HEADER ISOMERASE 09-JUN-06 2H9F TITLE CRYSTAL STRUCTURE OF A PRPF FAMILY METHYLACONITATE ISOMERASE (PA0793) TITLE 2 FROM PSEUDOMONAS AERUGINOSA AT 1.95 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: NP_249484.1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS METHYLACONITATE ISOMERASE, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 3 ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 25-JAN-23 2H9F 1 REMARK SEQADV LINK REVDAT 5 18-OCT-17 2H9F 1 REMARK REVDAT 4 13-JUL-11 2H9F 1 VERSN REVDAT 3 28-JUL-10 2H9F 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 2H9F 1 VERSN REVDAT 1 08-AUG-06 2H9F 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN (NP_249484.1) FROM JRNL TITL 2 PSEUDOMONAS AERUGINOSA AT 1.95 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 57491 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2918 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3978 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2940 REMARK 3 BIN FREE R VALUE SET COUNT : 204 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2894 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 371 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 35.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.50000 REMARK 3 B22 (A**2) : -1.50000 REMARK 3 B33 (A**2) : 2.99000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.095 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.096 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.085 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.099 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3016 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2050 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4102 ; 1.551 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4979 ; 0.919 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 399 ; 6.398 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;36.867 ;22.705 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 464 ;13.221 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;18.852 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 455 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3415 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 616 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 505 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2130 ; 0.202 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1428 ; 0.178 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1670 ; 0.091 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 237 ; 0.156 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 22 ; 0.135 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 84 ; 0.302 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.151 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2083 ; 2.167 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 808 ; 0.678 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3120 ; 2.763 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1145 ; 4.310 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 977 ; 5.683 ; 7.