HEADER CELL ADHESION, STRUCTURAL PROTEIN 12-JUN-06 2HA1 TITLE COMPLEX OF THE FIRST AND SECOND TYPE III DOMAINS OF HUMAN FIBRONECTIN TITLE 2 IN SOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBRONECTIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FIBRONECTIN FIRST AND SECOND TYPE III DOMAIN PAIR (1F3- COMPND 5 2F3); COMPND 6 SYNONYM: FN, COLD-INSOLUBLE GLOBULIN, CIG; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FN1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RP; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-2 KEYWDS BETA SANDWICH, PROTEIN-PROTEIN COMPLEX, RIGID BODY DOCKING, CELL KEYWDS 2 ADHESION, STRUCTURAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 39 AUTHOR I.VAKONAKIS,I.D.CAMPBELL REVDAT 5 09-MAR-22 2HA1 1 REMARK REVDAT 4 09-JUN-09 2HA1 1 REVDAT REVDAT 3 24-FEB-09 2HA1 1 VERSN REVDAT 2 20-JAN-09 2HA1 1 JRNL REVDAT 1 10-APR-07 2HA1 0 JRNL AUTH I.VAKONAKIS,D.STAUNTON,L.M.ROONEY,I.D.CAMPBELL JRNL TITL INTERDOMAIN ASSOCIATION IN FIBRONECTIN: INSIGHT INTO CRYPTIC JRNL TITL 2 SITES AND FIBRILLOGENESIS. JRNL REF EMBO J. V. 26 2575 2007 JRNL REFN ISSN 0261-4189 JRNL PMID 17464288 JRNL DOI 10.1038/SJ.EMBOJ.7601694 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : OMEGA BETA 6.0.3B2, XPLOR-NIH 2.12 REMARK 3 AUTHORS : GE/BRUKER (OMEGA), SCHWIETERS, KUSZEWSKI, TJANDRA, REMARK 3 CLORE NIH/NIDDK/LCP (XPLOR-NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE WAS CALCULATED BY RIGID REMARK 3 BODY DOCKING USING AMBIGUOUS INTERDOMAIN NOE-LIKE RESTRAINTS REMARK 3 DERIVED FROM CHEMICAL SHIFT MAPPING OF THE INTERFACE AND REMARK 3 RESIDUAL DIPOLAR COUPLINGS OF THE COMPLEX. 7 RESIDUES FROM EACH REMARK 3 DOMAIN WERE USED FOR THE AMBIGUOUS NOES AS WELL AS 72 RDCS REMARK 3 TOTAL. THE REFINEMENT PROTOCOL WAS SIMILAR TO THAT OF CLORE & REMARK 3 SCHWIETERS, JACS 125, 2902 REMARK 4 REMARK 4 2HA1 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1000038117. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 150MM NACL, 20MM NA2HPO3 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0MM 1F3-2F3 U-15N, 150MM NACL, REMARK 210 20MM NAPI PH 7.0, 95% H2O, 5% REMARK 210 D2O; 1.0MM 1F3-2F3 U-15N, 13C, REMARK 210 150MM NACL, 20MM NAPI PH 7.0, 95% REMARK 210 H2O, 5% D2O; 0.6MM 1F3-2F3 U- REMARK 210 15N, 150MM NACL, 20MM NAPI PH REMARK 210 7.0, 4% RADIALLY COMPRESSED REMARK 210 POLYACRYLAMIDE GEL, 95% H2O, 5% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : IPAP-HSQC; BACKBONE CHEMICAL REMARK 210 SHIFT ASSIGNMENTS REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : HOME BUILD REMARK 210 SPECTROMETER MANUFACTURER : HOME-BUILT REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.3 REV2005.319.11.22, REMARK 210 PIPP 4.3.7, XPLOR-NIH 2.12 REMARK 210 METHOD USED : RIGID BODY DOCKING WITH REMARK 210 TORSIONAL FLEXIBILITY AT THE REMARK 210 INTERFACIAL