data_2HDD # _entry.id 2HDD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2HDD pdb_00002hdd 10.2210/pdb2hdd/pdb RCSB PDT043 ? ? WWPDB D_1000178177 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-05-27 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-11-03 5 'Structure model' 1 4 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' struct_ref_seq_dif 3 5 'Structure model' chem_comp_atom 4 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2HDD _pdbx_database_status.recvd_initial_deposition_date 1998-02-10 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tucker-Kellogg, L.' 1 'Rould, M.A.' 2 'Chambers, K.A.' 3 'Ades, S.E.' 4 'Sauer, R.T.' 5 'Pabo, C.O.' 6 # _citation.id primary _citation.title ;Engrailed (Gln50-->Lys) homeodomain-DNA complex at 1.9 A resolution: structural basis for enhanced affinity and altered specificity. ; _citation.journal_abbrev Structure _citation.journal_volume 5 _citation.page_first 1047 _citation.page_last 1054 _citation.year 1997 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9309220 _citation.pdbx_database_id_DOI '10.1016/S0969-2126(97)00256-6' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tucker-Kellogg, L.' 1 ? primary 'Rould, M.A.' 2 ? primary 'Chambers, K.A.' 3 ? primary 'Ades, S.E.' 4 ? primary 'Sauer, R.T.' 5 ? primary 'Pabo, C.O.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*TP*TP*TP*GP*CP*CP*AP*TP*GP*TP*AP*AP*TP*CP*CP*C P*CP*GP*GP*A)-3') ; 6389.133 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*AP*TP*CP*CP*GP*GP*GP*GP*AP*TP*TP*AP*CP*AP*TP*GP*G P*CP*AP*AP*A)-3') ; 6496.224 1 ? ? ? ? 3 polymer man 'PROTEIN (ENGRAILED HOMEODOMAIN Q50K)' 7426.592 2 ? Q50K ? ? 4 water nat water 18.015 183 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no ;(DT)(DT)(DT)(DT)(DG)(DC)(DC)(DA)(DT)(DG)(DT)(DA)(DA)(DT)(DC)(DC)(DC)(DC)(DG)(DG) (DA) ; TTTTGCCATGTAATCCCCGGA C ? 2 polydeoxyribonucleotide no no ;(DA)(DT)(DC)(DC)(DG)(DG)(DG)(DG)(DA)(DT)(DT)(DA)(DC)(DA)(DT)(DG)(DG)(DC)(DA)(DA) (DA) ; ATCCGGGGATTACATGGCAAA D ? 3 'polypeptide(L)' no no MAEKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKKS MAEKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKKS A,B ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DT n 1 3 DT n 1 4 DT n 1 5 DG n 1 6 DC n 1 7 DC n 1 8 DA n 1 9 DT n 1 10 DG n 1 11 DT n 1 12 DA n 1 13 DA n 1 14 DT n 1 15 DC n 1 16 DC n 1 17 DC n 1 18 DC n 1 19 DG n 1 20 DG n 1 21 DA n 2 1 DA n 2 2 DT n 2 3 DC n 2 4 DC n 2 5 DG n 2 6 DG n 2 7 DG n 2 8 DG n 2 9 DA n 2 10 DT n 2 11 DT n 2 12 DA n 2 13 DC n 2 14 DA n 2 15 DT n 2 16 DG n 2 17 DG n 2 18 DC n 2 19 DA n 2 20 DA n 2 21 DA n 3 1 MET n 3 2 ALA n 3 3 GLU n 3 4 LYS n 3 5 ARG n 3 6 PRO n 3 7 ARG n 3 8 THR n 3 9 ALA n 3 10 PHE n 3 11 SER n 3 12 SER n 3 13 GLU n 3 14 GLN n 3 15 LEU n 3 16 ALA n 3 17 ARG n 3 18 LEU n 3 19 LYS n 3 20 ARG n 3 21 GLU n 3 22 PHE n 3 23 ASN n 3 24 GLU n 3 25 ASN n 3 26 ARG n 3 27 TYR n 3 28 LEU n 3 29 THR n 3 30 GLU n 3 31 ARG n 3 32 ARG n 3 33 ARG n 3 34 GLN n 3 35 GLN n 3 36 LEU n 3 37 SER n 3 38 SER n 3 39 GLU n 3 40 LEU n 3 41 GLY n 3 42 LEU n 3 43 ASN n 3 44 GLU n 3 45 ALA n 3 46 GLN n 3 47 ILE n 3 48 LYS n 3 49 ILE n 3 50 TRP n 3 51 PHE n 3 52 LYS n 3 53 ASN n 3 54 LYS n 3 55 ARG n 3 56 ALA n 3 57 LYS n 3 58 ILE n 3 59 LYS n 3 60 LYS n 3 61 SER n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'fruit fly' _entity_src_gen.gene_src_genus Drosophila _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Drosophila melanogaster' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 7227 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT T C . n A 1 2 DT 2 2 2 DT T C . n A 1 3 DT 3 3 3 DT T C . n A 1 4 DT 4 4 4 DT T C . n A 1 5 DG 5 5 5 DG G C . n A 1 6 DC 6 6 6 DC C C . n A 1 7 DC 7 7 7 DC C C . n A 1 8 DA 8 8 8 DA A C . n A 1 9 DT 9 9 9 DT T C . n A 1 10 DG 10 10 10 DG G C . n A 1 11 DT 11 11 11 DT T C . n A 1 12 DA 12 12 12 DA A C . n A 1 13 DA 13 13 13 DA A C . n A 1 14 DT 14 14 14 DT T C . n A 1 15 DC 15 15 15 DC C C . n A 1 16 DC 16 16 16 DC C C . n A 1 17 DC 17 17 17 DC C C . n A 1 18 DC 18 18 18 DC C C . n A 1 19 DG 19 19 19 DG G C . n A 1 20 DG 20 20 20 DG G C . n A 1 21 DA 21 21 21 DA A C . n B 2 1 DA 1 22 22 DA A D . n B 2 2 DT 2 23 23 DT T D . n B 2 3 DC 3 24 24 DC C D . n B 2 4 DC 4 25 25 DC C D . n B 2 5 DG 5 26 26 DG G D . n B 2 6 DG 6 27 27 DG G D . n B 2 7 DG 7 28 28 DG G D . n B 2 8 DG 8 29 29 DG G D . n B 2 9 DA 9 30 30 DA A D . n B 2 10 DT 10 31 31 DT T D . n B 2 11 DT 11 32 32 DT T D . n B 2 12 DA 12 33 33 DA A D . n B 2 13 DC 13 34 34 DC C D . n B 2 14 DA 14 35 35 DA A D . n B 2 15 DT 15 36 36 DT T D . n B 2 16 DG 16 37 37 DG G D . n B 2 17 DG 17 38 38 DG G D . n B 2 18 DC 18 39 39 DC C D . n B 2 19 DA 19 40 40 DA A D . n B 2 20 DA 20 41 41 DA A D . n B 2 21 DA 21 42 42 DA A D . n C 3 1 MET 1 -1 ? ? ? A . n C 3 2 ALA 2 0 ? ? ? A . n C 3 3 GLU 3 1 ? ? ? A . n C 3 4 LYS 4 2 ? ? ? A . n C 3 5 ARG 5 3 ? ? ? A . n C 3 6 PRO 6 4 ? ? ? A . n C 3 7 ARG 7 5 5 ARG ARG A . n C 3 8 THR 8 6 