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 182 REMARK 3 RESIDUE RANGE : A 372 A 395 REMARK 3 ORIGIN FOR THE GROUP (A): 73.3966 26.7981 9.4250 REMARK 3 T TENSOR REMARK 3 T11: 0.0590 T22: -0.0744 REMARK 3 T33: -0.1161 T12: 0.0201 REMARK 3 T13: -0.0320 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 0.3401 L22: 1.5459 REMARK 3 L33: 0.3057 L12: -0.0722 REMARK 3 L13: -0.0854 L23: -0.2420 REMARK 3 S TENSOR REMARK 3 S11: 0.0755 S12: 0.0767 S13: -0.0863 REMARK 3 S21: -0.2189 S22: -0.0322 S23: 0.0523 REMARK 3 S31: 0.0451 S32: 0.0059 S33: -0.0433 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 187 A 371 REMARK 3 ORIGIN FOR THE GROUP (A): 99.0202 6.4022 14.9791 REMARK 3 T TENSOR REMARK 3 T11: 0.0343 T22: -0.0764 REMARK 3 T33: -0.2043 T12: -0.0737 REMARK 3 T13: 0.0706 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 1.9394 L22: 2.6927 REMARK 3 L33: 3.3892 L12: -0.4386 REMARK 3 L13: 0.8688 L23: -0.6690 REMARK 3 S TENSOR REMARK 3 S11: -0.1521 S12: 0.1939 S13: -0.0721 REMARK 3 S21: 0.1490 S22: 0.0914 S23: -0.0591 REMARK 3 S31: -0.4301 S32: 0.5479 S33: 0.0607 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.7 REMARK 3 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3. AN METAL ION WAS FOUND NEAR HIS 3, MEDIATING REMARK 3 INTERACTION BETWEEN A SYMMETRIC RELATED MOLECULE, WAS MODELLED REMARK 3 AS A COBALT ION DUE TO ITS PRESENCE IN THE CRYSTALLIZATION REMARK 3 CONDITION. 4. THE LOOP 289-293 HAS POOR DENSITY. LOOP 183-186 IS REMARK 3 DISORDERED. 5. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 4 REMARK 4 2H9F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1000038095. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL1-5 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976240 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : 1M LONG RH COATED BENT REMARK 200 CYLINDRICAL MIRROR FOR REMARK 200 HORIZONTAL AND VERTICAL FOCUSSING REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57509 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 47.036 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.580 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.5400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.36 REMARK 200 R MERGE FOR SHELL (I) : 0.93800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.250 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8M (NH4)2SO4, 0.01M COCL2, 0.1M MES, REMARK 280 PH 6.5, VAPOR DIFFUSION, SITTING DROP, NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 74.34500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 74.34500 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.54250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 74.34500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.27125 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 74.34500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 105.81375 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 74.34500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 105.81375 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 74.34500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 35.27125 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 74.34500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 74.34500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.54250 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 74.34500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 74.34500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 70.54250 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 74.34500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 