HEADER HYDROLASE 12-JUN-06 2H9Y TITLE CRYSTAL STRUCTURE OF MOUSE ACETYLCHOLINESTERASE COMPLEXED WITH M-(N,N, TITLE 2 N-TRIMETHYLAMMONIO)TRIFLUOROACETOPHENONE CAVEAT 2H9Y FUC C 2 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETYLCHOLINESTERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN; COMPND 5 SYNONYM: ACHE; COMPND 6 EC: 3.1.1.7; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: LAMBDA ZAP; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK 293; SOURCE 10 EXPRESSION_SYSTEM_CELL: HUMAN EMBRYONIC KIDNEY CELLS (HEK) KEYWDS HYDROLASE FOLD, SERINE ESTERASE, ACETYLCHOLINESTERASE, HOMODIMER, KEYWDS 2 GLYCOSYLATED PROTEIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.BOURNE,Z.RADIC,G.SULZENBACHER,E.KIM,P.TAYLOR,P.MARCHOT REVDAT 7 23-OCT-24 2H9Y 1 REMARK REVDAT 6 25-OCT-23 2H9Y 1 HETSYN REVDAT 5 29-JUL-20 2H9Y 1 CAVEAT COMPND REMARK HETNAM REVDAT 5 2 1 LINK SITE ATOM REVDAT 4 13-JUL-11 2H9Y 1 VERSN REVDAT 3 24-FEB-09 2H9Y 1 VERSN REVDAT 2 03-JUL-07 2H9Y 1 JRNL REVDAT 1 18-JUL-06 2H9Y 0 JRNL AUTH Y.BOURNE,Z.RADIC,G.SULZENBACHER,E.KIM,P.TAYLOR,P.MARCHOT JRNL TITL SUBSTRATE AND PRODUCT TRAFFICKING THROUGH THE ACTIVE CENTER JRNL TITL 2 GORGE OF ACETYLCHOLINESTERASE ANALYZED BY CRYSTALLOGRAPHY JRNL TITL 3 AND EQUILIBRIUM BINDING JRNL REF J.BIOL.CHEM. V. 281 29256 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16837465 JRNL DOI 10.1074/JBC.M603018200 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 76568 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1560 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5361 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 100 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8350 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 116 REMARK 3 SOLVENT ATOMS : 422 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 52.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.46000 REMARK 3 B22 (A**2) : 4.35000 REMARK 3 B33 (A**2) : -6.82000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.210 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.177 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.143 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.667 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8745 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 5939 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11952 ; 1.288 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14308 ; 0.963 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1066 ; 6.430 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 399 ;33.578 ;22.832 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1265 ;15.307 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 