SYNERGISTIC REMARK 1 TITL 2 TRANSCRIPTIONAL ACTIVATION BY BENM, A LYSR-TYPE REGULATOR REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 41766 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2216 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2974 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.2050 REMARK 3 BIN FREE R VALUE SET COUNT : 150 REMARK 3 BIN FREE R VALUE : 0.2740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3439 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 578 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.75000 REMARK 3 B22 (A**2) : -0.49000 REMARK 3 B33 (A**2) : -1.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.126 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.121 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.781 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3614 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3366 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4907 ; 1.085 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7831 ; 0.731 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 441 ; 5.735 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 158 ;36.318 ;23.544 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 631 ;11.159 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ; 9.713 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 549 ; 0.059 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3944 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 703 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 759 ; 0.194 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3672 ; 0.169 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1749 ; 0.169 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2079 ; 0.079 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 483 ; 0.113 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.115 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 42 ; 0.173 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 34 ; 0.146 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2862 ; 0.917 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 876 ; 0.087 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3573 ; 1.306 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1611 ; 2.654 ; 7.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1332 ; 3.512 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2H99 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1000038089. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44035 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.48400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ACCESSION CODE 2F97, BENM-EBD (HIGH PH) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PRECIPITANT: 0.015 M MAGNESIUM REMARK 280 ACETATE, 0.05 M SODIUM CACODLYLATE, 1.7 M AMMONIUM SULFATE REMARK 280 PROTEIN: 20 MM TRIS HCL, 0.5 M NACL, PH 7.9, 10% GLYCEROL EQUAL REMARK 280 VOLUMES MIXED, MICROBATCH UNDER OIL. THE GROWING CRYSTALLIZATION REMARK 280 SOLUTION WAS IN PH 6 AND THE PROTEIN SOLUTION WAS IN PH 7.9 REMARK 280 CONDITION, TEMPERATURE 288.2K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.46850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.74750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.25300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.74750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.46850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.25300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -100.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 LEU A 3 REMARK 465 ARG A 4 REMARK 465 HIS A 5 REMARK 465 LEU A 6 REMARK 465 ARG A 7 REMARK 465 TYR A 8 REMARK 465 PHE A 9 REMARK 465 VAL A 10 REMARK 465 ALA A 11 REMARK 465 VAL A 12 REMARK 465 VAL A 13 REMARK 465 GLU A 14 REMARK 465 GLU A 15 REMARK 465 GLN A 16 REMARK 465 SER A 17 REMARK 465 PHE A 18 REMARK 465 THR A 19 REMARK 465 LYS A 20 REMARK 465 ALA A 21 REMARK 465 ALA A 22 REMARK 465 ASP A 23 REMARK 465 LYS A 24 REMARK 465 LEU A 25 REMARK 465 CYS A 26 REMARK 465 ILE A 27 REMARK 465 ALA A 28 REMARK 465 GLN A 29 REMARK 465 PRO A 30 REMARK 465 PRO A 31 REMARK 465 LEU A 32 REMARK 465 SER A 33 REMARK 465 ARG A 34 REMARK 465 GLN A 35 REMARK 465 ILE A 36 REMARK 465 GLN A 37 REMARK 465 ASN A 38 REMARK 465 LEU A 39 REMARK 465 GLU A 40 REMARK 465 GLU A 41 REMARK 465 GLU A 42 REMARK 465 LEU A 43 REMARK 465 GLY A 44 REMARK 465 ILE A 45 REMARK 465 GLN A 46 REMARK 465 LEU A 47 REMARK 465 LEU A 48 REMARK 465 GLU A 49 REMARK 465 ARG A 50 REMARK 465 GLY A 51 REMARK 465 SER A 52 REMARK 465 ARG A 53 REMARK 465 PRO A 54 REMARK 465 VAL A 55 REMARK 465 LYS A 56 REMARK 465 THR A 57 REMARK 465 THR A 58 REMARK 465 PRO A 59 REMARK 465 GLU A 60 REMARK 465 GLY A 61 REMARK 465 HIS A 62 REMARK 465 PHE A 63 REMARK 465 PHE A 64 REMARK 465 TYR A 65 REMARK 465 GLN A 66 REMARK 465 TYR A 67 REMARK 465 ALA A 68 REMARK 465 ILE A 69 REMARK 465 LYS A 70 REMARK 465 LEU A 71 REMARK 465 LEU A 72 REMARK 465 SER A 73 REMARK 465 ASN A 74 REMARK 465 VAL A 75 REMARK 465 ASP A 76 REMARK 465 GLN A 77 REMARK 465 MET A 78 REMARK 465 VAL A 79 REMARK 465 SER A 80 REMARK 465 MET A 81 REMARK 465 THR A 82 REMARK 465 LYS A 83 REMARK 465 ARG A 84 REMARK 465 ILE A 85 REMARK 465 ALA A 86 REMARK 465 SER A 87 REMARK 465 VAL A 88 REMARK 465 GLU A 89 REMARK 465 LEU A 305 REMARK 465 GLU A 306 REMARK 465 HIS A 307 REMARK 465 HIS A 308 REMARK 465 HIS A 309 REMARK 465 HIS A 310 REMARK 465 HIS A 311 REMARK 465 HIS A 312 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 LEU B 3 REMARK 465 ARG B 4 REMARK 465 HIS B 5 REMARK 465 LEU B 6 REMARK 465 ARG B 7 REMARK 465 TYR B 8 REMARK 465 PHE B 9 REMARK 465 VAL B 10 REMARK 465 ALA B 11 REMARK 465 VAL B 12 REMARK 465 VAL B 13 REMARK 465 GLU B 14 REMARK 465 GLU B 15 REMARK 