HEADER DNA 14-JUN-06 2HBN TITLE CRYSTALLIZATION OF THE TL+-FORM OF THE OXYTRICHA NOVA G-QUADRUPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3'; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN STERKIELLA NOVA SOURCE 4 TELOMERE KEYWDS DEOXYRIBONUCLEIC ACID, G-QUADRUPLEX, THALLIUM, DNA EXPDTA X-RAY DIFFRACTION AUTHOR M.L.GILL,S.A.STROBEL,J.P.LORIA REVDAT 5 30-AUG-23 2HBN 1 REMARK LINK REVDAT 4 18-OCT-17 2HBN 1 REMARK REVDAT 3 24-FEB-09 2HBN 1 VERSN REVDAT 2 24-OCT-06 2HBN 1 JRNL REVDAT 1 19-SEP-06 2HBN 0 JRNL AUTH M.L.GILL,S.A.STROBEL,J.P.LORIA JRNL TITL CRYSTALLIZATION AND CHARACTERIZATION OF THE THALLIUM FORM OF JRNL TITL 2 THE OXYTRICHA NOVA G-QUADRUPLEX. JRNL REF NUCLEIC ACIDS RES. V. 34 4506 2006 JRNL REFN ISSN 0305-1048 JRNL PMID 16945956 JRNL DOI 10.1093/NAR/GKL616 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 18241 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 930 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1173 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.3140 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.3960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 1012 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 44 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : 0.29000 REMARK 3 B33 (A**2) : -0.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.136 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.099 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.774 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1136 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1760 ; 1.903 ; 3.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 188 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 528 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 331 ; 0.180 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 627 ; 0.283 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 53 ; 0.117 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 6 ; 0.112 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.230 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1760 ; 2.166 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1760 ; 2.745 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1760 ; 1.860 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 59 ; 9.487 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 1012 ; 3.081 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2HBN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1000038166. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18241 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 43.