74 ;20.293 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1292 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9762 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1874 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1796 ; 0.204 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 6242 ; 0.199 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4266 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 4366 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 385 ; 0.140 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.118 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 36 ; 0.288 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.151 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5674 ; 0.592 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2146 ; 0.108 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 8620 ; 0.925 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3779 ; 1.322 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3332 ; 2.089 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 6 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 4 A 15 6 REMARK 3 1 B 4 B 15 6 REMARK 3 2 A 16 A 56 5 REMARK 3 2 B 16 B 56 5 REMARK 3 3 A 60 A 74 5 REMARK 3 3 B 60 B 74 5 REMARK 3 4 A 80 A 256 5 REMARK 3 4 B 80 B 256 5 REMARK 3 5 A 265 A 490 5 REMARK 3 5 B 265 B 490 5 REMARK 3 6 A 508 A 539 5 REMARK 3 6 B 508 B 539 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 2867 ; .09 ; .50 REMARK 3 LOOSE POSITIONAL 1 A (A): 3788 ; .46 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 2867 ; .42 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 3788 ; 1.13 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 542 REMARK 3 ORIGIN FOR THE GROUP (A): 27.6871 11.9343 16.5122 REMARK 3 T TENSOR REMARK 3 T11: -.3463 T22: -.3992 REMARK 3 T33: -.2396 T12: -.0007 REMARK 3 T13: .0111 T23: .0570 REMARK 3 L TENSOR REMARK 3 L11: 1.1599 L22: .7728 REMARK 3 L33: 2.2231 L12: -.3357 REMARK 3 L13: .2807 L23: -.6472 REMARK 3 S TENSOR REMARK 3 S11: -.1245 S12: .0581 S13: .0070 REMARK 3 S21: .0331 S22: -.0247 S23: -.0402 REMARK 3 S31: .2681 S32: .0063 S33: .1492 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 543 REMARK 3 ORIGIN FOR THE GROUP (A): 7.8311 4.7736 -40.6145 REMARK 3 T TENSOR REMARK 3 T11: -.3033 T22: -.3095 REMARK 3 T33: -.2226 T12: .0264 REMARK 3 T13: .0086 T23: -.0699 REMARK 3 L TENSOR REMARK 3 L11: .6821 L22: 1.1348 REMARK 3 L33: 2.8081 L12: -.0666 REMARK 3 L13: .2385 L23: .7727 REMARK 3 S TENSOR REMARK 3 S11: .1386 S12: .0940 S13: -.0524 REMARK 3 S21: .0779 S22: -.1612 S23: .1681 REMARK 3 S31: .2544 S32: .0561 S33: .0226 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2H9Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1000038114. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78296 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.44700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1J06 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25-32% P550 MME OR P600, 60-100MM REMARK 280 HEPES OR NA ACETATE, PH 6.5-8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.50650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 113.46700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.69700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 113.46700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.50650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.69700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 259 REMARK 465 GLY A 260 REMARK 465 GLY A 261 REMARK 465 ALA A 262 REMARK 465 GLY A 263 REMARK 465 GLY A 264 REMARK 465 THR A 543 REMARK 465 GLU B 1 REMARK 465 GLY B 2 REMARK 465 ARG B 3 REMARK 465 PRO B 259 REMARK 465 GLY B 260 REMARK 465 GLY B 261 REMARK 465 ALA B 262 REMARK 465 GLY B 263 REMARK 465 GLY B 264 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 496 CG CD CE NZ REMARK 470 ARG B 493 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 246 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 47 -1.52 67.76 REMARK 500 ALA A 62 48.75 -107.24 REMARK 500 SER A 203 -121.14 63.48 REMARK 500 ASP A 306 -82.83 -140.58 REMARK 500 ASP A 323 47.25 -100.99 REMARK 500 TYR A 341 32.90 -99.07 REMARK 500 VAL A 407 -61.75 -130.25 REMARK 500 ALA B 62 50.19 -114.63 REMARK 500 SER B 203 -125.18 66.82 REMARK 500 ASP B 306 -83.57 -123.65 REMARK 500 ASP B 323 43.81 -98.63 REMARK 500 VAL B 407 -63.90 -125.65 REMARK 500 SER B 495 -113.99 -80.51 REMARK 500 SER B 497 -77.40 -168.10 REMARK 500 SER B 541 48.62 -91.08 REMARK 500 ALA B 542 -63.58 168.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS B 496 SER B 497 -142.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1J06 RELATED DB: PDB REMARK 900 APO MACHE REMARK 900 RELATED ID: 1AMN RELATED DB: PDB REMARK 900 TCACHE-TMTFA COMPLEX REMARK 900 RELATED ID: 2HA0 RELATED DB: PDB REMARK 900 RELATED ID: 2HA2 RELATED DB: PDB REMARK 900 RELATED ID: 2HA3 RELATED DB: PDB REMARK 900 RELATED ID: 2HA4 RELATED DB: PDB REMARK 900 RELATED ID: 2HA5 RELATED DB: PDB REMARK 900 RELATED ID: 2HA6 RELATED DB: PDB REMARK 900 RELATED ID: 2HA7 RELATED DB: PDB DBREF 2H9Y A 1 543 UNP P21836 ACES_MOUSE 32 574 DBREF 2H9Y B 1 543 UNP P21836 ACES_MOUSE 32 574 SEQRES 1 A 543 GLU GLY ARG GLU ASP PRO GLN LEU LEU VAL ARG VAL ARG SEQRES 2 A 543 GLY GLY GLN LEU ARG GLY ILE ARG LEU LYS ALA PRO GLY SEQRES 3 A 543 