465 GLN B 16 REMARK 465 SER B 17 REMARK 465 PHE B 18 REMARK 465 THR B 19 REMARK 465 LYS B 20 REMARK 465 ALA B 21 REMARK 465 ALA B 22 REMARK 465 ASP B 23 REMARK 465 LYS B 24 REMARK 465 LEU B 25 REMARK 465 CYS B 26 REMARK 465 ILE B 27 REMARK 465 ALA B 28 REMARK 465 GLN B 29 REMARK 465 PRO B 30 REMARK 465 PRO B 31 REMARK 465 LEU B 32 REMARK 465 SER B 33 REMARK 465 ARG B 34 REMARK 465 GLN B 35 REMARK 465 ILE B 36 REMARK 465 GLN B 37 REMARK 465 ASN B 38 REMARK 465 LEU B 39 REMARK 465 GLU B 40 REMARK 465 GLU B 41 REMARK 465 GLU B 42 REMARK 465 LEU B 43 REMARK 465 GLY B 44 REMARK 465 ILE B 45 REMARK 465 GLN B 46 REMARK 465 LEU B 47 REMARK 465 LEU B 48 REMARK 465 GLU B 49 REMARK 465 ARG B 50 REMARK 465 GLY B 51 REMARK 465 SER B 52 REMARK 465 ARG B 53 REMARK 465 PRO B 54 REMARK 465 VAL B 55 REMARK 465 LYS B 56 REMARK 465 THR B 57 REMARK 465 THR B 58 REMARK 465 PRO B 59 REMARK 465 GLU B 60 REMARK 465 GLY B 61 REMARK 465 HIS B 62 REMARK 465 PHE B 63 REMARK 465 PHE B 64 REMARK 465 TYR B 65 REMARK 465 GLN B 66 REMARK 465 TYR B 67 REMARK 465 ALA B 68 REMARK 465 ILE B 69 REMARK 465 LYS B 70 REMARK 465 LEU B 71 REMARK 465 LEU B 72 REMARK 465 SER B 73 REMARK 465 ASN B 74 REMARK 465 VAL B 75 REMARK 465 ASP B 76 REMARK 465 GLN B 77 REMARK 465 MET B 78 REMARK 465 VAL B 79 REMARK 465 SER B 80 REMARK 465 MET B 81 REMARK 465 THR B 82 REMARK 465 LYS B 83 REMARK 465 ARG B 84 REMARK 465 ILE B 85 REMARK 465 ALA B 86 REMARK 465 SER B 87 REMARK 465 VAL B 88 REMARK 465 GLU B 306 REMARK 465 HIS B 307 REMARK 465 HIS B 308 REMARK 465 HIS B 309 REMARK 465 HIS B 310 REMARK 465 HIS B 311 REMARK 465 HIS B 312 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 276 34.21 -99.61 REMARK 500 PRO A 302 -148.93 -78.75 REMARK 500 GLU B 300 -45.09 -164.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 579 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 580 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 581 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 582 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 583 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 584 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 585 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 586 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 587 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 588 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 589 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 590 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2F6P RELATED DB: PDB REMARK 900 BENM-EBD SEMET REMARK 900 RELATED ID: 2F7A RELATED DB: PDB REMARK 900 BENM-EBD REMARK 900 RELATED ID: 2F78 RELATED DB: PDB REMARK 900 BENM-EBD + BENZOATE REMARK 900 RELATED ID: 2F7B RELATED DB: PDB REMARK 900 CATM-EBD REMARK 900 RELATED ID: 2F97 RELATED DB: PDB REMARK 900 BENM-EBD (HIGH PH) REMARK 900 RELATED ID: 2F8D RELATED DB: PDB REMARK 900 BENM-EBD (HIGH PH) REMARK 900 RELATED ID: 2H98 RELATED DB: PDB REMARK 900 RELATED ID: 2H9B RELATED DB: PDB REMARK 900 RELATED ID: 2H9Q RELATED DB: PDB DBREF 2H99 A 1 304 UNP O68014 BENM_ACIAD 1 304 DBREF 2H99 B 1 304 UNP O68014 BENM_ACIAD 1 304 SEQADV 2H99 HIS A 156 UNP O68014 ARG 156 ENGINEERED MUTATION SEQADV 2H99 SER A 157 UNP O68014 THR 157 ENGINEERED MUTATION SEQADV 2H99 LEU A 305 UNP O68014 EXPRESSION TAG SEQADV 2H99 GLU A 306 UNP O68014 EXPRESSION TAG SEQADV 2H99 HIS A 307 UNP O68014 EXPRESSION TAG SEQADV 2H99 HIS A 308 UNP O68014 EXPRESSION TAG SEQADV 2H99 HIS A 309 UNP O68014 EXPRESSION TAG SEQADV 2H99 HIS A 310 UNP O68014 EXPRESSION TAG SEQADV 2H99 HIS A 311 UNP O68014 EXPRESSION TAG SEQADV 2H99 HIS A 312 UNP O68014 EXPRESSION TAG SEQADV 2H99 HIS B 156 UNP O68014 ARG 156 ENGINEERED MUTATION SEQADV 2H99 SER B 157 UNP O68014 THR 157 ENGINEERED MUTATION SEQADV 2H99 LEU B 305 UNP O68014 EXPRESSION TAG SEQADV 2H99 GLU B 306 UNP O68014 EXPRESSION TAG SEQADV 2H99 HIS B 307 UNP O68014 EXPRESSION TAG SEQADV 2H99 HIS B 308 UNP O68014 EXPRESSION TAG SEQADV 2H99 HIS B 309 UNP O68014 EXPRESSION TAG SEQADV 2H99 HIS B 310 UNP O68014 EXPRESSION TAG SEQADV 2H99 HIS B 311 UNP O68014 EXPRESSION TAG SEQADV 2H99 HIS B 312 UNP O68014 EXPRESSION TAG SEQRES 1 A 312 MET GLU LEU ARG HIS LEU ARG TYR PHE VAL ALA VAL VAL SEQRES 2 A 312 GLU GLU GLN SER PHE THR LYS ALA ALA ASP LYS LEU CYS SEQRES 3 A 312 ILE ALA GLN PRO PRO LEU SER ARG GLN ILE GLN ASN LEU SEQRES 4 A 312 GLU GLU GLU LEU GLY ILE GLN LEU LEU GLU ARG GLY SER SEQRES 5 A 312 ARG PRO VAL LYS THR THR PRO GLU GLY HIS PHE PHE TYR SEQRES 6 A 312 GLN TYR ALA ILE LYS LEU LEU SER ASN VAL ASP GLN MET SEQRES 7 A 312 VAL SER MET THR LYS ARG ILE ALA SER VAL GLU LYS THR SEQRES 8 A 312 ILE ARG ILE GLY PHE VAL GLY SER LEU LEU PHE GLY LEU SEQRES 9 A 312 LEU PRO ARG ILE ILE HIS LEU TYR ARG GLN ALA HIS PRO SEQRES 10 A 312 ASN LEU ARG ILE GLU LEU TYR GLU MET GLY THR LYS ALA SEQRES 11 A 312 GLN THR GLU ALA LEU LYS GLU GLY ARG ILE ASP ALA GLY SEQRES 12 A 312 PHE GLY ARG LEU LYS ILE SER ASP PRO ALA ILE LYS HIS SEQRES 13 A 312 SER LEU LEU ARG ASN GLU ARG LEU MET VAL ALA VAL HIS SEQRES 14 A 312 ALA SER HIS PRO LEU ASN GLN MET LYS ASP LYS GLY VAL SEQRES 15 A 312 HIS LEU ASN ASP LEU ILE ASP GLU LYS ILE LEU LEU TYR SEQRES 16 A 312 PRO SER SER PRO LYS PRO ASN PHE SER THR HIS VAL MET SEQRES 17 A 312 ASN ILE PHE SER ASP HIS GLY LEU GLU PRO THR LYS ILE SEQRES 18 A 312 ASN GLU VAL ARG GLU VAL GLN LEU ALA LEU GLY LEU VAL SEQRES 19 A 312 ALA ALA GLY GLU GLY ILE SER LEU VAL PRO ALA SER THR SEQRES 20 A 312 GLN SER ILE GLN LEU PHE ASN LEU SER TYR VAL PRO LEU SEQRES 21 A 312 LEU ASP PRO ASP ALA ILE THR PRO ILE TYR ILE ALA VAL SEQRES 22 A 312 ARG ASN MET GLU GLU SER THR TYR ILE TYR SER LEU TYR SEQRES 23 A 312 GLU THR ILE ARG GLN ILE TYR ALA TYR GLU GLY PHE THR SEQRES 24 A 312 GLU PRO PRO ASN TRP LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 