AMINO ACID SIDECHAINS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 39 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES FORMING A SINGLE REMARK 210 CLUSTER AFTER IMPOSING A 50% REMARK 210 LOWEST ENERGY CUTOFF REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 134 H SER A 136 0.84 REMARK 500 OE1 GLU A 151 HH21 ARG A 176 0.89 REMARK 500 CD GLU A 151 HH21 ARG A 176 1.09 REMARK 500 OD1 ASP A 153 H GLU A 154 1.15 REMARK 500 H LYS A 64 OH TYR A 69 1.31 REMARK 500 O VAL A 133 H ALA A 135 1.33 REMARK 500 HG SER A 126 O LEU A 172 1.34 REMARK 500 H SER A 140 O ILE A 185 1.35 REMARK 500 O PRO A 27 H HIS A 29 1.36 REMARK 500 O THR A 96 HG1 THR A 99 1.42 REMARK 500 H1 SER A 1 OE1 GLU A 83 1.44 REMARK 500 O GLU A 5 H ASN A 23 1.47 REMARK 500 H VAL A 4 OG1 THR A 85 1.50 REMARK 500 H PHE A 142 O LEU A 160 1.53 REMARK 500 O PRO A 12 HG SER A 13 1.53 REMARK 500 O PHE A 128 HD21 ASN A 168 1.54 REMARK 500 OD1 ASP A 153 OE1 GLU A 154 1.61 REMARK 500 OD1 ASP A 153 CD GLU A 154 1.64 REMARK 500 O GLY A 152 O ASP A 153 1.69 REMARK 500 O SER A 134 N SER A 136 1.77 REMARK 500 OE1 GLU A 151 NH2 ARG A 176 1.82 REMARK 500 OE2 GLU A 151 NH2 ARG A 176 1.83 REMARK 500 CD GLU A 151 NH2 ARG A 176 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 3 142.46 -35.56 REMARK 500 1 GLU A 10 31.58 36.07 REMARK 500 1 SER A 13 125.50 149.64 REMARK 500 1 PRO A 25 173.95 -50.68 REMARK 500 1 SER A 28 42.21 -63.67 REMARK 500 1 SER A 31 -72.94 -106.90 REMARK 500 1 LYS A 40 81.18 -46.96 REMARK 500 1 ASN A 41 -20.67 -160.23 REMARK 500 1 PRO A 52 151.75 -46.27 REMARK 500 1 TYR A 58 -169.30 -114.84 REMARK 500 1 GLN A 78 88.55 -39.10 REMARK 500 1 THR A 94 -123.56 144.35 REMARK 500 1 VAL A 98 -0.44 61.05 REMARK 500 1 LEU A 113 151.59 57.16 REMARK 500 1 ALA A 115 -175.71 43.64 REMARK 500 1 GLU A 122 -134.44 -103.60 REMARK 500 1 ALA A 125 -124.18 32.17 REMARK 500 1 SER A 126 4.78 48.33 REMARK 500 1 SER A 134 58.37 -57.97 REMARK 500 1 ALA A 135 24.57 -38.21 REMARK 500 1 SER A 136 128.76 179.11 REMARK 500 1 GLU A 150 -69.69 -109.85 REMARK 500 1 ASP A 153 -171.73 -27.99 REMARK 500 2 PRO A 3 142.41 -35.73 REMARK 500 2 GLU A 10 31.68 36.06 REMARK 500 2 SER A 13 125.51 149.64 REMARK 500 2 PRO A 25 173.91 -50.54 REMARK 500 2 SER A 28 42.22 -63.68 REMARK 500 2 SER A 31 -72.92 -106.95 REMARK 500 2 LYS A 40 81.03 -46.90 REMARK 500 2 ASN A 41 -20.64 -160.14 REMARK 500 2 PRO A 52 151.74 -46.30 REMARK 500 2 TYR A 58 -169.35 -114.85 REMARK 500 2 GLN A 78 88.64 -39.21 REMARK 500 2 SER A 100 -144.71 50.27 REMARK 500 2 SER A 126 19.64 41.03 REMARK 500 2 SER A 134 58.30 -57.93 REMARK 500 2 ALA A 135 24.54 -38.14 REMARK 500 2 SER A 136 128.69 179.16 REMARK 500 2 GLU A 150 -69.67 -109.79 REMARK 500 2 ASP A 153 -171.71 -27.95 REMARK 500 3 PRO A 3 142.40 -35.66 REMARK 500 3 GLU A 10 31.53 36.14 REMARK 500 3 SER A 13 125.53 149.52 