GLY PRO VAL SER ALA PHE LEU GLY ILE PRO PHE ALA GLU SEQRES 4 A 543 PRO PRO VAL GLY SER ARG ARG PHE MET PRO PRO GLU PRO SEQRES 5 A 543 LYS ARG PRO TRP SER GLY VAL LEU ASP ALA THR THR PHE SEQRES 6 A 543 GLN ASN VAL CYS TYR GLN TYR VAL ASP THR LEU TYR PRO SEQRES 7 A 543 GLY PHE GLU GLY THR GLU MET TRP ASN PRO ASN ARG GLU SEQRES 8 A 543 LEU SER GLU ASP CYS LEU TYR LEU ASN VAL TRP THR PRO SEQRES 9 A 543 TYR PRO ARG PRO ALA SER PRO THR PRO VAL LEU ILE TRP SEQRES 10 A 543 ILE TYR GLY GLY GLY PHE TYR SER GLY ALA ALA SER LEU SEQRES 11 A 543 ASP VAL TYR ASP GLY ARG PHE LEU ALA GLN VAL GLU GLY SEQRES 12 A 543 ALA VAL LEU VAL SER MET ASN TYR ARG VAL GLY THR PHE SEQRES 13 A 543 GLY PHE LEU ALA LEU PRO GLY SER ARG GLU ALA PRO GLY SEQRES 14 A 543 ASN VAL GLY LEU LEU ASP GLN ARG LEU ALA LEU GLN TRP SEQRES 15 A 543 VAL GLN GLU ASN ILE ALA ALA PHE GLY GLY ASP PRO MET SEQRES 16 A 543 SER VAL THR LEU PHE GLY GLU SER ALA GLY ALA ALA SER SEQRES 17 A 543 VAL GLY MET HIS ILE LEU SER LEU PRO SER ARG SER LEU SEQRES 18 A 543 PHE HIS ARG ALA VAL LEU GLN SER GLY THR PRO ASN GLY SEQRES 19 A 543 PRO TRP ALA THR VAL SER ALA GLY GLU ALA ARG ARG ARG SEQRES 20 A 543 ALA THR LEU LEU ALA ARG LEU VAL GLY CYS PRO PRO GLY SEQRES 21 A 543 GLY ALA GLY GLY ASN ASP THR GLU LEU ILE ALA CYS LEU SEQRES 22 A 543 ARG THR ARG PRO ALA GLN ASP LEU VAL ASP HIS GLU TRP SEQRES 23 A 543 HIS VAL LEU PRO GLN GLU SER ILE PHE ARG PHE SER PHE SEQRES 24 A 543 VAL PRO VAL VAL ASP GLY ASP PHE LEU SER ASP THR PRO SEQRES 25 A 543 GLU ALA LEU ILE ASN THR GLY ASP PHE GLN ASP LEU GLN SEQRES 26 A 543 VAL LEU VAL GLY VAL VAL LYS ASP GLU GLY SER TYR PHE SEQRES 27 A 543 LEU VAL TYR GLY VAL PRO GLY PHE SER LYS ASP ASN GLU SEQRES 28 A 543 SER LEU ILE SER ARG ALA GLN PHE LEU ALA GLY VAL ARG SEQRES 29 A 543 ILE GLY VAL PRO GLN ALA SER ASP LEU ALA ALA GLU ALA SEQRES 30 A 543 VAL VAL LEU HIS TYR THR ASP TRP LEU HIS PRO GLU ASP SEQRES 31 A 543 PRO THR HIS LEU ARG ASP ALA MET SER ALA VAL VAL GLY SEQRES 32 A 543 ASP HIS ASN VAL VAL CYS PRO VAL ALA GLN LEU ALA GLY SEQRES 33 A 543 ARG LEU ALA ALA GLN GLY ALA ARG VAL TYR ALA TYR ILE SEQRES 34 A 543 PHE GLU HIS ARG ALA SER THR LEU THR TRP PRO LEU TRP SEQRES 35 A 543 MET GLY VAL PRO HIS GLY TYR GLU ILE GLU PHE ILE PHE SEQRES 36 A 543 GLY LEU PRO LEU ASP PRO SER LEU ASN TYR THR THR GLU SEQRES 37 A 543 GLU ARG ILE PHE ALA GLN ARG LEU MET LYS TYR TRP THR SEQRES 38 A 543 ASN PHE ALA ARG THR GLY ASP PRO ASN ASP PRO ARG ASP SEQRES 39 A 543 SER LYS SER PRO GLN TRP PRO PRO TYR THR THR ALA ALA SEQRES 40 A 543 GLN GLN TYR VAL SER LEU ASN LEU LYS PRO LEU GLU VAL SEQRES 41 A 543 ARG ARG GLY LEU ARG ALA GLN THR CYS ALA PHE TRP ASN SEQRES 42 A 543 ARG PHE LEU PRO LYS LEU