105.81375 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 74.34500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 35.27125 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 74.34500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 35.27125 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 74.34500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 105.81375 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 74.34500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 74.34500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 70.54250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 7110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -134.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 74.34500 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 35.27125 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ASP A 183 REMARK 465 ASP A 184 REMARK 465 GLY A 185 REMARK 465 GLU A 186 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 95 CE NZ REMARK 470 GLU A 163 OE1 OE2 REMARK 470 ASP A 187 CG OD1 OD2 REMARK 470 LYS A 264 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 46 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 46 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG A 46 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 259 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 381 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 381 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 315 -113.53 -144.26 REMARK 500 ALA A 365 111.35 -165.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 396 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 3 NE2 REMARK 620 2 ASP A 161 OD1 94.8 REMARK 620 3 ASP A 286 OD2 178.8 86.0 REMARK 620 4 HOH A 494 O 96.0 164.1 83.3 REMARK 620 5 HOH A 510 O 91.0 89.0 88.2 102.4 REMARK 620 6 HOH A 743 O 95.5 86.2 85.3 81.2 172.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 396 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 397 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 398 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 399 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 366300 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE: REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH REMARK 999 TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED REMARK 999 BY THE TARGET SEQUENCE. DBREF 2H9F A 1 395 UNP Q9I5E5 Q9I5E5_PSEAE 1 395 SEQADV 2H9F GLY A 0 UNP Q9I5E5 EXPRESSION TAG SEQADV 2H9F MSE A 1 UNP Q9I5E5 MET 1 MODIFIED RESIDUE SEQADV 2H9F MSE A 45 UNP Q9I5E5 MET 45 MODIFIED RESIDUE SEQADV 2H9F MSE A 61 UNP Q9I5E5 MET 61 MODIFIED RESIDUE SEQADV 2H9F MSE A 213 UNP Q9I5E5 MET 213 MODIFIED RESIDUE SEQADV 2H9F MSE A 260 UNP Q9I5E5 MET 260 MODIFIED RESIDUE SEQADV 2H9F MSE A 309 UNP Q9I5E5 MET 309 MODIFIED RESIDUE SEQADV 2H9F MSE A 316 UNP Q9I5E5 MET 316 MODIFIED RESIDUE SEQADV 2H9F MSE A 317 UNP Q9I5E5 MET 317 MODIFIED RESIDUE SEQADV 2H9F MSE A 376 UNP Q9I5E5 MET 376 MODIFIED RESIDUE SEQADV 2H9F MSE A 384 UNP Q9I5E5 MET 384 MODIFIED RESIDUE SEQRES 1 A 396 GLY MSE ALA HIS PRO PRO GLN ILE ARG ILE PRO ALA THR SEQRES 2 A 396 TYR LEU ARG GLY GLY THR SER LYS GLY VAL PHE PHE ARG SEQRES 3 A 396 LEU GLU ASP LEU PRO GLU SER CYS ARG VAL PRO GLY GLU SEQRES 4 A 396 ALA ARG ASP ARG LEU PHE MSE ARG VAL ILE GLY SER PRO SEQRES 5 A 396 ASP PRO