6 THR THR A . n C 3 9 ALA 9 7 7 ALA ALA A . n C 3 10 PHE 10 8 8 PHE PHE A . n C 3 11 SER 11 9 9 SER SER A . n C 3 12 SER 12 10 10 SER SER A . n C 3 13 GLU 13 11 11 GLU GLU A . n C 3 14 GLN 14 12 12 GLN GLN A . n C 3 15 LEU 15 13 13 LEU LEU A . n C 3 16 ALA 16 14 14 ALA ALA A . n C 3 17 ARG 17 15 15 ARG ARG A . n C 3 18 LEU 18 16 16 LEU LEU A . n C 3 19 LYS 19 17 17 LYS LYS A . n C 3 20 ARG 20 18 18 ARG ARG A . n C 3 21 GLU 21 19 19 GLU GLU A . n C 3 22 PHE 22 20 20 PHE PHE A . n C 3 23 ASN 23 21 21 ASN ASN A . n C 3 24 GLU 24 22 22 GLU GLU A . n C 3 25 ASN 25 23 23 ASN ASN A . n C 3 26 ARG 26 24 24 ARG ARG A . n C 3 27 TYR 27 25 25 TYR TYR A . n C 3 28 LEU 28 26 26 LEU LEU A . n C 3 29 THR 29 27 27 THR THR A . n C 3 30 GLU 30 28 28 GLU GLU A . n C 3 31 ARG 31 29 29 ARG ARG A . n C 3 32 ARG 32 30 30 ARG ARG A . n C 3 33 ARG 33 31 31 ARG ARG A . n C 3 34 GLN 34 32 32 GLN GLN A . n C 3 35 GLN 35 33 33 GLN GLN A . n C 3 36 LEU 36 34 34 LEU LEU A . n C 3 37 SER 37 35 35 SER SER A . n C 3 38 SER 38 36 36 SER SER A . n C 3 39 GLU 39 37 37 GLU GLU A . n C 3 40 LEU 40 38 38 LEU LEU A . n C 3 41 GLY 41 39 39 GLY GLY A . n C 3 42 LEU 42 40 40 LEU LEU A . n C 3 43 ASN 43 41 41 ASN ASN A . n C 3 44 GLU 44 42 42 GLU GLU A . n C 3 45 ALA 45 43 43 ALA ALA A . n C 3 46 GLN 46 44 44 GLN GLN A . n C 3 47 ILE 47 45 45 ILE ILE A . n C 3 48 LYS 48 46 46 LYS LYS A . n C 3 49 ILE 49 47 47 ILE ILE A . n C 3 50 TRP 50 48 48 TRP TRP A . n C 3 51 PHE 51 49 49 PHE PHE A . n C 3 52 LYS 52 50 50 LYS LYS A . n C 3 53 ASN 53 51 51 ASN ASN A . n C 3 54 LYS 54 52 52 LYS LYS A . n C 3 55 ARG 55 53 53 ARG ARG A . n C 3 56 ALA 56 54 54 ALA ALA A . n C 3 57 LYS 57 55 55 LYS LYS A . n C 3 58 ILE 58 56 56 ILE ILE A . n C 3 59 LYS 59 57 57 LYS LYS A . n C 3 60 LYS 60 58 58 LYS LYS A . n C 3 61 SER 61 59 59 SER SER A . n D 3 1 MET 1 -1 ? ? ? B . n D 3 2 ALA 2 0 ? ? ? B . n D 3 3 GLU 3 1 ? ? ? B . n D 3 4 LYS 4 2 2 LYS LYS B . n D 3 5 ARG 5 3 3 ARG ARG B . n D 3 6 PRO 6 4 4 PRO PRO B . n D 3 7 ARG 7 5 5 ARG ARG B . n D 3 8 THR 8 6 6 THR THR B . n D 3 9 ALA 9 7 7 ALA ALA B . n D 3 10 PHE 10 8 8 PHE PHE B . n D 3 11 SER 11 9 9 SER SER B . n D 3 12 SER 12 10 10 SER SER B . n D 3 13 GLU 13 11 11 GLU GLU B . n D 3 14 GLN 14 12 12 GLN GLN B . n D 3 15 LEU 15 13 13 LEU LEU B . n D 3 16 ALA 16 14 14 ALA ALA B . n D 3 17 ARG 17 15 15 ARG ARG B . n D 3 18 LEU 18 16 16 LEU LEU B . n D 3 19 LYS 19 17 17 LYS LYS B . n D 3 20 ARG 20 18 18 ARG ARG B . n D 3 21 GLU 21 19 19 GLU GLU B . n D 3 22 PHE 22 20 20 PHE PHE B . n D 3 23 ASN 23 21 21 ASN ASN B . n D 3 24 GLU 24 22 22 GLU GLU B . n D 3 25 ASN 25 23 23 ASN ASN B . n D 3 26 ARG 26 24 24 ARG ARG B . n D 3 27 TYR 27 25 25 TYR TYR B . n D 3 28 LEU 28 26 26 LEU LEU B . n D 3 29 THR 29 27 27 THR THR B . n D 3 30 GLU 30 28 28 GLU GLU B . n D 3 31 ARG 31 29 29 ARG ARG B . n D 3 32 ARG 32 30 30 ARG ARG B . n D 3 33 ARG 33 31 31 ARG ARG B . n D 3 34 GLN 34 32 32 GLN GLN B . n D 3 35 GLN 35 33 33 GLN GLN B . n D 3 36 LEU 36 34 34 LEU LEU B . n D 3 37 SER 37 35 35 SER SER B . n D 3 38 SER 38 36 36 SER SER B . n D 3 39 GLU 39 37 37 GLU GLU B . n D 3 40 LEU 40 38 38 LEU LEU B . n D 3 41 GLY 41 39 39 GLY GLY B . n D 3 42 LEU 42 40 40 LEU LEU B . n D 3 43 ASN 43 41 41 ASN ASN B . n D 3 44 GLU 44 42 42 GLU GLU B . n D 3 45 ALA 45 43 43 ALA ALA B . n D 3 46 GLN 46 44 44 GLN GLN B . n D 3 47 ILE 47 45 45 ILE ILE B . n D 3 48 LYS 48 46 46 LYS LYS B . n D 3 49 ILE 49 47 47 ILE ILE B . n D 3 50 TRP 50 48 48 TRP TRP B . n D 3 51 PHE 51 49 49 PHE PHE B . n D 3 52 LYS 52 50 50 LYS LYS B . n D 3 53 ASN 53 51 51 ASN ASN B . n D 3 54 LYS 54 52 52 LYS LYS B . n D 3 55 ARG 55 53 53 ARG ARG B . n D 3 56 ALA 56 54 54 ALA ALA B . n D 3 57 LYS 57 55 55 LYS LYS B . n D 3 58 ILE 58 56 56 ILE ILE B . n D 3 59 LYS 59 57 57 LYS LYS B . n D 3 60 LYS 60 58 ? ? ? B . n D 3 61 SER 61 59 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 HOH 1 22 16 HOH HOH C . E 4 HOH 2 23 19 HOH HOH C . E 4 HOH 3 24 20 HOH HOH C . E 4 HOH 4 25 25 HOH HOH C . E 4 HOH 5 26 27 HOH HOH C . E 4 HOH 6 27 28 HOH HOH C . E 4 HOH 7 28 39 HOH HOH C . E 4 HOH 8 29 43 HOH HOH C . E 4 HOH 9 30 44 HOH HOH C . E 4 HOH 10 31 45 HOH HOH C . E 4 HOH 11 32 47 HOH HOH C . E 4 HOH 12 33 48 HOH HOH C . E 4 HOH 13 34 50 HOH HOH C . E 4 HOH 14 35 55 HOH HOH C . E 4 HOH 15 36 58 HOH HOH C . E 4 HOH 16 37 59 HOH HOH C . E 4 HOH 17 38 72 HOH HOH C . E 4 HOH 18 39 73 HOH HOH C . E 4 HOH 19 40 82 HOH HOH C . E 4 HOH 20 41 83 HOH HOH C . E 4 HOH 21 42 98 HOH HOH C . E 4 HOH 22 43 107 HOH HOH C . E 4 HOH 23 44 118 HOH HOH C . E 4 HOH 24 45 123 HOH HOH C . E 4 HOH 25 46 128 HOH HOH C . E 4 HOH 26 47 129 HOH HOH C . E 4 HOH 27 48 136 HOH HOH C . E 4 HOH 28 49 137 HOH HOH C . E 4 HOH 29 50 138 HOH HOH C . E 4 HOH 30 51 139 HOH HOH C . E 4 HOH 31 52 140 HOH HOH C . E 4 HOH 32 53 144 HOH HOH C . E 4 HOH 33 54 145 HOH HOH C . E 4 HOH 34 55 146 HOH HOH C . E 4 HOH 35 56 148 HOH HOH C . E 4 HOH 36 57 154 HOH HOH C . E 4 HOH 37 58 155 HOH HOH C . E 4 HOH 38 59 