312 MET GLU LEU ARG HIS LEU ARG TYR PHE VAL ALA VAL VAL SEQRES 2 B 312 GLU GLU GLN SER PHE THR LYS ALA ALA ASP LYS LEU CYS SEQRES 3 B 312 ILE ALA GLN PRO PRO LEU SER ARG GLN ILE GLN ASN LEU SEQRES 4 B 312 GLU GLU GLU LEU GLY ILE GLN LEU LEU GLU ARG GLY SER SEQRES 5 B 312 ARG PRO VAL LYS THR THR PRO GLU GLY HIS PHE PHE TYR SEQRES 6 B 312 GLN TYR ALA ILE LYS LEU LEU SER ASN VAL ASP GLN MET SEQRES 7 B 312 VAL SER MET THR LYS ARG ILE ALA SER VAL GLU LYS THR SEQRES 8 B 312 ILE ARG ILE GLY PHE VAL GLY SER LEU LEU PHE GLY LEU SEQRES 9 B 312 LEU PRO ARG ILE ILE HIS LEU TYR ARG GLN ALA HIS PRO SEQRES 10 B 312 ASN LEU ARG ILE GLU LEU TYR GLU MET GLY THR LYS ALA SEQRES 11 B 312 GLN THR GLU ALA LEU LYS GLU GLY ARG ILE ASP ALA GLY SEQRES 12 B 312 PHE GLY ARG LEU LYS ILE SER ASP PRO ALA ILE LYS HIS SEQRES 13 B 312 SER LEU LEU ARG ASN GLU ARG LEU MET VAL ALA VAL HIS SEQRES 14 B 312 ALA SER HIS PRO LEU ASN GLN MET LYS ASP LYS GLY VAL SEQRES 15 B 312 HIS LEU ASN ASP LEU ILE ASP GLU LYS ILE LEU LEU TYR SEQRES 16 B 312 PRO SER SER PRO LYS PRO ASN PHE SER THR HIS VAL MET SEQRES 17 B 312 ASN ILE PHE SER ASP HIS GLY LEU GLU PRO THR LYS ILE SEQRES 18 B 312 ASN GLU VAL ARG GLU VAL GLN LEU ALA LEU GLY LEU VAL SEQRES 19 B 312 ALA ALA GLY GLU GLY ILE SER LEU VAL PRO ALA SER THR SEQRES 20 B 312 GLN SER ILE GLN LEU PHE ASN LEU SER TYR VAL PRO LEU SEQRES 21 B 312 LEU ASP PRO ASP ALA ILE THR PRO ILE TYR ILE ALA VAL SEQRES 22 B 312 ARG ASN MET GLU GLU SER THR TYR ILE TYR SER LEU TYR SEQRES 23 B 312 GLU THR ILE ARG GLN ILE TYR ALA TYR GLU GLY PHE THR SEQRES 24 B 312 GLU PRO PRO ASN TRP LEU GLU HIS HIS HIS HIS HIS HIS HET SO4 A 580 5 HET SO4 A 583 5 HET ACT A 585 4 HET ACT A 587 4 HET ACT A 588 4 HET SO4 B 579 5 HET SO4 B 581 5 HET SO4 B 582 5 HET ACT B 584 4 HET ACT B 586 4 HET CL B 589 1 HET GOL B 590 6 HETNAM SO4 SULFATE ION HETNAM ACT ACETATE ION HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 5(O4 S 2-) FORMUL 5 ACT 5(C2 H3 O2 1-) FORMUL 13 CL CL 1- FORMUL 14 GOL C3 H8 O3 FORMUL 15 HOH *578(H2 O) HELIX 1 1 GLY A 98 GLY A 103 5 6 HELIX 2 2 LEU A 104 ALA A 115 1 12 HELIX 3 3 GLY A 127 GLU A 137 1 11 HELIX 4 4 HIS A 172 LYS A 178 5 7 HELIX 5 5 HIS A 183 LEU A 187 5 5 HELIX 6 6 ASN A 202 ASP A 213 1 12 HELIX 7 7 GLU A 226 ALA A 236 1 11 HELIX 8 8 SER A 246 ILE A 250 5 5 HELIX 9 9 SER A 279 GLY A 297 1 19 HELIX 10 10 GLY B 98 GLY B 103 5 6 HELIX 11 11 LEU B 104 HIS B 116 1 13 HELIX 12 12 GLY B 127 GLU B 137 1 11 HELIX 13 13 HIS B 172 LYS B 178 5 7 HELIX 14 14 HIS B 183 LEU B 187 5 5 HELIX 15 15 ASN B 202 ASP B 213 1 12 HELIX 16 16 GLU B 226 ALA B 236 1 11 HELIX 17 17 SER B 246 ILE B 250 5 5 HELIX 18 18 SER B 279 GLU B 296 1 18 SHEET 1 A 6 ARG A 120 GLU A 125 0 SHEET 2 A 6 THR A 91 PHE A 96 1 N ILE A 94 O GLU A 122 SHEET 3 A 6 ALA A 142 GLY A 145 1 O ALA A 142 N GLY A 95 SHEET 4 A 6 ILE A 266 ARG A 274 -1 O ALA A 272 N GLY A 143 SHEET 5 A 