HEADER TRANSFERASE 17-JUN-06 2HCN TITLE CRYSTAL STRUCTURE OF RNA DEPENDENT RNA POLYMERASE DOMAIN FROM WEST TITLE 2 NILE VIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-DIRECTED RNA POLYMERASE (NS5); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA-DIRECTED RNA POLYMERASE DOMAIN; COMPND 5 EC: 2.7.7.48; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KUNJIN VIRUS; SOURCE 3 ORGANISM_TAXID: 11077; SOURCE 4 STRAIN: KUNJIN; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: C41PROS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDEST14 KEYWDS WEST-NILE VIRUS RNA POLYMERASE, STRUCTURAL GENOMICS, MARSEILLES KEYWDS 2 STRUCTURAL GENOMICS PROGRAM @ AFMB, MSGP, VIZIER, VIRAL ENZYMES KEYWDS 3 INVOLVED IN REPLICATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.P.EGLOFF,H.MALET,MARSEILLES STRUCTURAL GENOMICS PROGRAM @ AFMB AUTHOR 2 (MSGP) REVDAT 5 30-AUG-23 2HCN 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 2HCN 1 VERSN REVDAT 3 24-FEB-09 2HCN 1 VERSN REVDAT 2 28-AUG-07 2HCN 1 JRNL KEYWDS REVDAT 1 06-FEB-07 2HCN 0 JRNL AUTH H.MALET,M.P.EGLOFF,B.SELISKO,R.E.BUTCHER,P.J.WRIGHT, JRNL AUTH 2 M.ROBERTS,A.GRUEZ,G.SULZENBACHER,C.VONRHEIN,G.BRICOGNE, JRNL AUTH 3 J.M.MACKENZIE,A.A.KHROMYKH,A.D.DAVIDSON,B.CANARD JRNL TITL CRYSTAL STRUCTURE OF THE RNA POLYMERASE DOMAIN OF THE WEST JRNL TITL 2 NILE VIRUS NON-STRUCTURAL PROTEIN 5 JRNL REF J.BIOL.CHEM. V. 282 10678 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17287213 JRNL DOI 10.1074/JBC.M607273200 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 32583 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1734 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2385 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.2990 REMARK 3 BIN FREE R VALUE SET COUNT : 114 REMARK 3 BIN FREE R VALUE : 0.3530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3931 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 173 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 61.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.96000 REMARK 3 B22 (A**2) : -1.96000 REMARK 3 B33 (A**2) : 3.91000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.250 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.220 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.172 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.837 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4021 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5444 ; 1.729 ; 1.935 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 480 ; 7.286 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 198 ;36.388 ;22.980 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 696 ;20.655 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;19.044 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 580 ; 0.151 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3063 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1837 ; 0.216 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2659 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 227 ; 0.181 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.022 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 59 ; 0.257 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.214 