157 HOH HOH C . E 4 HOH 39 60 159 HOH HOH C . E 4 HOH 40 61 160 HOH HOH C . E 4 HOH 41 62 162 HOH HOH C . E 4 HOH 42 63 165 HOH HOH C . E 4 HOH 43 64 167 HOH HOH C . E 4 HOH 44 65 170 HOH HOH C . E 4 HOH 45 66 171 HOH HOH C . E 4 HOH 46 67 173 HOH HOH C . E 4 HOH 47 68 175 HOH HOH C . E 4 HOH 48 69 176 HOH HOH C . E 4 HOH 49 70 178 HOH HOH C . E 4 HOH 50 71 180 HOH HOH C . E 4 HOH 51 72 182 HOH HOH C . F 4 HOH 1 43 29 HOH HOH D . F 4 HOH 2 44 31 HOH HOH D . F 4 HOH 3 45 42 HOH HOH D . F 4 HOH 4 46 46 HOH HOH D . F 4 HOH 5 47 51 HOH HOH D . F 4 HOH 6 48 52 HOH HOH D . F 4 HOH 7 49 53 HOH HOH D . F 4 HOH 8 50 56 HOH HOH D . F 4 HOH 9 51 60 HOH HOH D . F 4 HOH 10 52 64 HOH HOH D . F 4 HOH 11 53 65 HOH HOH D . F 4 HOH 12 54 66 HOH HOH D . F 4 HOH 13 55 67 HOH HOH D . F 4 HOH 14 56 71 HOH HOH D . F 4 HOH 15 57 74 HOH HOH D . F 4 HOH 16 58 75 HOH HOH D . F 4 HOH 17 59 78 HOH HOH D . F 4 HOH 18 60 80 HOH HOH D . F 4 HOH 19 61 81 HOH HOH D . F 4 HOH 20 62 85 HOH HOH D . F 4 HOH 21 63 90 HOH HOH D . F 4 HOH 22 64 91 HOH HOH D . F 4 HOH 23 65 92 HOH HOH D . F 4 HOH 24 66 93 HOH HOH D . F 4 HOH 25 67 94 HOH HOH D . F 4 HOH 26 68 97 HOH HOH D . F 4 HOH 27 69 100 HOH HOH D . F 4 HOH 28 70 103 HOH HOH D . F 4 HOH 29 71 106 HOH HOH D . F 4 HOH 30 72 109 HOH HOH D . F 4 HOH 31 73 114 HOH HOH D . F 4 HOH 32 74 115 HOH HOH D . F 4 HOH 33 75 116 HOH HOH D . F 4 HOH 34 76 117 HOH HOH D . F 4 HOH 35 77 125 HOH HOH D . F 4 HOH 36 78 132 HOH HOH D . F 4 HOH 37 79 141 HOH HOH D . F 4 HOH 38 80 147 HOH HOH D . F 4 HOH 39 81 150 HOH HOH D . F 4 HOH 40 82 152 HOH HOH D . F 4 HOH 41 83 156 HOH HOH D . F 4 HOH 42 84 158 HOH HOH D . F 4 HOH 43 85 163 HOH HOH D . F 4 HOH 44 86 164 HOH HOH D . F 4 HOH 45 87 166 HOH HOH D . F 4 HOH 46 88 169 HOH HOH D . F 4 HOH 47 89 174 HOH HOH D . F 4 HOH 48 90 177 HOH HOH D . G 4 HOH 1 62 62 HOH HOH A . G 4 HOH 2 63 63 HOH HOH A . G 4 HOH 3 68 68 HOH HOH A . G 4 HOH 4 76 76 HOH HOH A . G 4 HOH 5 79 79 HOH HOH A . G 4 HOH 6 84 84 HOH HOH A . G 4 HOH 7 86 86 HOH HOH A . G 4 HOH 8 87 87 HOH HOH A . G 4 HOH 9 88 88 HOH HOH A . G 4 HOH 10 95 95 HOH HOH A . G 4 HOH 11 99 99 HOH HOH A . G 4 HOH 12 101 101 HOH HOH A . G 4 HOH 13 102 102 HOH HOH A . G 4 HOH 14 104 104 HOH HOH A . G 4 HOH 15 105 105 HOH HOH A . G 4 HOH 16 108 108 HOH HOH A . G 4 HOH 17 110 110 HOH HOH A . G 4 HOH 18 111 111 HOH HOH A . G 4 HOH 19 112 112 HOH HOH A . G 4 HOH 20 113 113 HOH HOH A . G 4 HOH 21 119 119 HOH HOH A . G 4 HOH 22 120 120 HOH HOH A . G 4 HOH 23 121 121 HOH HOH A . G 4 HOH 24 122 122 HOH HOH A . G 4 HOH 25 124 124 HOH HOH A . G 4 HOH 26 126 126 HOH HOH A . G 4 HOH 27 127 127 HOH HOH A . G 4 HOH 28 130 130 HOH HOH A . G 4 HOH 29 131 131 HOH HOH A . G 4 HOH 30 133 133 HOH HOH A . G 4 HOH 31 134 134 HOH HOH A . G 4 HOH 32 135 135 HOH HOH A . G 4 HOH 33 142 142 HOH HOH A . G 4 HOH 34 143 143 HOH HOH A . G 4 HOH 35 149 149 HOH HOH A . G 4 HOH 36 151 151 HOH HOH A . G 4 HOH 37 153 153 HOH HOH A . G 4 HOH 38 179 179 HOH HOH A . G 4 HOH 39 184 184 HOH HOH A . H 4 HOH 1 60 1 HOH HOH B . H 4 HOH 2 61 2 HOH HOH B . H 4 HOH 3 62 3 HOH HOH B . H 4 HOH 4 63 4 HOH HOH B . H 4 HOH 5 64 5 HOH HOH B . H 4 HOH 6 65 6 HOH HOH B . H 4 HOH 7 66 7 HOH HOH B . H 4 HOH 8 67 8 HOH HOH B . H 4 HOH 9 68 9 HOH HOH B . H 4 HOH 10 69 10 HOH HOH B . H 4 HOH 11 70 11 HOH HOH B . H 4 HOH 12 71 12 HOH HOH B . H 4 HOH 13 72 13 HOH HOH B . H 4 HOH 14 73 14 HOH HOH B . H 4 HOH 15 74 15 HOH HOH B . H 4 HOH 16 75 17 HOH HOH B . H 4 HOH 17 76 18 HOH HOH B . H 4 HOH 18 77 21 HOH HOH B . H 4 HOH 19 78 22 HOH HOH B . H 4 HOH 20 79 23 HOH HOH B . H 4 HOH 21 80 24 HOH HOH B . H 4 HOH 22 81 26 HOH HOH B . H 4 HOH 23 82 30 HOH HOH B . H 4 HOH 24 83 32 HOH HOH B . H 4 HOH 25 84 33 HOH HOH B . H 4 HOH 26 85 34 HOH HOH B . H 4 HOH 27 86 35 HOH HOH B . H 4 HOH 28 87 36 HOH HOH B . H 4 HOH 29 88 37 HOH HOH B . H 4 HOH 30 89 38 HOH HOH B . H 4 HOH 31 90 40 HOH HOH B . H 4 HOH 32 91 41 HOH HOH B . H 4 HOH 33 92 49 HOH HOH B . H 4 HOH 34 93 54 HOH HOH B . H 4 HOH 35 94 57 HOH HOH B . H 4 HOH 36 95 61 HOH HOH B . H 4 HOH 37 96 69 HOH HOH B . H 4 HOH 38 97 70 HOH HOH B . H 4 HOH 39 98 77 HOH HOH B . H 4 HOH 40 99 89 HOH HOH B . H 4 HOH 41 100 96 HOH HOH B . H 4 HOH 42 101 168 HOH HOH B . H 4 HOH 43 102 172 HOH HOH B . H 4 HOH 44 103 181 HOH HOH B . H 4 HOH 45 104 183 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B LYS 2 ? CG ? D LYS 4 CG 2 1 Y 1 B LYS 2 ? CD ? D LYS 4 CD 3 1 Y 1 B LYS 2 ? CE ? D LYS 4 CE 4 1 Y 1 B LYS 2 ? NZ ? D LYS 4 NZ 5 1 Y 1 B GLU 28 ? CG ? D GLU 30 CG 6 1 Y 1 B GLU 28 ? CD ? D GLU 30 CD 7 1 Y 1 B GLU 28 ? OE1 ? D GLU 30 OE1 8 1 Y 1 B GLU 28 ? OE2 ? D GLU 30 OE2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR refinement 3.1 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 # _cell.entry_id 2HDD _cell.length_a 127.720 _cell.length_b 45.340 _cell.length_c 72.470 _cell.angle_alpha 90.00 _cell.angle_beta 119.53 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2HDD _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # _exptl.entry_id 2HDD _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.23 _exptl_crystal.density_percent_sol 48.0000 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_details ;COMPLEX WAS CRYSTALLIZED BY HANGING DROP VAPOR DIFFUSION OVER .75M AMOAC AND 1% PEG400; DROP STARTS AT 1M AMOAC., pH 7.00, vapor diffusion - hanging drop ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 'AMMONIUM ACETATE' ? ? ? 