TYR ALA ALA HIS ILE ASP GLY MSE GLY GLY ALA SEQRES 6 A 396 THR SER SER THR SER LYS CYS VAL ILE LEU SER LYS SER SEQRES 7 A 396 SER GLN PRO GLY HIS ASP VAL ASP TYR LEU TYR GLY GLN SEQRES 8 A 396 VAL SER ILE ASP LYS PRO PHE VAL ASP TRP SER GLY ASN SEQRES 9 A 396 CYS GLY ASN LEU SER THR GLY ALA GLY ALA PHE ALA LEU SEQRES 10 A 396 HIS ALA GLY LEU VAL ASP PRO ALA ARG ILE PRO GLU ASP SEQRES 11 A 396 GLY ILE CYS GLU VAL ARG ILE TRP GLN ALA ASN ILE GLY SEQRES 12 A 396 LYS THR ILE ILE ALA HIS VAL PRO VAL SER GLY GLY GLN SEQRES 13 A 396 VAL GLN GLU THR GLY ASP PHE GLU LEU ASP GLY VAL THR SEQRES 14 A 396 PHE PRO ALA ALA GLU ILE VAL LEU GLU PHE LEU ASP PRO SEQRES 15 A 396 SER ASP ASP GLY GLU ASP GLY GLY ALA ILE PHE PRO THR SEQRES 16 A 396 GLY ASN LEU VAL ASP ASP LEU GLU VAL PRO GLY VAL GLY SEQRES 17 A 396 THR PHE LYS ALA THR MSE ILE ASN ALA GLY ILE PRO THR SEQRES 18 A 396 VAL PHE VAL ASN ALA GLU GLU ILE GLY TYR ARG GLY THR SEQRES 19 A 396 GLU LEU ARG GLU GLU ILE ASN GLY ASP PRO GLN GLN LEU SEQRES 20 A 396 ALA ARG PHE GLU ARG ILE ARG VAL ALA GLY ALA LEU ARG SEQRES 21 A 396 MSE GLY LEU ILE LYS THR PRO GLU GLU ALA ALA THR ARG SEQRES 22 A 396 GLN HIS THR PRO LYS ILE ALA PHE VAL ALA PRO PRO ARG SEQRES 23 A 396 ASP TYR ARG THR ALA SER GLY LYS LEU VAL ALA ALA GLY SEQRES 24 A 396 ASP ILE ASP LEU LEU VAL ARG ALA LEU SER MSE GLY LYS SEQRES 25 A 396 LEU HIS HIS ALA MSE MSE GLY THR ALA ALA VAL ALA ILE SEQRES 26 A 396 GLY THR ALA ALA ALA ILE PRO GLY THR LEU VAL ASN LEU SEQRES 27 A 396 ALA ALA GLY GLY GLY GLU ARG SER ALA VAL ARG PHE GLY SEQRES 28 A 396 HIS PRO SER GLY THR LEU ARG VAL GLY ALA GLU ALA SER SEQRES 29 A 396 GLN ALA ASN GLY GLU TRP THR VAL THR LYS ALA ILE MSE SEQRES 30 A 396 SER ARG SER ALA ARG ILE LEU MSE GLU GLY TRP VAL ARG SEQRES 31 A 396 VAL PRO GLY ASP ALA PHE MODRES 2H9F MSE A 1 MET SELENOMETHIONINE MODRES 2H9F MSE A 45 MET SELENOMETHIONINE MODRES 2H9F MSE A 61 MET SELENOMETHIONINE MODRES 2H9F MSE A 213 MET SELENOMETHIONINE MODRES 2H9F MSE A 260 MET SELENOMETHIONINE MODRES 2H9F MSE A 309 MET SELENOMETHIONINE MODRES 2H9F MSE A 316 MET SELENOMETHIONINE MODRES 2H9F MSE A 317 MET SELENOMETHIONINE MODRES 2H9F MSE A 376 MET SELENOMETHIONINE MODRES 2H9F MSE A 384 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 45 8 HET MSE A 61 8 HET MSE A 213 8 HET MSE A 260 8 HET MSE A 309 8 HET MSE A 316 8 HET MSE A 317 8 HET MSE A 376 8 HET MSE A 384 8 HET CO A 396 1 HET CL A 397 1 HET CL A 398 1 HET SO4 A 399 5 HET SO4 A 400 5 HET SO4 A 401 5 HET SO4 A 402 5 HET GOL A 403 6 HET GOL A 404 6 HETNAM MSE SELENOMETHIONINE HETNAM CO COBALT (II) ION HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 2 CO CO 2+ FORMUL 3 CL 2(CL 1-) FORMUL 5 SO4 4(O4 S 2-) FORMUL 9 GOL 2(C3 H8 O3) FORMUL 11 HOH *371(H2 O) HELIX 1 1 GLU A 27 LEU A 29 5 3 HELIX 2 2 PRO A 30 ARG A 34 5 5 HELIX 3 3 GLY A 37 GLY A 49 1 13 HELIX 4 4 THR A 65 THR A 68 5 4 HELIX 5 5 CYS A 104 ALA A 118 1 15 HELIX 6 6 ASP A 122 ILE A 126 5 5 HELIX 7 7 ARG A 236 GLY A 241 1 6 HELIX 8 8 ASP A 242 MSE A 260 1 19 HELIX 9 9 THR A 265 ARG A 272 5 8 HELIX 10 10 ALA A 296 ILE A 300 5 5 HELIX 11 11 MSE A 317 ILE A 330 1 14 HELIX 12 12 THR A 333 ALA A 339 1 7 SHEET 1 A 6 ALA A 380 PRO A 391 0 SHEET 2 A 6 GLN A 6 GLY A 16 -1 N TYR A 13 O MSE A 384 SHEET 3 A 6 SER A 19 ARG A 25 -1 O PHE A 23 N THR A 12 SHEET 4 A 6 LYS A 70 LYS A 76 1 O VAL A 72 N PHE A 24 