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2475 ; 0.728 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3868 ; 1.255 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1832 ; 1.827 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1576 ; 2.747 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 322 A 723 REMARK 3 ORIGIN FOR THE GROUP (A): 34.8664 29.6850 36.7201 REMARK 3 T TENSOR REMARK 3 T11: -0.1883 T22: -0.1212 REMARK 3 T33: -0.1919 T12: -0.0007 REMARK 3 T13: 0.0011 T23: 0.0863 REMARK 3 L TENSOR REMARK 3 L11: 3.0179 L22: 2.6256 REMARK 3 L33: 0.8817 L12: -0.6596 REMARK 3 L13: -0.0955 L23: 0.3982 REMARK 3 S TENSOR REMARK 3 S11: -0.0357 S12: 0.2483 S13: -0.1862 REMARK 3 S21: -0.1726 S22: 0.0168 S23: 0.1848 REMARK 3 S31: 0.0014 S32: -0.0094 S33: 0.0189 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 724 A 892 REMARK 3 ORIGIN FOR THE GROUP (A): 9.3348 45.9787 33.2101 REMARK 3 T TENSOR REMARK 3 T11: -0.2139 T22: -0.1141 REMARK 3 T33: -0.0410 T12: 0.0015 REMARK 3 T13: -0.0213 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 6.0854 L22: 1.8738 REMARK 3 L33: 5.1263 L12: 0.1998 REMARK 3 L13: 3.0131 L23: -0.7581 REMARK 3 S TENSOR REMARK 3 S11: -0.3791 S12: 0.0750 S13: 0.2583 REMARK 3 S21: 0.0211 S22: 0.1232 S23: 0.0115 REMARK 3 S31: -0.1928 S32: -0.0860 S33: 0.2559 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2HCN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1000038199. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9330 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : MOSFLM REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34338 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 69.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.56000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: WEST NILE VIRUS RNA DEPENDANT RNA POLYMERASE REMARK 200 COORDINATES 2HCS (DOMAIN FROM AMINO ACIDS 317-905) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 8000, IMID 0.1M, CA(OAC)2 REMARK 280 0.2M, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K, PH 8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.28600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.42900 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 17.14300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 311 REMARK 465 HIS A 312 REMARK 465 HIS A 313 REMARK 465 HIS A 314 REMARK 465 HIS A 315 REMARK 465 HIS A 316 REMARK 465 LYS A 317 REMARK 465 SER A 318 REMARK 465 ALA A 319 REMARK 465 SER A 320 REMARK 465 SER A 321 REMARK 465 ASN A 339 REMARK 465 VAL A 340 REMARK 465 THR A 341 REMARK 465 THR A 342 REMARK 465 MET A 343 REMARK 465 ALA A 344 REMARK 465 MET A 345 REMARK 465 THR A 346 REMARK 465 ASP A 347 REMARK 465 THR A 348 REMARK 465 THR A 349 REMARK 465 PRO A 350 REMARK 465 PHE A 351 REMARK 465 GLY A 352 REMARK 465 GLN A 353 REMARK 465 GLN A 354 REMARK 465 ARG A 355 REMARK 465 VAL A 356 REMARK 465 PHE A 357 REMARK 465 LYS A 358 REMARK 465 GLU A 359 REMARK 465 LYS A 360 REMARK 465 VAL A 361 REMARK 465 ASP A 362 REMARK 465 LEU A 411 REMARK 465 GLY A 412 REMARK 465 ALA A 413 REMARK 465 MET A 414 REMARK 465 PHE A 415 REMARK 465 GLU A 416 REMARK 465 GLU A 417 REMARK 465 GLN A 418 REMARK 465 ASN A 419 REMARK 465 ILE A 453 REMARK 465 TYR