1 3 1 'PEG 400' ? ? ? 1 4 2 WATER ? ? ? 1 5 2 'PEG 400' ? ? ? 1 6 2 'AMMONIUM ACETATE' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 123.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IIC' _diffrn_detector.pdbx_collection_date 1995-06 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'NI MIRROR + NI FILTER' _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 2HDD _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.000 _reflns.d_resolution_high 1.900 _reflns.number_obs 27136 _reflns.number_all ? _reflns.percent_possible_obs 94.000 _reflns.pdbx_Rmerge_I_obs 0.0350000 _reflns.pdbx_Rsym_value 0.0440000 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.400 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.900 _reflns_shell.d_res_low 1.970 _reflns_shell.percent_possible_all 84.00 _reflns_shell.Rmerge_I_obs 0.3800000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2HDD _refine.ls_number_reflns_obs 27136 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF 1000000000.000 _refine.pdbx_data_cutoff_low_absF 0.0000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 6.000 _refine.ls_d_res_high 1.900 _refine.ls_percent_reflns_obs 94.000 _refine.ls_R_factor_obs 0.2050000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2050000 _refine.ls_R_factor_R_free 0.2510000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.000 _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MIRAS _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 952 _refine_hist.pdbx_number_atoms_nucleic_acid 855 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 183 _refine_hist.number_atoms_total 1990 _refine_hist.d_res_high 1.900 _refine_hist.d_res_low 6.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.011 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.46 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 10 _refine_ls_shell.d_res_high 1.90 _refine_ls_shell.d_res_low 1.97 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work ? _refine_ls_shell.percent_reflns_obs 84.00 _refine_ls_shell.R_factor_R_free ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 10.00 _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PARHCSDX.PRO TOPHCSDX.PRO 'X-RAY DIFFRACTION' 2 PARNDBX.DNA TOPNDBX.DNA 'X-RAY DIFFRACTION' # _struct_ncs_oper.id 1 _struct_ncs_oper.code given _struct_ncs_oper.details ? _struct_ncs_oper.matrix[1][1] -0.703806 _struct_ncs_oper.matrix[1][2] -0.704302 _struct_ncs_oper.matrix[1][3] 0.092822 _struct_ncs_oper.matrix[2][1] -0.706709 _struct_ncs_oper.matrix[2][2] 0.707442 _struct_ncs_oper.matrix[2][3] 0.009334 _struct_ncs_oper.matrix[3][1] -0.072240 _struct_ncs_oper.matrix[3][2] -0.059029 _struct_ncs_oper.matrix[3][3] -0.995639 _struct_ncs_oper.vector[1] 18.45795 _struct_ncs_oper.vector[2] 8.83419 _struct_ncs_oper.vector[3] 93.71819 # _database_PDB_matrix.entry_id 2HDD _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2HDD _struct.title 'ENGRAILED HOMEODOMAIN Q50K VARIANT DNA COMPLEX' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2HDD _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA _struct_keywords.text 'DNA BINDING, COMPLEX (DNA BINDING PROTEIN-DNA), TRANSCRIPTION-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP HMEN_DROME 3 ? ? P02836 ? 2 PDB 2HDD 1 ? ? 2HDD ? 3 PDB 2HDD 2 ? ? 2HDD ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2HDD A 3 ? 61 ? P02836 454 ? 512 ? 1 59 2 1 2HDD B 3 ? 61 ? P02836 454 ? 512 ? 1 59 3 2 2HDD C 1 ? 21 ? 2HDD 1 ? 21 ? 1 21 4 3 2HDD D 1 ? 21 ? 2HDD 22 ? 42 ? 22 42 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2HDD LYS A 52 ? UNP P02836 GLN 503 'engineered mutation' 50 1 2 2HDD LYS B 52 ? UNP P02836 GLN 503 'engineered mutation' 50 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER C 12 ? GLU C 24 ? SER A 10 GLU A 22 1 ? 13 HELX_P HELX_P2 2 GLU C 30 ? LEU C 40 ? GLU A 28 LEU A 38 1 ? 11 HELX_P HELX_P3 3 GLU C 44 ? LYS C 59 ? GLU A 42 LYS A 57 1 ? 16 HELX_P HELX_P4 4 SER D 12 ? GLU D 24 ? SER B 10 GLU B 22 1 ? 13 HELX_P HELX_P5 5 GLU D 30 ? LEU D 40 ? GLU B 28 LEU B 38 1 ? 