SHEET 5 A 6 VAL A 84 VAL A 91 -1 O GLY A 89 N CYS A 71 SHEET 6 A 6 VAL A 98 ASP A 99 -1 O ASP A 99 N GLN A 90 SHEET 1 B 4 VAL A 84 VAL A 91 0 SHEET 2 B 4 GLY A 130 GLN A 138 1 O TRP A 137 N VAL A 84 SHEET 3 B 4 LYS A 143 SER A 152 -1 O ILE A 145 N ILE A 136 SHEET 4 B 4 GLN A 155 VAL A 156 -1 O GLN A 155 N SER A 152 SHEET 1 C 7 LYS A 143 SER A 152 0 SHEET 2 C 7 ILE A 174 LEU A 179 -1 O GLU A 177 N ILE A 146 SHEET 3 C 7 GLU A 368 ARG A 378 -1 O MSE A 376 N LEU A 176 SHEET 4 C 7 GLY A 354 ALA A 365 -1 N SER A 363 O THR A 370 SHEET 5 C 7 ALA A 346 HIS A 351 -1 N HIS A 351 O GLY A 354 SHEET 6 C 7 LEU A 302 SER A 308 1 N LEU A 302 O GLY A 350 SHEET 7 C 7 LYS A 311 LEU A 312 -1 O LYS A 311 N SER A 308 SHEET 1 D 5 LEU A 302 SER A 308 0 SHEET 2 D 5 LYS A 277 ALA A 282 -1 N ALA A 282 O LEU A 303 SHEET 3 D 5 PRO A 219 ASN A 224 1 N VAL A 221 O LYS A 277 SHEET 4 D 5 GLY A 207 ASN A 215 -1 N THR A 212 O PHE A 222 SHEET 5 D 5 ASP A 199 VAL A 203 -1 N VAL A 203 O GLY A 207 SHEET 1 E 2 TYR A 287 ARG A 288 0 SHEET 2 E 2 LEU A 294 VAL A 295 -1 O VAL A 295 N TYR A 287 LINK C MSE A 1 N ALA A 2 1555 1555 1.33 LINK C PHE A 44 N MSE A 45 1555 1555 1.32 LINK C MSE A 45 N ARG A 46 1555 1555 1.32 LINK C GLY A 60 N MSE A 61 1555 1555 1.34 LINK C MSE A 61 N GLY A 62 1555 1555 1.34 LINK C THR A 212 N MSE A 213 1555 1555 1.32 LINK C MSE A 213 N ILE A 214 1555 1555 1.33 LINK C ARG A 259 N MSE A 260 1555 1555 1.34 LINK C MSE A 260 N GLY A 261 1555 1555 1.33 LINK C SER A 308 N MSE A 309 1555 1555 1.32 LINK C MSE A 309 N GLY A 310 1555 1555 1.33 LINK C ALA A 315 N MSE A 316 1555 1555 1.32 LINK C MSE A 316 N MSE A 317 1555 1555 1.33 LINK C MSE A 317 N GLY A 318 1555 1555 1.32 LINK C ILE A 375 N MSE A 376 1555 1555 1.33 LINK C MSE A 376 N SER A 377 1555 1555 1.33 LINK C LEU A 383 N MSE A 384 1555 1555 1.33 LINK C MSE A 384 N GLU A 385 1555 1555 1.33 LINK NE2 HIS A 3 CO CO A 396 1555 1555 2.14 LINK OD1 ASP A 161 CO CO A 396 6555 1555 2.16 LINK OD2 ASP A 286 CO CO A 396 4564 1555 2.16 LINK CO CO A 396 O HOH A 494 1555 4564 2.21 LINK CO CO A 396 O HOH A 510 1555 4564 2.35 LINK CO CO A 396 O HOH A 743 1555 6555 2.07 CISPEP 1 SER A 50 PRO A 51 0 -6.38 CISPEP 2 THR A 275 PRO A 276 0 -5.43 SITE 1 AC1 6 HIS A 3 ASP A 161 ASP A 286 HOH A 494 SITE 2 AC1 6 HOH A 510 HOH A 743 SITE 1 AC2 3 SER A 75 LYS A 76 HOH A 451 SITE 1 AC3 1 SER A 32 SITE 1 AC4 8 PRO A 80 GLY A 81 GLN A 364 ASN A 366 SITE 2 AC4 8 GLY A 367 HOH A 665 HOH A 675 HOH A 677 SITE 1 AC5 5 ILE A 218 HIS A 274 LYS A 277 HOH A 639 SITE 2 AC5 5 HOH A 650 SITE 1 AC6 3 ARG A 348 ARG A 357 HOH A 740 SITE 1 AC7 1 ARG A 25 SITE 1 AC8 3 LYS A 293 GLY A 354 THR A 355 SITE 1 AC9 5 GLU A 343 SER A 345 ALA A 346 HOH A 683 SITE 2 AC9 5 HOH A 742 CRYST1 148.690 148.690 141.085 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006730 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006730 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007090 0.00000 HETATM 1 N MSE A 1 63.142 57.391 0.102 1.00 64.24 N HETATM 2 CA MSE A 1 64.170 57.990 1.011 1.00 65.20 C HETATM 3 C MSE A 1 65.583 57.431 0.763 1.00 60.18 C HETATM 4 O MSE A 1 65.760 56.300 0.290 1.00 59.09 O HETATM 5 CB MSE A 1 63.790 57.800 2.483 1.00 65.16 C HETATM 6 CG MSE A 1 63.885 56.376 2.987 1.00 67.82 C HETATM 7 SE MSE A 1 62.699 55.988 4.579 0.70 77.01 SE HETATM 8 CE MSE A 1 63.990 56.475 6.257 1.00 67.49 C