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.18700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.00000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1JRN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 MM DNA, 50 MM POTASSIUM REMARK 280 CACODYLATE, 10 MM MAGNESIUM ACETATE, 40 MM POTASSIUM ACETATE, 5% REMARK 280 (V/V) MPD MIXED WITH EQUAL AMOUNT OF 35% MPD, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 13.68750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.09900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.10500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.09900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 13.68750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 24.10500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG A 2 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DT A 5 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DG A 11 O5' - C5' - C4' ANGL. DEV. = -5.6 DEGREES REMARK 500 DG B 1 C6 - N1 - C2 ANGL. DEV. = -3.9 DEGREES REMARK 500 DG B 1 N3 - C4 - C5 ANGL. DEV. = -3.3 DEGREES REMARK 500 DG B 1 C5 - C6 - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 DG B 1 N1 - C6 - O6 ANGL. DEV. = -3.8 DEGREES REMARK 500 DG B 2 C5 - C6 - O6 ANGL. DEV. = 4.3 DEGREES REMARK 500 DG B 4 O4' - C1' - N9 ANGL. DEV. = 5.7 DEGREES REMARK 500 DT B 6 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG B 10 C5 - C6 - O6 ANGL. DEV. = -3.7 DEGREES REMARK 500 DG B 11 N1 - C6 - O6 ANGL. DEV. = -4.2 DEGREES REMARK 500 DG B 11 C5 - C6 - O6 ANGL. DEV. = 3.8 DEGREES REMARK 500 DG B 12 N9 - C4 - C5 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG C 1 N1 - C6 - O6 ANGL. DEV. = -4.3 DEGREES REMARK 500 DG C 4 N1 - C6 - O6 ANGL. DEV. = -3.6 DEGREES REMARK 500 DT C 5 O4' - C1' - N1 ANGL. DEV. = 4.0 DEGREES REMARK 500 DT C 6 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 DG C 11 O5' - C5' - C4' ANGL. DEV. = -9.0 DEGREES REMARK 500 DG D 2 N1 - C6 - O6 ANGL. DEV. = -4.5 DEGREES REMARK 500 DG D 3 O5' - C5' - C4' ANGL. DEV. = -6.5 DEGREES REMARK 500 DT D 5 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG D 9 C5 - C6 - N1 ANGL. DEV. = 3.9 DEGREES REMARK 500 DG D 9 N3 - C4 - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 DG D 12 O4' - C1' - N9 ANGL. DEV. = -4.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 TL A 116 TL REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 1 O6 REMARK 620 2 DG A 2 O6 69.9 REMARK 620 3 DG A 11 O6 163.9 98.9 REMARK 620 4 DG A 12 O6 109.0 173.1 83.6 REMARK 620 5 DG B 3 O6 95.1 62.9 69.1 123.9 REMARK 620 6 DG B 4 O6 71.7 118.7 105.9 66.4 75.3 REMARK 620 7 DG B 9 O6 73.9 104.6 121.1 68.8 166.1 108.3 REMARK 620 8 DG B 10 O6 114.2 67.6 69.5 107.7 106.8 173.2 71.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 TL B 113 TL REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 1 O6 REMARK 620 2 DG A 12 O6 96.2 REMARK 620 3 DG B 4 O6 58.7 63.7 REMARK 620 4 DT B 5 O2 86.3 122.1 69.1 REMARK 620 5 DT B 7 O2 74.7 154.8 125.2 81.4 REMARK 620 6 DG B 9 O6 65.5 71.7 100.5 150.6 83.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 TL A 114 TL REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 2 O6 REMARK 620 2 DG A 3 O6 93.0 REMARK 620 3 DG A 10 O6 127.5 106.5 REMARK 620 4 DG A 11 O6 108.3 128.0 97.1 REMARK 620 5 DG B 2 O6 155.8 66.7 73.3 77.3 REMARK 620 6 DG B 3 O6 70.7 75.8 160.7 68.2 90.8 REMARK 620 7 DG B 10 O6 74.3 163.7 74.8 66.9 127.8 108.4 REMARK 620 8 DG B 11 O6 75.1 67.9 68.8 162.5 106.9 127.8 98.