11 HELX_P HELX_P6 6 GLU D 44 ? ILE D 58 ? GLU B 42 ILE B 56 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 21 N1 ? ? C DT 2 D DA 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 21 N6 ? ? C DT 2 D DA 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 20 N1 ? ? C DT 3 D DA 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 20 N6 ? ? C DT 3 D DA 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 19 N1 ? ? C DT 4 D DA 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 19 N6 ? ? C DT 4 D DA 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 18 N3 ? ? C DG 5 D DC 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 18 O2 ? ? C DG 5 D DC 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 18 N4 ? ? C DG 5 D DC 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 17 N1 ? ? C DC 6 D DG 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 17 O6 ? ? C DC 6 D DG 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 17 N2 ? ? C DC 6 D DG 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 16 N1 ? ? C DC 7 D DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 16 O6 ? ? C DC 7 D DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 16 N2 ? ? C DC 7 D DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 15 N3 ? ? C DA 8 D DT 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 15 O4 ? ? C DA 8 D DT 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 14 N1 ? ? C DT 9 D DA 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 14 N6 ? ? C DT 9 D DA 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 13 N3 ? ? C DG 10 D DC 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 13 O2 ? ? C DG 10 D DC 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 13 N4 ? ? C DG 10 D DC 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DT 11 N3 ? ? ? 1_555 B DA 12 N1 ? ? C DT 11 D DA 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DT 11 O4 ? ? ? 1_555 B DA 12 N6 ? ? C DT 11 D DA 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DA 12 N1 ? ? ? 1_555 B DT 11 N3 ? ? C DA 12 D DT 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DA 12 N6 ? ? ? 1_555 B DT 11 O4 ? ? C DA 12 D DT 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DA 13 N1 ? ? ? 1_555 B DT 10 N3 ? ? C DA 13 D DT 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DA 13 N6 ? ? ? 1_555 B DT 10 O4 ? ? C DA 13 D DT 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DT 14 N3 ? ? ? 1_555 B DA 9 N1 ? ? C DT 14 D DA 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DT 14 O4 ? ? ? 1_555 B DA 9 N6 ? ? C DT 14 D DA 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DC 15 N3 ? ? ? 1_555 B DG 8 N1 ? ? C DC 15 D DG 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DC 15 N4 ? ? ? 1_555 B DG 8 O6 ? ? C DC 15 D DG 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DC 15 O2 ? ? ? 1_555 B DG 8 N2 ? ? C DC 15 D DG 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DC 16 N3 ? ? ? 1_555 B DG 7 N1 ? ? C DC 16 D DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DC 16 N4 ? ? ? 1_555 B DG 7 O6 ? ? C DC 16 D DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DC 16 O2 ? ? ? 1_555 B DG 7 N2 ? ? C DC 16 D DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DC 17 N3 ? ? ? 1_555 B DG 6 N1 ? ? C DC 17 D DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DC 17 N4 ? ? ? 1_555 B DG 6 O6 ? ? C DC 17 D DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DC 17 O2 ? ? ? 1_555 B DG 6 N2 ? ? C DC 17 D DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DC 18 N3 ? ? ? 1_555 B DG 5 N1 ? ? C DC 18 D DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DC 18 N4 ? ? ? 1_555 B DG 5 O6 ? ? C DC 18 D DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DC 18 O2 ? ? ? 1_555 B DG 5 N2 ? ? C DC 18 D DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A DG 19 N1 ? ? ? 1_555 B DC 4 N3 ? ? C DG 19 D DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A DG 19 N2 ? ? ? 1_555 B DC 4 O2 ? ? C DG 19 D DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A DG 19 O6 ? ? ? 1_555 B DC 4 N4 ? ? C DG 19 D DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A DG 20 N1 ? ? ? 1_555 B DC 3 N3 ? ? C DG 20 D DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A DG 20 N2 ? ? ? 1_555 B DC 3 O2 ? ? C DG 20 D DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A DG 20 O6 ? ? ? 1_555 B DC 3 N4 ? ? C DG 20 D DC 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A DA 21 N1 ? ? ? 1_555 B DT 2 N3 ? ? C DA 21 D DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A DA 21 N6 ? ? ? 1_555 B DT 2 O4 ? ? C DA 21 D DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" C DC 16 ? ? "C2'" C DC 16 ? ? "C1'" C DC 16 ? ? 97.49 102.40 -4.91 0.80 N 2 1 "C3'" D DT 36 ? ? "C2'" D DT 36 ? ? "C1'" D DT 36 ? ? 97.17 102.40 -5.23 0.80 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 58 ? ? -101.50 51.26 2 1 ARG B 3 ? ? 47.55 106.00 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DC C 16 ? ? 0.074 'SIDE CHAIN' 2 1 DC C 17 ? ? 0.063 'SIDE CHAIN' 3 1 DA D 22 ? ? 0.057 'SIDE CHAIN' 4 1 DG D 37 ? ? 