A 454 REMARK 465 ASN A 455 REMARK 465 MET A 456 REMARK 465 MET A 457 REMARK 465 GLY A 458 REMARK 465 LYS A 459 REMARK 465 ARG A 460 REMARK 465 GLU A 461 REMARK 465 LYS A 462 REMARK 465 LYS A 463 REMARK 465 PRO A 464 REMARK 465 GLY A 465 REMARK 465 GLU A 466 REMARK 465 PHE A 467 REMARK 465 GLY A 468 REMARK 465 LYS A 469 REMARK 465 ALA A 470 REMARK 465 LYS A 471 REMARK 465 GLY A 472 REMARK 465 SER A 473 REMARK 465 HIS A 577 REMARK 465 LYS A 578 REMARK 465 VAL A 579 REMARK 465 VAL A 580 REMARK 465 LYS A 581 REMARK 465 VAL A 582 REMARK 465 MET A 583 REMARK 465 ARG A 584 REMARK 465 PRO A 585 REMARK 465 ALA A 586 REMARK 465 ALA A 587 REMARK 465 ASP A 588 REMARK 465 GLY A 589 REMARK 465 ARG A 590 REMARK 465 THR A 591 REMARK 465 VAL A 592 REMARK 465 MET A 593 REMARK 465 ASP A 594 REMARK 465 VAL A 595 REMARK 465 ILE A 596 REMARK 465 SER A 597 REMARK 465 ARG A 598 REMARK 465 GLU A 599 REMARK 465 ASP A 600 REMARK 465 GLN A 601 REMARK 465 ARG A 602 REMARK 465 GLY A 603 REMARK 465 GLY A 748 REMARK 465 ALA A 749 REMARK 465 GLY A 750 REMARK 465 TRP A 751 REMARK 465 ARG A 893 REMARK 465 TYR A 894 REMARK 465 GLU A 895 REMARK 465 ASP A 896 REMARK 465 THR A 897 REMARK 465 THR A 898 REMARK 465 LEU A 899 REMARK 465 VAL A 900 REMARK 465 GLU A 901 REMARK 465 ASP A 902 REMARK 465 THR A 903 REMARK 465 VAL A 904 REMARK 465 LEU A 905 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 892 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 562 O HOH A 1041 2.17 REMARK 500 NH1 ARG A 441 OE1 GLU A 489 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 325 C VAL A 326 N 0.193 REMARK 500 VAL A 326 CB VAL A 326 CG1 0.148 REMARK 500 VAL A 326 CB VAL A 326 CG2 0.141 REMARK 500 LEU A 329 CG LEU A 329 CD1 0.373 REMARK 500 LEU A 329 CG LEU A 329 CD2 0.256 REMARK 500 LYS A 332 CD LYS A 332 CE 0.364 REMARK 500 LYS A 332 CE LYS A 332 NZ 0.568 REMARK 500 LYS A 432 CG LYS A 432 CD 0.238 REMARK 500 LYS A 432 CD LYS A 432 CE 0.323 REMARK 500 LYS A 432 CE LYS A 432 NZ 0.185 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 332 CD - CE - NZ ANGL. DEV. = -21.6 DEGREES REMARK 500 ARG A 502 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 502 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 VAL A 555 CB - CA - C ANGL. DEV. = -12.0 DEGREES REMARK 500 ARG A 659 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 659 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 859 NH1 - CZ - NH2 ANGL. DEV. = 6.9 DEGREES REMARK 500 ARG A 859 NE - CZ - NH2 ANGL. DEV. = -6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 326 -63.97 -90.07 REMARK 500 THR A 336 30.05 -91.94 REMARK 500 LYS A 364 -109.41 -134.00 REMARK 500 ALA A 365 90.85 -4.14 REMARK 500 THR A 451 -166.20 -79.39 REMARK 500 VAL A 509 26.30 -142.60 REMARK 500 GLU A 572 23.30 -78.37 REMARK 500 LYS A 691 55.03 -91.26 REMARK 500 SER A 801 -5.37 74.65 REMARK 500 ILE A 823 -69.67 -128.87 REMARK 500 SER A 844 163.00 -48.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 755 THR A 756 49.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 VAL A 327 -10.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 1 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 536 OD1 REMARK 620 2 ASP A 669 OD1 98.1 REMARK 620 3 HOH A 985 O 149.4 73.9 REMARK 620 4 HOH A 986 O 99.5 161.3 87.7 REMARK 620 5 HOH A 987 O 79.6 88.2 70.8 89.0 REMARK 620 6 HOH A 999 O 138.6 70.9 67.7 99.3 137.