6 ILE A 154 HIS A 169 -1 N GLU A 162 O THR A 267 SHEET 6 A 6 SER A 241 PRO A 244 -1 O SER A 241 N ALA A 167 SHEET 1 B 6 ARG A 120 GLU A 125 0 SHEET 2 B 6 THR A 91 PHE A 96 1 N ILE A 94 O GLU A 122 SHEET 3 B 6 ALA A 142 GLY A 145 1 O ALA A 142 N GLY A 95 SHEET 4 B 6 ILE A 266 ARG A 274 -1 O ALA A 272 N GLY A 143 SHEET 5 B 6 ILE A 154 HIS A 169 -1 N GLU A 162 O THR A 267 SHEET 6 B 6 LEU A 255 PRO A 259 -1 O SER A 256 N VAL A 168 SHEET 1 C 2 LYS A 191 LEU A 194 0 SHEET 2 C 2 LYS A 220 GLU A 223 1 O LYS A 220 N ILE A 192 SHEET 1 D 6 LEU B 119 GLU B 125 0 SHEET 2 D 6 LYS B 90 PHE B 96 1 N LYS B 90 O ARG B 120 SHEET 3 D 6 ALA B 142 GLY B 145 1 O PHE B 144 N GLY B 95 SHEET 4 D 6 ILE B 266 ARG B 274 -1 O TYR B 270 N GLY B 145 SHEET 5 D 6 ILE B 154 HIS B 169 -1 N GLU B 162 O THR B 267 SHEET 6 D 6 SER B 241 PRO B 244 -1 O SER B 241 N ALA B 167 SHEET 1 E 6 LEU B 119 GLU B 125 0 SHEET 2 E 6 LYS B 90 PHE B 96 1 N LYS B 90 O ARG B 120 SHEET 3 E 6 ALA B 142 GLY B 145 1 O PHE B 144 N GLY B 95 SHEET 4 E 6 ILE B 266 ARG B 274 -1 O TYR B 270 N GLY B 145 SHEET 5 E 6 ILE B 154 HIS B 169 -1 N GLU B 162 O THR B 267 SHEET 6 E 6 LEU B 255 PRO B 259 -1 O VAL B 258 N VAL B 166 SHEET 1 F 2 LYS B 191 LEU B 194 0 SHEET 2 F 2 LYS B 220 GLU B 223 1 O ASN B 222 N LEU B 194 CISPEP 1 TYR A 195 PRO A 196 0 -5.40 CISPEP 2 LYS A 200 PRO A 201 0 4.65 CISPEP 3 ASN A 303 TRP A 304 0 3.62 CISPEP 4 TYR B 195 PRO B 196 0 -5.15 CISPEP 5 LYS B 200 PRO B 201 0 -0.45 CISPEP 6 GLU B 300 PRO B 301 0 -22.52 CISPEP 7 PRO B 301 PRO B 302 0 -29.05 CISPEP 8 PRO B 302 ASN B 303 0 8.30 CISPEP 9 ASN B 303 TRP B 304 0 2.62 SITE 1 AC1 9 LYS B 148 LYS B 155 HIS B 156 HOH B 594 SITE 2 AC1 9 HOH B 660 HOH B 717 HOH B 722 HOH B 789 SITE 3 AC1 9 HOH B 852 SITE 1 AC2 7 LYS A 90 HIS A 116 PRO A 117 ASN A 118 SITE 2 AC2 7 LEU A 119 TYR A 281 LYS B 129 SITE 1 AC3 10 VAL B 97 GLY B 127 THR B 128 ARG B 146 SITE 2 AC3 10 LEU B 147 PRO B 196 ASN B 202 PHE B 203 SITE 3 AC3 10 HOH B 603 HOH B 664 SITE 1 AC4 4 HIS B 116 PRO B 117 ASN B 118 LEU B 119 SITE 1 AC5 5 LYS A 148 ILE A 154 LYS A 155 HIS A 156 SITE 2 AC5 5 HOH A 628 SITE 1 AC6 6 LEU B 104 ARG B 160 ILE B 269 TYR B 293 SITE 2 AC6 6 HOH B 637 HOH B 691 SITE 1 AC7 6 LEU A 104 ARG A 160 ILE A 269 TYR A 293 SITE 2 AC7 6 HOH A 629 HOH A 639 SITE 1 AC8 3 HIS B 206 ASN B 209 HOH B 678 SITE 1 AC9 7 SER A 157 LEU A 159 TYR A 286 ARG A 290 SITE 2 AC9 7 PRO A 301 PRO A 302 ASN A 303 SITE 1 BC1 7 GLY A 127 THR A 128 ARG A 146 ASN A 202 SITE 2 BC1 7 PHE A 203 HOH A 650 HOH A 748 SITE 1 BC2 3 SER B 99 ARG B 146 VAL B 227 SITE 1 BC3 9 PHE B 102 GLY B 103 LEU B 104 SER B 246 SITE 2 BC3 9 SER B 249 GLU B 296 HOH B 765 HOH B 781 SITE 3 BC3 9 HOH B 872 CRYST1 64.937 66.506 117.495 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015400 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015036 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008511 0.00000