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 TL A 115 TL REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 3 O6 REMARK 620 2 DG A 4 O6 75.1 REMARK 620 3 DG A 9 O6 166.3 107.8 REMARK 620 4 DG A 10 O6 102.4 173.3 76.1 REMARK 620 5 DG B 1 O6 94.8 70.3 74.2 116.3 REMARK 620 6 DG B 2 O6 61.8 118.1 106.1 64.9 71.4 REMARK 620 7 DG B 11 O6 68.8 106.5 121.5 66.8 163.4 97.3 REMARK 620 8 DG B 12 O6 125.0 71.4 67.8 105.9 112.6 170.4 80.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 TL A 117 TL REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 4 O6 REMARK 620 2 DT A 5 O2 71.6 REMARK 620 3 DT A 7 O2 126.5 80.9 REMARK 620 4 DG A 9 O6 99.7 151.3 83.2 REMARK 620 5 HOH A 118 O 94.1 89.9 131.5 118.4 REMARK 620 6 DG B 1 O6 60.9 87.6 73.2 64.9 154.3 REMARK 620 7 DG B 12 O6 66.0 130.0 146.8 63.7 68.6 93.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 TL C 119 TL REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG C 1 O6 REMARK 620 2 DG C 2 O6 66.7 REMARK 620 3 DG C 11 O6 162.8 99.1 REMARK 620 4 DG C 12 O6 111.5 170.0 84.1 REMARK 620 5 DG D 3 O6 100.8 63.5 63.0 125.9 REMARK 620 6 DG D 4 O6 74.4 116.5 105.7 71.2 77.7 REMARK 620 7 DG D 9 O6 72.9 102.3 121.4 68.2 165.7 111.9 REMARK 620 8 DG D 10 O6 114.0 66.5 65.4 106.9 97.2 171.1 74.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 TL D 121 TL REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG C 1 O6 REMARK 620 2 DG C 12 O6 91.4 REMARK 620 3 DG D 4 O6 54.8 62.9 REMARK 620 4 DT D 5 O2 85.0 126.2 72.0 REMARK 620 5 DT D 7 O2 71.8 149.1 120.2 79.1 REMARK 620 6 DG D 9 O6 59.7 67.8 92.2 143.6 81.3 REMARK 620 7 HOH D 122 O 155.1 76.3 100.4 85.0 128.2 130.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 TL C 118 TL REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG C 2 O6 REMARK 620 2 DG C 3 O6 92.8 REMARK 620 3 DG C 10 O6 125.7 105.9 REMARK 620 4 DG C 11 O6 105.7 130.5 99.6 REMARK 620 5 DG D 2 O6 160.0 70.9 71.6 78.4 REMARK 620 6 DG D 3 O6 72.4 78.2 160.4 65.2 92.4 REMARK 620 7 DG D 10 O6 74.5 161.3 72.3 67.2 124.0 109.9 REMARK 620 8 DG D 11 O6 72.5 65.6 70.3 163.7 109.1 127.3 97.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 TL C 120 TL REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG C 3 O6 REMARK 620 2 DG C 4 O6 72.7 REMARK 620 3 DG C 9 O6 169.6 107.0 REMARK 620 4 DG C 10 O6 105.4 172.0 76.4 REMARK 620 5 DG D 1 O6 98.4 72.9 71.9 115.2 REMARK 620 6 DG D 2 O6 69.9 116.9 101.9 68.7 64.9 REMARK 620 7 DG D 11 O6 66.3 102.9 123.1 69.5 164.6 106.0 REMARK 620 8 DG D 12 O6 119.2 71.7 69.5 103.3 115.5 169.9 75.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 TL C 122 TL REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG C 4 O6 REMARK 620 2 DT C 5 O2 72.4 REMARK 620 3 DT C 7 O2 125.0 78.0 REMARK 620 4 DG C 9 O6 95.3 150.9 88.8 REMARK 620 5 DG D 1 O6 62.9 88.0 70.9 63.2 REMARK 620 6 DG D 12 O6 64.0 127.6 152.1 63.4 96.