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 2 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 440 OE2 REMARK 620 2 HIS A 444 ND1 92.0 REMARK 620 3 CYS A 449 SG 94.9 107.5 REMARK 620 4 CYS A 452 SG 115.7 140.8 97.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 3 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 717 NE2 REMARK 620 2 CYS A 733 SG 110.8 REMARK 620 3 CYS A 852 SG 104.8 121.5 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 3 DBREF 2HCN A 318 905 UNP P14335 POLG_KUNJM 2846 3433 SEQADV 2HCN HIS A 311 UNP P14335 EXPRESSION TAG SEQADV 2HCN HIS A 312 UNP P14335 EXPRESSION TAG SEQADV 2HCN HIS A 313 UNP P14335 EXPRESSION TAG SEQADV 2HCN HIS A 314 UNP P14335 EXPRESSION TAG SEQADV 2HCN HIS A 315 UNP P14335 EXPRESSION TAG SEQADV 2HCN HIS A 316 UNP P14335 EXPRESSION TAG SEQADV 2HCN LYS A 317 UNP P14335 SEE REMARK 999 SEQRES 1 A 595 HIS HIS HIS HIS HIS HIS LYS SER ALA SER SER LEU VAL SEQRES 2 A 595 ASN GLY VAL VAL ARG LEU LEU SER LYS PRO TRP ASP THR SEQRES 3 A 595 ILE THR ASN VAL THR THR MET ALA MET THR ASP THR THR SEQRES 4 A 595 PRO PHE GLY GLN GLN ARG VAL PHE LYS GLU LYS VAL ASP SEQRES 5 A 595 THR LYS ALA PRO GLU PRO PRO GLU GLY VAL LYS TYR VAL SEQRES 6 A 595 LEU ASN GLU THR THR ASN TRP LEU TRP ALA PHE LEU ALA SEQRES 7 A 595 ARG GLU LYS ARG PRO ARG MET CYS SER ARG GLU GLU PHE SEQRES 8 A 595 ILE ARG LYS VAL ASN SER ASN ALA ALA LEU GLY ALA MET SEQRES 9 A 595 PHE GLU GLU GLN ASN GLN TRP ARG SER ALA ARG GLU ALA SEQRES 10 A 595 VAL GLU ASP PRO LYS PHE TRP GLU MET VAL ASP GLU GLU SEQRES 11 A 595 ARG GLU ALA HIS LEU ARG GLY GLU CYS HIS THR CYS ILE SEQRES 12 A 595 TYR ASN MET MET GLY LYS ARG GLU LYS LYS PRO GLY GLU SEQRES 13 A 595 PHE GLY LYS ALA LYS GLY SER ARG ALA ILE TRP PHE MET SEQRES 14 A 595 TRP LEU GLY ALA ARG PHE LEU GLU PHE GLU ALA LEU GLY SEQRES 15 A 595 PHE LEU ASN GLU ASP HIS TRP LEU GLY ARG LYS ASN SER SEQRES 16 A 595 GLY GLY GLY VAL GLU GLY LEU GLY LEU GLN LYS LEU GLY SEQRES 17 A 595 TYR ILE LEU ARG GLU VAL GLY THR ARG PRO GLY GLY ARG SEQRES 18 A 595 ILE TYR ALA ASP ASP THR ALA GLY TRP ASP THR ARG ILE SEQRES 19 A 595 THR ARG ALA ASP LEU GLU ASN GLU ALA LYS VAL LEU GLU SEQRES 20 A 595 LEU LEU ASP GLY GLU HIS ARG ARG LEU ALA ARG ALA ILE SEQRES 21 A 595 ILE GLU LEU THR TYR ARG HIS LYS VAL VAL LYS VAL MET SEQRES 22 A 595 ARG PRO ALA ALA ASP GLY ARG THR VAL MET ASP VAL ILE SEQRES 23 A 595 SER ARG GLU ASP GLN ARG GLY SER GLY GLN VAL VAL THR SEQRES 24 A 595 TYR ALA LEU ASN THR PHE THR ASN LEU ALA VAL GLN LEU SEQRES 25 A 595 VAL ARG MET MET GLU GLY GLU GLY VAL ILE GLY PRO ASP SEQRES 26 A 595 ASP VAL GLU LYS LEU THR LYS GLY LYS GLY PRO LYS VAL SEQRES 27 A 595 ARG THR TRP LEU SER GLU ASN GLY GLU GLU ARG LEU SER SEQRES 28 A 595 ARG MET ALA VAL SER GLY ASP ASP CYS VAL VAL LYS PRO SEQRES 29 A 595 LEU ASP ASP ARG PHE ALA THR SER LEU HIS PHE LEU ASN SEQRES 30 A 595 ALA MET SER LYS VAL ARG LYS ASP ILE GLN GLU TRP LYS SEQRES 31 A 595 PRO SER THR GLY TRP TYR ASP TRP GLN GLN VAL PRO PHE SEQRES 32 A 595 CYS SER ASN HIS PHE THR GLU LEU ILE MET LYS ASP GLY SEQRES 33 A 595 ARG THR LEU VAL THR PRO CYS ARG GLY GLN ASP