REMARK 500 3 PRO A 25 173.97 -50.69 REMARK 500 3 SER A 28 42.17 -63.64 REMARK 500 3 SER A 31 -72.95 -106.93 REMARK 500 3 LYS A 40 81.15 -47.00 REMARK 500 3 ASN A 41 -20.70 -160.16 REMARK 500 3 PRO A 52 151.70 -46.26 REMARK 500 REMARK 500 THIS ENTRY HAS 806 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7127 RELATED DB: BMRB REMARK 900 COMPLETE CHEMICAL SHIFT ASSIGNMENTS OF THE SECOND TYPE III DOMAIN REMARK 900 OF HUMAN FIBRONECTIN REMARK 900 RELATED ID: 7128 RELATED DB: BMRB REMARK 900 BACKBONE CHEMICAL SHIFT ASSIGNMENTS OF THE FIRST AND SECOND TYPE REMARK 900 III DOMAIN PAIR OF HUMAN FIBRONECTIN REMARK 900 RELATED ID: 2H41 RELATED DB: PDB REMARK 900 AVERAGE MINIMIZED STRUCTURE OF THE SECOND TYPE III DOMAIN OF HUMAN REMARK 900 FIBRONECTIN REMARK 900 RELATED ID: 2H45 RELATED DB: PDB REMARK 900 BUNDLE OF STRUCTURES FOR THE SECOND TYPE III DOMAIN OF HUMAN REMARK 900 FIBRONECTIN REMARK 900 RELATED ID: 1OWW RELATED DB: PDB REMARK 900 BUNDLE OF STRUCTURES FOR THE FIRST TYPE III DOMAIN OF HUMAN REMARK 900 FIBRONECTIN DBREF 2HA1 A 1 201 UNP P02751 FINC_HUMAN 609 809 SEQRES 1 A 201 SER GLY PRO VAL GLU VAL PHE ILE THR GLU THR PRO SER SEQRES 2 A 201 GLN PRO ASN SER HIS PRO ILE GLN TRP ASN ALA PRO GLN SEQRES 3 A 201 PRO SER HIS ILE SER LYS TYR ILE LEU ARG TRP ARG PRO SEQRES 4 A 201 LYS ASN SER VAL GLY ARG TRP LYS GLU ALA THR ILE PRO SEQRES 5 A 201 GLY HIS LEU ASN SER TYR THR ILE LYS GLY LEU LYS PRO SEQRES 6 A 201 GLY VAL VAL TYR GLU GLY GLN LEU ILE SER ILE GLN GLN SEQRES 7 A 201 TYR GLY HIS GLN GLU VAL THR ARG PHE ASP PHE THR THR SEQRES 8 A 201 THR SER THR SER THR PRO VAL THR SER ASN THR VAL THR SEQRES 9 A 201 GLY GLU THR THR PRO PHE SER PRO LEU VAL ALA THR SER SEQRES 10 A 201 GLU SER VAL THR GLU ILE THR ALA SER SER PHE VAL VAL SEQRES 11 A 201 SER TRP VAL SER ALA SER ASP THR VAL SER GLY PHE ARG SEQRES 12 A 201 VAL GLU TYR GLU LEU SER GLU GLU GLY ASP GLU PRO GLN SEQRES 13 A 201 TYR LEU ASP LEU PRO SER THR ALA THR SER VAL ASN ILE SEQRES 14 A 201 PRO ASP LEU LEU PRO GLY ARG LYS TYR ILE VAL ASN VAL SEQRES 15 A 201 TYR GLN ILE SER GLU ASP GLY GLU GLN SER LEU ILE LEU SEQRES 16 A 201 SER THR SER GLN THR THR SHEET 1 A 3 GLU A 5 PHE A 7 0 SHEET 2 A 3 HIS A 18 ASN A 23 -1 O ASN A 23 N GLU A 5 SHEET 3 A 3 SER A 57 ILE A 60 -1 O ILE A 60 N HIS A 18 SHEET 1 B 4 LYS A 47 ILE A 51 0 SHEET 2 B 4 LYS A 32 PRO A 39 -1 N TYR A 33 O ILE A 51 SHEET 3 B 4 VAL A 67 ILE A 76 -1 O ILE A 74 N ILE A 34 SHEET 4 B 4 GLN A 82 THR A 91 -1 O PHE A 87 N GLY A 71 SHEET 1 C 2 PHE A 128 SER A 131 0 SHEET 2 C 2 SER A 166 ILE A 169 -1 O ILE A 169 N PHE A 128 SHEET 1 D 4 GLN A 156 PRO A 161 0 SHEET 2 D 4 VAL A 139 LEU A 148 -1 N PHE A 142 O LEU A 160 SHEET 3 D 4 LYS A 177 SER A 186 -1 O ILE A 185 N SER A 140 SHEET 4 D 4 GLN A 191 THR A 200 -1 O LEU A 195 N VAL A 182 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1