0.086 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -1 ? C MET 1 2 1 Y 1 A ALA 0 ? C ALA 2 3 1 Y 1 A GLU 1 ? C GLU 3 4 1 Y 1 A LYS 2 ? C LYS 4 5 1 Y 1 A ARG 3 ? C ARG 5 6 1 Y 1 A PRO 4 ? C PRO 6 7 1 Y 1 B MET -1 ? D MET 1 8 1 Y 1 B ALA 0 ? D ALA 2 9 1 Y 1 B GLU 1 ? D GLU 3 10 1 Y 1 B LYS 58 ? D LYS 60 11 1 Y 1 B SER 59 ? D SER 61 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 DA OP3 O N N 58 DA P P N N 59 DA OP1 O N N 60 DA OP2 O N N 61 DA "O5'" O N N 62 DA "C5'" C N N 63 DA "C4'" C N R 64 DA "O4'" O N N 65 DA "C3'" C N S 66 DA "O3'" O N N 67 DA "C2'" C N N 68 DA "C1'" C N R 69 DA N9 N Y N 70 DA C8 C Y N 71 DA N7 N Y N 72 DA C5 C Y N 73 DA C6 C Y N 74 DA N6 N N N 75 DA N1 N Y N 76 DA C2 C Y N 77 DA N3 N Y N 78 DA C4 C Y N 79 DA HOP3 H N N 80 DA HOP2 H N N 81 DA "H5'" H N N 82 DA "H5''" H N N 83 DA "H4'" H N N 84 DA "H3'" H N N 85 DA "HO3'" H N N 86 DA "H2'" H N N 87 DA "H2''" H N N 88 DA "H1'" H N N 89 DA H8 H N N 90 DA H61 H N N 91 DA H62 H N N 92 DA H2 H N N 93 DC OP3 O N N 94 DC P P N N 95 DC OP1 O N N 96 DC OP2 O N N 97 DC "O5'" O N N 98 DC "C5'" C N N 99 DC "C4'" C N R 100 DC "O4'" O N N 101 DC "C3'" C N S 102 DC "O3'" O N N 103 DC "C2'" C N N 104 DC "C1'" C N R 105 DC N1 N N N 106 DC C2 C N N 107 DC O2 O N N 108 DC N3 N N N 109 DC C4 C N N 110 DC N4 N N N 111 DC C5 C N N 112 DC C6 C N N 113 DC HOP3 H N N 114 DC HOP2 H N N 115 DC "H5'" H N N 116 DC "H5''" H N N 117 DC "H4'" H N N 118 DC "H3'" H N N 119 DC "HO3'" H N N 120 DC "H2'" H N N 121 DC "H2''" H N N 122 DC "H1'" H N N 123 DC H41 H N N 124 DC H42 H N N 125 DC H5 H N N 126 DC H6 H N N 127 DG OP3 O N N 128 DG P P N N 129 DG OP1 O N N 130 DG OP2 O N N 131 DG "O5'" O N N 132 DG "C5'" C N N 133 DG "C4'" C N R 134 DG "O4'" O N N 135 DG "C3'" C N S 136 DG "O3'" O N N 137 DG "C2'" C N N 138 DG "C1'" C N R 139 DG N9 N Y N 140 DG C8 C Y N 141 DG N7 N Y N 142 DG C5 C Y N 143 DG C6 C N N 144 DG O6 O N N 145 DG N1 N N N 146 DG C2 C N N 147 DG N2 N N N 148 DG N3 N N N 149 DG C4 C Y N 150 DG HOP3 H N N 151 DG HOP2 H N N 152 DG "H5'" H N N 153 DG "H5''" H N N 154 DG "H4'" H N N 155 DG "H3'" H N N 156 DG "HO3'" H N N 157 DG "H2'" H N N 158 DG "H2''" H N N 159 DG "H1'" H N N 160 DG H8 H N N 161 DG H1 H N N 162 DG H21 H N N 163 DG H22 H N N 164 DT OP3 O N N 165 DT P P N N 166 DT OP1 O N N 167 DT OP2 O N N 168 DT "O5'" O N N 169 DT "C5'" C N N 170 DT "C4'" C N R 171 DT "O4'" O N N 172 DT "C3'" C N S 173 DT "O3'" O N N 174 DT "C2'" C N N 175 DT "C1'" C N R 176 DT N1 N N N 177 DT C2 C N N 178 DT O2 O N N 179 DT N3 N N N 180 DT C4 C N N 181 DT O4 O N N 182 DT C5 C N N 183 DT C7 C N N 184 DT C6 C N N 185 DT HOP3 H N N 186 DT HOP2 H N N 187 DT "H5'" H N N 188 DT "H5''" H N N 189 DT "H4'" H N N 190 DT "H3'" H N N 191 DT "HO3'" H N N 192 DT "H2'" H N N 193 DT "H2''" H N N 194 DT "H1'" H N N 195 DT H3 H N N 196 DT H71 H N N 197 DT H72 H N N 198 DT H73 H N N 199 DT H6 H N N 200 GLN N N N N 201 GLN CA C N S 202 GLN C C N N 203 GLN O O N N 204 GLN CB C N N 205 GLN CG C N N 206 GLN CD C N N 207 GLN OE1 O N N 208 GLN NE2 N N N 209 GLN OXT O N N 210 GLN H H N N 211 GLN H2 H N N 212 GLN HA H N N 213 GLN HB2 H N N 214 GLN HB3 H N N 215 GLN HG2 H N N 216 GLN HG3 H N N 217 GLN HE21 H N N 218 GLN HE22 H N N 219 GLN HXT H N N 220 GLU N N N N 221 GLU CA C N S 222 GLU C C N N 223 GLU O O N N 224 GLU CB C N N 225 GLU CG C N N 226 GLU CD C N N 227 GLU OE1 O N N 228 GLU OE2 O N N 229 GLU OXT O N N 230 GLU H H N N 231 GLU H2 H N N 232 GLU HA H N N 233 GLU HB2 H N N 234 GLU HB3 H N N 235 GLU HG2 H N N 236 GLU HG3 H N N 237 GLU HE2 H N N 238 GLU HXT H N N 239 GLY N N N N 240 GLY CA C N N 241 GLY C C N N 242 GLY O O N N 243 GLY OXT O N N 244 GLY H H N N 245 GLY H2 H N N 246 GLY HA2 H N N 247 GLY HA3 H N N 248 GLY HXT H N N 249 HOH O O N N 250 HOH H1 H N N 251 HOH H2 H N N 252 ILE N N N N 253 ILE CA C N S 254 ILE C C N N 255 ILE O O N N 256 ILE CB C N S 257 ILE CG1 C N N 258 ILE CG2 C N N 259 ILE CD1 C N N 260 ILE OXT O N N 261 ILE H H N N 262 ILE H2 H N N 263 ILE HA H N N 264 ILE HB H N N 265 ILE HG12 H N N 266 ILE HG13 H N N 267 ILE HG21 H N N 268 ILE HG22 H N N 269 ILE HG23 H N N 270 ILE HD11 H N N 271 ILE HD12 H N N 272 ILE HD13 H N N 273 ILE HXT H N N 274 LEU N N N N 275 LEU CA C N S 276 LEU C C N N 277 LEU O O N N 278 LEU CB C N N 279 LEU CG C N N 280 LEU CD1 C N N 281 LEU CD2 C N N 282 LEU OXT O N N 283 LEU H H N N 284 LEU H2 H N N 285 LEU HA H N N 286 LEU HB2 H N N 287 LEU HB3 H N N 288 LEU HG H N N 289 LEU HD11 H N N 290 LEU HD12 H N N 291 LEU HD13 H N N 292 LEU HD21 H N N 293 LEU HD22 H N N 294 LEU HD23 H N N 295 LEU HXT H N N 296 LYS N N N N 297 LYS CA C N S 298 LYS C C N N 299 LYS O O N N 300 LYS CB C N N 301 LYS CG C N N 302 LYS CD C N N 303 LYS CE C N N 304 LYS NZ N N N 305 LYS OXT O N N 306 LYS H H N N 307 LYS H2 H N N 308 LYS HA H N N 309 LYS HB2 H N N 310 LYS HB3 H N N 311 LYS HG2 H N N 312 LYS HG3 H N N 313 LYS HD2 H N N 314 LYS HD3 H N N 315 LYS HE2 H N N 316 LYS HE3 H N N 317 LYS HZ1 H N N 318 LYS HZ2 H N N 319 LYS HZ3 H N N 320 LYS HXT H N N 321 MET N N N N 322 MET CA C N S 323 MET C C N N 324 MET O O N N 325 MET CB C N N 326 MET CG C N N 327 MET SD S N N 328 MET CE C N N 329 MET OXT O N N 330 MET H H N N 331 MET H2 H N N 332 MET HA H N N 333 MET HB2 H N N 334 MET HB3 H N N 335 MET HG2 H N N 336 MET HG3 H N N 337 MET HE1 H N N 338 MET HE2 H N N 339 MET HE3 H N N 340 MET HXT H N N 341 PHE N N N N 342 PHE CA C N S 343 PHE