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TL B 113 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TL A 114 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TL A 115 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TL A 116 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TL A 117 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TL C 118 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TL C 119 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TL C 120 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TL D 121 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TL C 122 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JRN RELATED DB: PDB REMARK 900 CRYSATL STRUCTURE OF ORTHORHOMBIC FORM OF OXYTRICHA TELOMERIC DNA REMARK 900 AT 2.0 A REMARK 900 RELATED ID: 2AKG RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE THALLIUM FORM OF THE G-QUADRUPLEX FROM REMARK 900 OXYTRICHA NOVA, D(G4T4G4)2 DBREF 2HBN A 1 12 PDB 2HBN 2HBN 1 12 DBREF 2HBN B 1 12 PDB 2HBN 2HBN 1 12 DBREF 2HBN C 1 12 PDB 2HBN 2HBN 1 12 DBREF 2HBN D 1 12 PDB 2HBN 2HBN 1 12 SEQRES 1 A 12 DG DG DG DG DT DT DT DT DG DG DG DG SEQRES 1 B 12 DG DG DG DG DT DT DT DT DG DG DG DG SEQRES 1 C 12 DG DG DG DG DT DT DT DT DG DG DG DG SEQRES 1 D 12 DG DG DG DG DT DT DT DT DG DG DG DG HET TL A 114 1 HET TL A 115 1 HET TL A 116 1 HET TL A 117 1 HET TL B 113 1 HET TL C 118 1 HET TL C 119 1 HET TL C 120 1 HET TL C 122 1 HET TL D 121 1 HETNAM TL THALLIUM (I) ION FORMUL 5 TL 10(TL 1+) FORMUL 15 HOH *44(H2 O) LINK O6 DG A 1 TL TL A 116 1555 1555 2.68 LINK O6 DG A 1 TL TL B 113 1555 1555 3.36 LINK O6 DG A 2 TL TL A 114 1555 1555 2.56 LINK O6 DG A 2 TL TL A 116 1555 1555 3.10 LINK O6 DG A 3 TL TL A 114 1555 1555 2.88 LINK O6 DG A 3 TL TL A 115 1555 1555 2.85 LINK O6 DG A 4 TL TL A 115 1555 1555 2.86 LINK O6 DG A 4 TL TL A 117 1555 1555 3.07 LINK O2 DT A 5 TL TL A 117 1555 1555 2.65 LINK O2 DT A 7 TL TL A 117 1555 1555 2.58 LINK O6 DG A 9 TL TL A 115 1555 1555 2.86 LINK O6 DG A 9 TL TL A 117 1555 1555 2.98 LINK O6 DG A 10 TL TL A 114 1555 1555 2.84 LINK O6 DG A 10 TL TL A 115 1555 1555 3.02 LINK O6 DG A 11 TL TL A 114 1555 1555 2.95 LINK O6 DG A 11 TL TL A 116 1555 1555 2.78 LINK O6 DG A 12 TL TL A 116 1555 1555 2.93 LINK O6 DG A 12 TL TL B 113 1555 1555 2.75 LINK TL TL A 114 O6 DG B 2 1555 1555 2.54 LINK TL TL A 114 O6 DG B 3 1555 1555 2.96 LINK TL TL A 114 O6 DG B 10 1555 1555 3.00 LINK TL TL A 114 O6 DG B 11 1555 1555 2.91 LINK TL TL A 115 O6 DG B 1 1555 1555 2.67 LINK TL TL A 115 O6 DG B 2 1555 1555 2.97 LINK TL TL A 115 O6 DG B 11 1555 1555 2.86 LINK TL TL A 115 O6 DG B 12 1555 1555 2.79 LINK TL TL A 116 O6 DG B 3 1555 1555 3.05 LINK TL TL A 116 O6 DG B 4 1555 1555 2.77 LINK TL TL A 116 O6 DG B 9 1555 1555 3.06 LINK TL TL A 116 O6 DG B 10 1555 1555 2.97 LINK TL TL A 117 O HOH A 118 1555 1555 3.09 LINK TL TL A 117 O6 DG B 1 1555 1555 3.22 LINK TL TL A 117 O6 DG B 12 1555 1555 2.99 LINK O6 