LEU SER ALA THR SEQRES 1 B 543 GLU GLY ARG GLU ASP PRO GLN LEU LEU VAL ARG VAL ARG SEQRES 2 B 543 GLY GLY GLN LEU ARG GLY ILE ARG LEU LYS ALA PRO GLY SEQRES 3 B 543 GLY PRO VAL SER ALA PHE LEU GLY ILE PRO PHE ALA GLU SEQRES 4 B 543 PRO PRO VAL GLY SER ARG ARG PHE MET PRO PRO GLU PRO SEQRES 5 B 543 LYS ARG PRO TRP SER GLY VAL LEU ASP ALA THR THR PHE SEQRES 6 B 543 GLN ASN VAL CYS TYR GLN TYR VAL ASP THR LEU TYR PRO SEQRES 7 B 543 GLY PHE GLU GLY THR GLU MET TRP ASN PRO ASN ARG GLU SEQRES 8 B 543 LEU SER GLU ASP CYS LEU TYR LEU ASN VAL TRP THR PRO SEQRES 9 B 543 TYR PRO ARG PRO ALA SER PRO THR PRO VAL LEU ILE TRP SEQRES 10 B 543 ILE TYR GLY GLY GLY PHE TYR SER GLY ALA ALA SER LEU SEQRES 11 B 543 ASP VAL TYR ASP GLY ARG PHE LEU ALA GLN VAL GLU GLY SEQRES 12 B 543 ALA VAL LEU VAL SER MET ASN TYR ARG VAL GLY THR PHE SEQRES 13 B 543 GLY PHE LEU ALA LEU PRO GLY SER ARG GLU ALA PRO GLY SEQRES 14 B 543 ASN VAL GLY LEU LEU ASP GLN ARG LEU ALA LEU GLN TRP SEQRES 15 B 543 VAL GLN GLU ASN ILE ALA ALA PHE GLY GLY ASP PRO MET SEQRES 16 B 543 SER VAL THR LEU PHE GLY GLU SER ALA GLY ALA ALA SER SEQRES 17 B 543 VAL GLY MET HIS ILE LEU SER LEU PRO SER ARG SER LEU SEQRES 18 B 543 PHE HIS ARG ALA VAL LEU GLN SER GLY THR PRO ASN GLY SEQRES 19 B 543 PRO TRP ALA THR VAL SER ALA GLY GLU ALA ARG ARG ARG SEQRES 20 B 543 ALA THR LEU LEU ALA ARG LEU VAL GLY CYS PRO PRO GLY SEQRES 21 B 543 GLY ALA GLY GLY ASN ASP THR GLU LEU ILE ALA CYS LEU SEQRES 22 B 543 ARG THR ARG PRO ALA GLN ASP LEU VAL ASP HIS GLU TRP SEQRES 23 B 543 HIS VAL LEU PRO GLN GLU SER ILE PHE ARG PHE SER PHE SEQRES 24 B 543 VAL PRO VAL VAL ASP GLY ASP PHE LEU SER ASP THR PRO SEQRES 25 B 543 GLU ALA LEU ILE ASN THR GLY ASP PHE GLN ASP LEU GLN SEQRES 26 B 543 VAL LEU VAL GLY VAL VAL LYS ASP GLU GLY SER TYR PHE SEQRES 27 B 543 LEU VAL TYR GLY VAL PRO GLY PHE SER LYS ASP ASN GLU SEQRES 28 B 543 SER LEU ILE SER ARG ALA GLN PHE LEU ALA GLY VAL ARG SEQRES 29 B 543 ILE GLY VAL PRO GLN ALA SER ASP LEU ALA ALA GLU ALA SEQRES 30 B 543 VAL VAL LEU HIS TYR THR ASP TRP LEU HIS PRO GLU ASP SEQRES 31 B 543 PRO THR HIS LEU ARG ASP ALA MET SER ALA VAL VAL GLY SEQRES 32 B 543 ASP HIS ASN VAL VAL CYS PRO VAL ALA GLN LEU ALA GLY SEQRES 33 B 543 ARG LEU ALA ALA GLN GLY ALA ARG VAL TYR ALA TYR ILE SEQRES 34 B 543 PHE GLU HIS ARG ALA SER THR LEU THR TRP PRO LEU TRP SEQRES 35 B 543 MET GLY VAL PRO HIS GLY TYR GLU ILE GLU PHE ILE PHE SEQRES 36 B 543 GLY LEU PRO LEU ASP PRO SER LEU ASN TYR THR THR GLU SEQRES 37 B 543 GLU ARG ILE PHE ALA GLN ARG LEU MET LYS TYR TRP THR SEQRES 38 B 543 ASN PHE ALA ARG THR GLY ASP PRO ASN ASP PRO ARG ASP SEQRES 39 B 543 SER LYS SER PRO GLN TRP PRO PRO TYR THR THR ALA ALA SEQRES 40 B 