C C N N 344 PHE O O N N 345 PHE CB C N N 346 PHE CG C Y N 347 PHE CD1 C Y N 348 PHE CD2 C Y N 349 PHE CE1 C Y N 350 PHE CE2 C Y N 351 PHE CZ C Y N 352 PHE OXT O N N 353 PHE H H N N 354 PHE H2 H N N 355 PHE HA H N N 356 PHE HB2 H N N 357 PHE HB3 H N N 358 PHE HD1 H N N 359 PHE HD2 H N N 360 PHE HE1 H N N 361 PHE HE2 H N N 362 PHE HZ H N N 363 PHE HXT H N N 364 PRO N N N N 365 PRO CA C N S 366 PRO C C N N 367 PRO O O N N 368 PRO CB C N N 369 PRO CG C N N 370 PRO CD C N N 371 PRO OXT O N N 372 PRO H H N N 373 PRO HA H N N 374 PRO HB2 H N N 375 PRO HB3 H N N 376 PRO HG2 H N N 377 PRO HG3 H N N 378 PRO HD2 H N N 379 PRO HD3 H N N 380 PRO HXT H N N 381 SER N N N N 382 SER CA C N S 383 SER C C N N 384 SER O O N N 385 SER CB C N N 386 SER OG O N N 387 SER OXT O N N 388 SER H H N N 389 SER H2 H N N 390 SER HA H N N 391 SER HB2 H N N 392 SER HB3 H N N 393 SER HG H N N 394 SER HXT H N N 395 THR N N N N 396 THR CA C N S 397 THR C C N N 398 THR O O N N 399 THR CB C N R 400 THR OG1 O N N 401 THR CG2 C N N 402 THR OXT O N N 403 THR H H N N 404 THR H2 H N N 405 THR HA H N N 406 THR HB H N N 407 THR HG1 H N N 408 THR HG21 H N N 409 THR HG22 H N N 410 THR HG23 H N N 411 THR HXT H N N 412 TRP N N N N 413 TRP CA C N S 414 TRP C C N N 415 TRP O O N N 416 TRP CB C N N 417 TRP CG C Y N 418 TRP CD1 C Y N 419 TRP CD2 C Y N 420 TRP NE1 N Y N 421 TRP CE2 C Y N 422 TRP CE3 C Y N 423 TRP CZ2 C Y N 424 TRP CZ3 C Y N 425 TRP CH2 C Y N 426 TRP OXT O N N 427 TRP H H N N 428 TRP H2 H N N 429 TRP HA H N N 430 TRP HB2 H N N 431 TRP HB3 H N N 432 TRP HD1 H N N 433 TRP HE1 H N N 434 TRP HE3 H N N 435 TRP HZ2 H N N 436 TRP HZ3 H N N 437 TRP HH2 H N N 438 TRP HXT H N N 439 TYR N N N N 440 TYR CA C N S 441 TYR C C N N 442 TYR O O N N 443 TYR CB C N N 444 TYR CG C Y N 445 TYR CD1 C Y N 446 TYR CD2 C Y N 447 TYR CE1 C Y N 448 TYR CE2 C Y N 449 TYR CZ C Y N 450 TYR OH O N N 451 TYR OXT O N N 452 TYR H H N N 453 TYR H2 H N N 454 TYR HA H N N 455 TYR HB2 H N N 456 TYR HB3 H N N 457 TYR HD1 H N N 458 TYR HD2 H N N 459 TYR HE1 H N N 460 TYR HE2 H N N 461 TYR HH H N N 462 TYR HXT H N N 463 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 DA OP3 P sing N N 55 DA OP3 HOP3 sing N N 56 DA P OP1 doub N N 57 DA P OP2 sing N N 58 DA P "O5'" sing N N 59 DA OP2 HOP2 sing N N 60 DA "O5'" "C5'" sing N N 61 DA "C5'" "C4'" sing N N 62 DA "C5'" "H5'" sing N N 63 DA "C5'" "H5''" sing N N 64 DA "C4'" "O4'" sing N N 65 DA "C4'" "C3'" sing N N 66 DA "C4'" "H4'" sing N N 67 DA "O4'" "C1'" sing N N 68 DA "C3'" "O3'" sing N N 69 DA "C3'" "C2'" sing N N 70 DA "C3'" "H3'" sing N N 71 DA "O3'" "HO3'" sing N N 72 DA "C2'" "C1'" sing N N 73 DA "C2'" "H2'" sing N N 74 DA "C2'" "H2''" sing N N 75 DA "C1'" N9 sing N N 76 DA "C1'" "H1'" sing N N 77 DA N9 C8 sing Y N 78 DA N9 C4 sing Y N 79 DA C8 N7 doub Y N 80 DA C8 H8 sing N N 81 DA N7 C5 sing Y N 82 DA C5 C6 sing Y N 83 DA C5 C4 doub Y N 84 DA C6 N6 sing N N 85 DA C6 N1 doub Y N 86 DA N6 H61 sing N N 87 DA N6 H62 sing N N 88 DA N1 C2 sing Y N 89 DA C2 N3 doub Y N 90 DA C2 H2 sing N N 91 DA N3 C4 sing Y N 92 DC OP3 P sing N N 93 DC OP3 HOP3 sing N N 94 DC P OP1 doub N N 95 DC P OP2 sing N N 96 DC P "O5'" sing N N 97 DC OP2 HOP2 sing N N 98 DC "O5'" "C5'" sing N N 99 DC "C5'" "C4'" sing N N 100 DC "C5'" "H5'" sing N N 101 DC "C5'" "H5''" sing N N 102 DC "C4'" "O4'" sing N N 103 DC "C4'" "C3'" sing N N 104 DC "C4'" "H4'" sing N N 105 DC "O4'" "C1'" sing N N 106 DC "C3'" "O3'" sing N N 107 DC "C3'" "C2'" sing N N 108 DC "C3'" "H3'" sing N N 109 DC "O3'" "HO3'" sing N N 110 DC "C2'" "C1'" sing N N 111 DC "C2'" "H2'" sing N N 112 DC "C2'" "H2''" sing N N 113 DC "C1'" N1 sing N N 114 DC "C1'" "H1'" sing N N 115 DC N1 C2 sing N N 116 DC N1 C6 sing N N 117 DC C2 O2 doub N N 118 DC C2 N3 sing N N 119 DC N3 C4 doub N N 120 DC C4 N4 sing N N 121 DC C4 C5 sing N N 122 DC N4 H41 sing N N 123 DC N4 H42 sing N N 124 DC C5 C6 doub N N 125 DC C5 H5 sing N N 126 DC C6 H6 sing N N 127 DG OP3 P sing N N 128 DG OP3 HOP3 sing N N 129 DG P OP1 doub N N 130 DG P OP2 sing N N 131 DG P "O5'" sing N N 132 DG OP2 HOP2 sing N N 133 DG "O5'" "C5'" sing N N 134 DG "C5'" "C4'" sing N N 135 DG "C5'" "H5'" sing N N 136 DG "C5'" "H5''" sing N N 137 DG "C4'" "O4'" sing N N 138 DG "C4'" "C3'" sing N N 139 DG "C4'" "H4'" sing N N 140 DG "O4'" "C1'" sing N N 141 DG "C3'" "O3'" sing N N 142 DG "C3'" "C2'" sing N N 143 DG "C3'" "H3'" sing N N 144 DG "O3'" "HO3'" sing N N 145 DG "C2'" "C1'" sing N N 146 DG "C2'" "H2'" sing N N 147 DG "C2'" "H2''" sing N N 148 DG "C1'" N9 sing N N 149 DG "C1'" "H1'" sing N N 150 DG N9 C8 sing Y N 151 DG N9 C4 sing Y N 152 DG C8 N7 doub Y N 153 DG C8 H8 sing N N 154 DG N7 C5 sing Y N 155 DG C5 C6 sing N N 156 DG C5 C4 doub Y N 157 DG C6 O6 doub N N 158 DG C6 N1 sing N N 159 DG N1 C2 sing N N 160 DG N1 H1 sing N N 161 DG C2 N2 sing N N 162 DG C2 N3 doub N N 163 DG N2 H21 sing N N 164 DG N2 H22 sing N N 165 DG N3 C4 sing N N 166 DT OP3 P sing N N 167 DT OP3 HOP3 sing N N 168 DT P OP1 doub N N 169 