GLU LEU SEQRES 34 A 595 VAL GLY ARG ALA ARG ILE SER PRO GLY ALA GLY TRP ASN SEQRES 35 A 595 VAL ARG ASP THR ALA CYS LEU ALA LYS SER TYR ALA GLN SEQRES 36 A 595 MET TRP LEU LEU LEU TYR PHE HIS ARG ARG ASP LEU ARG SEQRES 37 A 595 LEU MET ALA ASN ALA ILE CYS SER ALA VAL PRO VAL ASN SEQRES 38 A 595 TRP VAL PRO THR GLY ARG THR THR TRP SER ILE HIS ALA SEQRES 39 A 595 GLY GLY GLU TRP MET THR THR GLU ASP MET LEU GLU VAL SEQRES 40 A 595 TRP ASN ARG VAL TRP ILE GLU GLU ASN GLU TRP MET GLU SEQRES 41 A 595 ASP LYS THR PRO VAL GLU LYS TRP SER ASP VAL PRO TYR SEQRES 42 A 595 SER GLY LYS ARG GLU ASP ILE TRP CYS GLY SER LEU ILE SEQRES 43 A 595 GLY THR ARG ALA ARG ALA THR TRP ALA GLU ASN ILE GLN SEQRES 44 A 595 VAL ALA ILE ASN GLN VAL ARG SER ILE ILE GLY ASP GLU SEQRES 45 A 595 LYS TYR VAL ASP TYR MET SER SER LEU LYS ARG TYR GLU SEQRES 46 A 595 ASP THR THR LEU VAL GLU ASP THR VAL LEU HET CA A 1 1 HET ZN A 2 1 HET ZN A 3 1 HETNAM CA CALCIUM ION HETNAM ZN ZINC ION FORMUL 2 CA CA 2+ FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HOH *173(H2 O) HELIX 1 1 ASN A 324 LEU A 330 1 7 HELIX 2 2 SER A 331 ASP A 335 5 5 HELIX 3 3 PRO A 369 ALA A 388 1 20 HELIX 4 4 SER A 397 SER A 407 1 11 HELIX 5 5 ARG A 422 ASP A 430 1 9 HELIX 6 6 ASP A 430 GLY A 447 1 18 HELIX 7 7 ALA A 475 GLY A 492 1 18 HELIX 8 8 GLY A 492 ASP A 497 1 6 HELIX 9 9 GLY A 501 GLY A 506 1 6 HELIX 10 10 GLY A 513 GLY A 525 1 13 HELIX 11 11 GLY A 539 ARG A 543 5 5 HELIX 12 12 THR A 545 ALA A 553 1 9 HELIX 13 13 LYS A 554 LEU A 559 5 6 HELIX 14 14 ASP A 560 GLU A 572 1 13 HELIX 15 15 GLY A 605 GLU A 629 1 25 HELIX 16 16 GLY A 643 SER A 661 1 19 HELIX 17 17 ASP A 676 SER A 682 5 7 HELIX 18 18 LEU A 683 MET A 689 1 7 HELIX 19 19 GLY A 735 ARG A 744 1 10 HELIX 20 20 VAL A 753 TYR A 771 1 19 HELIX 21 21 ARG A 774 VAL A 788 1 15 HELIX 22 22 ASP A 813 ILE A 823 1 11 HELIX 23 23 LYS A 837 VAL A 841 5 5 HELIX 24 24 GLY A 845 CYS A 852 1 8 HELIX 25 25 THR A 858 ASN A 867 1 10 HELIX 26 26 ASN A 867 GLY A 880 1 14 HELIX 27 27 TYR A 887 LEU A 891 5 5 SHEET 1 A 2 MET A 663 SER A 666 0 SHEET 2 A 2 ASP A 669 VAL A 672 -1 O ASP A 669 N SER A 666 SHEET 1 B 2 HIS A 717 ILE A 722 0 SHEET 2 B 2 THR A 728 CYS A 733 -1 O LEU A 729 N LEU A 721 LINK CA CA A 1 OD1 ASP A 536 1555 1555 2.51 LINK CA CA A 1 OD1 ASP A 669 1555 1555 2.39 LINK CA CA A 1 O HOH A 985 1555 1555 2.47 LINK CA CA A 1 O HOH A 986 1555 1555 2.40 LINK CA CA A 1 O HOH A 987 1555 1555 2.41 LINK CA CA A 1 O HOH A 999 1555 1555 2.48 LINK ZN ZN A 2 OE2 GLU A 440 1555 1555 2.24 LINK ZN ZN A 2 ND1 HIS A 444 1555 1555 2.70 LINK ZN ZN A 2 SG CYS A 449 1555 1555 2.51 LINK ZN ZN A 2 SG CYS A 452 1555 1555 2.50 LINK ZN ZN A 3 NE2 HIS A 717 1555 1555 2.18 LINK ZN ZN A 3 SG CYS A 733 1555 1555 2.49 LINK ZN ZN A 3 SG CYS A 852 1555 1555 2.25 CISPEP 1 SER A 604 GLY A 605 0 28.63 SITE 1 AC1 6 ASP A 536 ASP A 669 HOH A 985 HOH A 986 SITE 2 AC1 6 HOH A 987 HOH A 999 SITE 1 AC2 4 GLU A 440 HIS A 444 CYS A 449 CYS A 452 SITE 1 AC3 3 HIS A 717 CYS A 733 CYS A 852 CRYST1 110.064 110.064 68.572 90.00 90.00 90.00 P 43 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009086 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009086 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014583 0.00000