543 GLN GLN TYR VAL SER LEU ASN LEU LYS PRO LEU GLU VAL SEQRES 41 B 543 ARG ARG GLY LEU ARG ALA GLN THR CYS ALA PHE TRP ASN SEQRES 42 B 543 ARG PHE LEU PRO LYS LEU LEU SER ALA THR MODRES 2H9Y ASN A 350 ASN GLYCOSYLATION SITE MODRES 2H9Y ASN A 464 ASN GLYCOSYLATION SITE MODRES 2H9Y ASN B 350 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET FUC C 2 10 HET NAG A 701 14 HET NAF A 951 16 HET P6G A 901 19 HET PG4 A 902 13 HET NAG B 601 14 HET NAF B 952 16 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM NAF M-(N,N,N-TRIMETHYLAMMONIO)-2,2,2-TRIFLUORO-1,1- HETNAM 2 NAF DIHYDROXYETHYLBENZENE HETNAM P6G HEXAETHYLENE GLYCOL HETNAM PG4 TETRAETHYLENE GLYCOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN P6G POLYETHYLENE GLYCOL PEG400 FORMUL 3 NAG 3(C8 H15 N O6) FORMUL 3 FUC C6 H12 O5 FORMUL 5 NAF 2(C11 H15 F3 N O2 1+) FORMUL 6 P6G C12 H26 O7 FORMUL 7 PG4 C8 H18 O5 FORMUL 10 HOH *422(H2 O) HELIX 1 1 ASP A 5 GLN A 7 5 3 HELIX 2 2 VAL A 42 ARG A 46 5 5 HELIX 3 3 PHE A 80 MET A 85 1 6 HELIX 4 4 LEU A 130 ASP A 134 5 5 HELIX 5 5 GLY A 135 GLY A 143 1 9 HELIX 6 6 VAL A 153 LEU A 159 1 7 HELIX 7 7 ASN A 170 ILE A 187 1 18 HELIX 8 8 ALA A 188 PHE A 190 5 3 HELIX 9 9 SER A 203 SER A 215 1 13 HELIX 10 10 SER A 215 SER A 220 1 6 HELIX 11 11 SER A 240 VAL A 255 1 16 HELIX 12 12 ASN A 265 THR A 275 1 11 HELIX 13 13 PRO A 277 GLU A 285 1 9 HELIX 14 14 TRP A 286 LEU A 289 5 4 HELIX 15 15 THR A 311 GLY A 319 1 9 HELIX 16 16 GLY A 335 VAL A 340 1 6 HELIX 17 17 SER A 355 VAL A 367 1 13 HELIX 18 18 SER A 371 THR A 383 1 13 HELIX 19 19 ASP A 390 VAL A 407 1 18 HELIX 20 20 VAL A 407 GLN A 421 1 15 HELIX 21 21 PRO A 440 GLY A 444 5 5 HELIX 22 22 GLU A 450 PHE A 455 1 6 HELIX 23 23 GLY A 456 ASN A 464 5 9 HELIX 24 24 THR A 466 GLY A 487 1 22 HELIX 25 25 ARG A 525 ARG A 534 1 10 HELIX 26 26 ARG A 534 SER A 541 1 8 HELIX 27 27 ASP B 5 GLN B 7 5 3 HELIX 28 28 VAL B 42 ARG B 46 5 5 HELIX 29 29 PHE B 80 MET B 85 1 6 HELIX 30 30 LEU B 130 ASP B 134 5 5 HELIX 31 31 GLY B 135 GLY B 143 1 9 HELIX 32 32 VAL B 153 LEU B 159 1 7 HELIX 33 33 ASN B 170 ILE B 187 1 18 HELIX 34 34 ALA B 188 PHE B 190 5 3 HELIX 35 35 SER B 203 SER B 215 1 13 HELIX 36 36 SER B 215 SER B 220 1 6 HELIX 37 37 SER B 240 VAL B 255 1 16 HELIX 38 38 ASN B 265 THR B 275 1 11 HELIX 39 39 PRO B 277 ASP B 283 1 7 HELIX 40 40 HIS B 284 LEU B 289 5 6 HELIX 41 41 THR B 311 GLY B 319 1 9 HELIX 42 42 GLY B 335 VAL B 340 1 6 HELIX 43 43 SER B 355 VAL B 367 1 13 HELIX 44 44 SER B 371 THR B 383 1 13 HELIX 45 45 ASP B 390 VAL B 407 1 18 HELIX 46 46 VAL B 407 GLN B 421 1 15 HELIX 47 47 PRO B 440 GLY B 444 5 5 HELIX 48 48 GLU B 450 PHE B 455 1 6 HELIX 49 49 GLY B 456 ASN B 464 5 9 HELIX 50 50 THR