DG B 4 TL TL B 113 1555 1555 3.13 LINK O2 DT B 5 TL TL B 113 1555 1555 2.68 LINK O2 DT B 7 TL TL B 113 1555 1555 2.53 LINK O6 DG B 9 TL TL B 113 1555 1555 3.02 LINK O6 DG C 1 TL TL C 119 1555 1555 2.53 LINK O6 DG C 1 TL TL D 121 1555 1555 3.45 LINK O6 DG C 2 TL TL C 118 1555 1555 2.66 LINK O6 DG C 2 TL TL C 119 1555 1555 3.02 LINK O6 DG C 3 TL TL C 118 1555 1555 2.97 LINK O6 DG C 3 TL TL C 120 1555 1555 2.91 LINK O6 DG C 4 TL TL C 120 1555 1555 2.82 LINK O6 DG C 4 TL TL C 122 1555 1555 3.13 LINK O2 DT C 5 TL TL C 122 1555 1555 2.75 LINK O2 DT C 7 TL TL C 122 1555 1555 2.51 LINK O6 DG C 9 TL TL C 120 1555 1555 2.74 LINK O6 DG C 9 TL TL C 122 1555 1555 2.91 LINK O6 DG C 10 TL TL C 118 1555 1555 2.89 LINK O6 DG C 10 TL TL C 120 1555 1555 2.96 LINK O6 DG C 11 TL TL C 118 1555 1555 2.86 LINK O6 DG C 11 TL TL C 119 1555 1555 2.75 LINK O6 DG C 12 TL TL C 119 1555 1555 2.91 LINK O6 DG C 12 TL TL D 121 1555 1555 2.81 LINK TL TL C 118 O6 DG D 2 1555 1555 2.84 LINK TL TL C 118 O6 DG D 3 1555 1555 2.63 LINK TL TL C 118 O6 DG D 10 1555 1555 2.86 LINK TL TL C 118 O6 DG D 11 1555 1555 3.09 LINK TL TL C 119 O6 DG D 3 1555 1555 2.91 LINK TL TL C 119 O6 DG D 4 1555 1555 2.61 LINK TL TL C 119 O6 DG D 9 1555 1555 2.89 LINK TL TL C 119 O6 DG D 10 1555 1555 3.09 LINK TL TL C 120 O6 DG D 1 1555 1555 2.85 LINK TL TL C 120 O6 DG D 2 1555 1555 2.98 LINK TL TL C 120 O6 DG D 11 1555 1555 3.08 LINK TL TL C 120 O6 DG D 12 1555 1555 2.87 LINK TL TL C 122 O6 DG D 1 1555 1555 3.32 LINK TL TL C 122 O6 DG D 12 1555 1555 3.17 LINK O6 DG D 4 TL TL D 121 1555 1555 3.31 LINK O2 DT D 5 TL TL D 121 1555 1555 2.88 LINK O2 DT D 7 TL TL D 121 1555 1555 2.52 LINK O6 DG D 9 TL TL D 121 1555 1555 3.01 LINK TL TL D 121 O HOH D 122 1555 1555 3.47 SITE 1 AC1 7 DG A 1 DG A 12 TL A 116 DG B 4 SITE 2 AC1 7 DT B 5 DT B 7 DG B 9 SITE 1 AC2 10 DG A 2 DG A 3 DG A 10 DG A 11 SITE 2 AC2 10 TL A 115 TL A 116 DG B 2 DG B 3 SITE 3 AC2 10 DG B 10 DG B 11 SITE 1 AC3 10 DG A 3 DG A 4 DG A 9 DG A 10 SITE 2 AC3 10 TL A 114 TL A 117 DG B 1 DG B 2 SITE 3 AC3 10 DG B 11 DG B 12 SITE 1 AC4 10 DG A 1 DG A 2 DG A 11 DG A 12 SITE 2 AC4 10 TL A 114 DG B 3 DG B 4 DG B 9 SITE 3 AC4 10 DG B 10 TL B 113 SITE 1 AC5 8 DG A 4 DT A 5 DT A 7 DG A 9 SITE 2 AC5 8 TL A 115 HOH A 118 DG B 1 DG B 12 SITE 1 AC6 10 DG C 2 DG C 3 DG C 10 DG C 11 SITE 2 AC6 10 TL C 119 TL C 120 DG D 2 DG D 3 SITE 3 AC6 10 DG D 10 DG D 11 SITE 1 AC7 9 DG C 1 DG C 2 DG C 11 DG C 12 SITE 2 AC7 9 TL C 118 DG D 3 DG D 4 DG D 9 SITE 3 AC7 9 DG D 10 SITE 1 AC8 10 DG C 3 DG C 4 DG C 9 DG C 10 SITE 2 AC8 10 TL C 118 TL C 122 DG D 1 DG D 2 SITE 3 AC8 10 DG D 11 DG D 12 SITE 1 AC9 7 DG C 1 DG C 12 DG D 4 DT D 5 SITE 2 AC9 7 DT D 6 DT D 7 DG D 9 SITE 1 BC1 7 DG C 4 DT C 5 DT C 7 DG C 9 SITE 2 BC1 7 TL C 120 DG D 1 DG D 12 CRYST1 27.375 48.210 96.198 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.036530 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020743 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010395 0.00000