B 466 GLY B 487 1 22 HELIX 51 51 ARG B 525 ARG B 534 1 10 HELIX 52 52 ARG B 534 SER B 541 1 8 SHEET 1 A 3 LEU A 9 VAL A 12 0 SHEET 2 A 3 GLY A 15 ARG A 18 -1 O LEU A 17 N VAL A 10 SHEET 3 A 3 VAL A 59 ASP A 61 1 O LEU A 60 N GLN A 16 SHEET 1 B11 ILE A 20 ALA A 24 0 SHEET 2 B11 GLY A 27 PRO A 36 -1 O VAL A 29 N LEU A 22 SHEET 3 B11 TYR A 98 PRO A 104 -1 O VAL A 101 N PHE A 32 SHEET 4 B11 VAL A 145 MET A 149 -1 O SER A 148 N ASN A 100 SHEET 5 B11 THR A 112 ILE A 118 1 N LEU A 115 O VAL A 147 SHEET 6 B11 GLY A 192 GLU A 202 1 O SER A 196 N VAL A 114 SHEET 7 B11 ARG A 224 GLN A 228 1 O ARG A 224 N LEU A 199 SHEET 8 B11 GLN A 325 VAL A 331 1 O LEU A 327 N LEU A 227 SHEET 9 B11 ARG A 424 PHE A 430 1 O ARG A 424 N VAL A 326 SHEET 10 B11 GLN A 509 LEU A 513 1 O LEU A 513 N ILE A 429 SHEET 11 B11 GLU A 519 ARG A 522 -1 O ARG A 521 N TYR A 510 SHEET 1 C 2 VAL A 68 CYS A 69 0 SHEET 2 C 2 LEU A 92 SER A 93 1 O SER A 93 N VAL A 68 SHEET 1 D 3 LEU B 9 VAL B 12 0 SHEET 2 D 3 GLY B 15 ARG B 18 -1 O LEU B 17 N VAL B 10 SHEET 3 D 3 VAL B 59 ASP B 61 1 O LEU B 60 N GLN B 16 SHEET 1 E11 ILE B 20 ALA B 24 0 SHEET 2 E11 GLY B 27 PRO B 36 -1 O ALA B 31 N ILE B 20 SHEET 3 E11 TYR B 98 PRO B 104 -1 O LEU B 99 N ILE B 35 SHEET 4 E11 VAL B 145 MET B 149 -1 O SER B 148 N ASN B 100 SHEET 5 E11 THR B 112 ILE B 118 1 N LEU B 115 O VAL B 147 SHEET 6 E11 GLY B 192 GLU B 202 1 O THR B 198 N ILE B 116 SHEET 7 E11 ARG B 224 GLN B 228 1 O GLN B 228 N GLY B 201 SHEET 8 E11 GLN B 325 VAL B 331 1 O LEU B 327 N LEU B 227 SHEET 9 E11 ARG B 424 PHE B 430 1 O TYR B 426 N VAL B 328 SHEET 10 E11 GLN B 509 LEU B 513 1 O LEU B 513 N ILE B 429 SHEET 11 E11 GLU B 519 ARG B 522 -1 O ARG B 521 N TYR B 510 SHEET 1 F 2 VAL B 68 CYS B 69 0 SHEET 2 F 2 LEU B 92 SER B 93 1 O SER B 93 N VAL B 68 SSBOND 1 CYS A 69 CYS A 96 1555 1555 2.08 SSBOND 2 CYS A 257 CYS A 272 1555 1555 2.11 SSBOND 3 CYS A 409 CYS A 529 1555 1555 2.06 SSBOND 4 CYS B 69 CYS B 96 1555 1555 2.05 SSBOND 5 CYS B 257 CYS B 272 1555 1555 2.09 SSBOND 6 CYS B 409 CYS B 529 1555 1555 2.07 LINK OG SER A 203 C1' NAF A 951 1555 1555 1.85 LINK ND2 ASN A 350 C1 NAG C 1 1555 1555 1.47 LINK ND2 ASN A 464 C1 NAG A 701 1555 1555 1.45 LINK OG SER B 203 C1' NAF B 952 1555 1555 1.88 LINK ND2 ASN B 350 C1 NAG B 601 1555 1555 1.47 LINK O6 NAG C 1 C1 FUC C 2 1555 1555 1.45 CISPEP 1 TYR A 105 PRO A 106 0 -5.03 CISPEP 2 TYR B 105 PRO B 106 0 -1.58 CISPEP 3 CYS B 257 PRO B 258 0 2.53 CISPEP 4 SER B 497 PRO B 498 0 -10.04 CRYST1 79.013 111.394 226.934 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012656 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008977 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004407 0.00000