DT P OP2 sing N N 170 DT P "O5'" sing N N 171 DT OP2 HOP2 sing N N 172 DT "O5'" "C5'" sing N N 173 DT "C5'" "C4'" sing N N 174 DT "C5'" "H5'" sing N N 175 DT "C5'" "H5''" sing N N 176 DT "C4'" "O4'" sing N N 177 DT "C4'" "C3'" sing N N 178 DT "C4'" "H4'" sing N N 179 DT "O4'" "C1'" sing N N 180 DT "C3'" "O3'" sing N N 181 DT "C3'" "C2'" sing N N 182 DT "C3'" "H3'" sing N N 183 DT "O3'" "HO3'" sing N N 184 DT "C2'" "C1'" sing N N 185 DT "C2'" "H2'" sing N N 186 DT "C2'" "H2''" sing N N 187 DT "C1'" N1 sing N N 188 DT "C1'" "H1'" sing N N 189 DT N1 C2 sing N N 190 DT N1 C6 sing N N 191 DT C2 O2 doub N N 192 DT C2 N3 sing N N 193 DT N3 C4 sing N N 194 DT N3 H3 sing N N 195 DT C4 O4 doub N N 196 DT C4 C5 sing N N 197 DT C5 C7 sing N N 198 DT C5 C6 doub N N 199 DT C7 H71 sing N N 200 DT C7 H72 sing N N 201 DT C7 H73 sing N N 202 DT C6 H6 sing N N 203 GLN N CA sing N N 204 GLN N H sing N N 205 GLN N H2 sing N N 206 GLN CA C sing N N 207 GLN CA CB sing N N 208 GLN CA HA sing N N 209 GLN C O doub N N 210 GLN C OXT sing N N 211 GLN CB CG sing N N 212 GLN CB HB2 sing N N 213 GLN CB HB3 sing N N 214 GLN CG CD sing N N 215 GLN CG HG2 sing N N 216 GLN CG HG3 sing N N 217 GLN CD OE1 doub N N 218 GLN CD NE2 sing N N 219 GLN NE2 HE21 sing N N 220 GLN NE2 HE22 sing N N 221 GLN OXT HXT sing N N 222 GLU N CA sing N N 223 GLU N H sing N N 224 GLU N H2 sing N N 225 GLU CA C sing N N 226 GLU CA CB sing N N 227 GLU CA HA sing N N 228 GLU C O doub N N 229 GLU C OXT sing N N 230 GLU CB CG sing N N 231 GLU CB HB2 sing N N 232 GLU CB HB3 sing N N 233 GLU CG CD sing N N 234 GLU CG HG2 sing N N 235 GLU CG HG3 sing N N 236 GLU CD OE1 doub N N 237 GLU CD OE2 sing N N 238 GLU OE2 HE2 sing N N 239 GLU OXT HXT sing N N 240 GLY N CA sing N N 241 GLY N H sing N N 242 GLY N H2 sing N N 243 GLY CA C sing N N 244 GLY CA HA2 sing N N 245 GLY CA HA3 sing N N 246 GLY C O doub N N 247 GLY C OXT sing N N 248 GLY OXT HXT sing N N 249 HOH O H1 sing N N 250 HOH O H2 sing N N 251 ILE N CA sing N N 252 ILE N H sing N N 253 ILE N H2 sing N N 254 ILE CA C sing N N 255 ILE CA CB sing N N 256 ILE CA HA sing N N 257 ILE C O doub N N 258 ILE C OXT sing N N 259 ILE CB CG1 sing N N 260 ILE CB CG2 sing N N 261 ILE CB HB sing N N 262 ILE CG1 CD1 sing N N 263 ILE CG1 HG12 sing N N 264 ILE CG1 HG13 sing N N 265 ILE CG2 HG21 sing N N 266 ILE CG2 HG22 sing N N 267 ILE CG2 HG23 sing N N 268 ILE CD1 HD11 sing N N 269 ILE CD1 HD12 sing N N 270 ILE CD1 HD13 sing N N 271 ILE OXT HXT sing N N 272 LEU N CA sing N N 273 LEU N H sing N N 274 LEU N H2 sing N N 275 LEU CA C sing N N 276 LEU CA CB sing N N 277 LEU CA HA sing N N 278 LEU C O doub N N 279 LEU C OXT sing N N 280 LEU CB CG sing N N 281 LEU CB HB2 sing N N 282 LEU CB HB3 sing N N 283 LEU CG CD1 sing N N 284 LEU CG CD2 sing N N 285 LEU CG HG sing N N 286 LEU CD1 HD11 sing N N 287 LEU CD1 HD12 sing N N 288 LEU CD1 HD13 sing N N 289 LEU CD2 HD21 sing N N 290 LEU CD2 HD22 sing N N 291 LEU CD2 HD23 sing N N 292 LEU OXT HXT sing N N 293 LYS N CA sing N N 294 LYS N H sing N N 295 LYS N H2 sing N N 296 LYS CA C sing N N 297 LYS CA CB sing N N 298 LYS CA HA sing N N 299 LYS C O doub N N 300 LYS C OXT sing N N 301 LYS CB CG sing N N 302 LYS CB HB2 sing N N 303 LYS CB HB3 sing N N 304 LYS CG CD sing N N 305 LYS CG HG2 sing N N 306 LYS CG HG3 sing N N 307 LYS CD CE sing N N 308 LYS CD HD2 sing N N 309 LYS CD HD3 sing N N 310 LYS CE NZ sing N N 311 LYS CE HE2 sing N N 312 LYS CE HE3 sing N N 313 LYS NZ HZ1 sing N N 314 LYS NZ HZ2 sing N N 315 LYS NZ HZ3 sing N N 316 LYS OXT HXT sing N N 317 MET N CA sing N N 318 MET N H sing N N 319 MET N H2 sing N N 320 MET CA C sing N N 321 MET CA CB sing N N 322 MET CA HA sing N N 323 MET C O doub N N 324 MET C OXT sing N N 325 MET CB CG sing N N 326 MET CB HB2 sing N N 327 MET CB HB3 sing N N 328 MET CG SD sing N N 329 MET CG HG2 sing N N 330 MET CG HG3 sing N N 331 MET SD CE sing N N 332 MET CE HE1 sing N N 333 MET CE HE2 sing N N 334 MET CE HE3 sing N N 335 MET OXT HXT sing N N 336 PHE N CA sing N N 337 PHE N H sing N N 338 PHE N H2 sing N N 339 PHE CA C sing N N 340 PHE CA CB sing N N 341 PHE CA HA sing N N 342 PHE C O doub N N 343 PHE C OXT sing N N 344 PHE CB CG sing N N 345 PHE CB HB2 sing N N 346 PHE CB HB3 sing N N 347 PHE CG CD1 doub Y N 348 PHE CG CD2 sing Y N 349 PHE CD1 CE1 sing Y N 350 PHE CD1 HD1 sing N N 351 PHE CD2 CE2 doub Y N 352 PHE CD2 HD2 sing N N 353 PHE CE1 CZ doub Y N 354 PHE CE1 HE1 sing N N 355 PHE CE2 CZ sing Y N 356 PHE CE2 HE2 sing N N 357 PHE CZ HZ sing N N 358 PHE OXT HXT sing N N 359 PRO N CA sing N N 360 PRO N CD sing N N 361 PRO N H sing N N 362 PRO CA C sing N N 363 PRO CA CB sing N N 364 PRO CA HA sing N N 365 PRO C O doub N N 366 PRO C OXT sing N N 367 PRO CB CG sing N N 368 PRO CB HB2 sing N N 369 PRO CB HB3 sing N N 370 PRO CG CD sing N N 371 PRO CG HG2 sing N N 372 PRO CG HG3 sing N N 373 PRO CD HD2 sing N N 374 PRO CD HD3 sing N N 375 PRO OXT HXT sing N N 376 SER N CA sing N N 377 SER N H sing N N 378 SER N H2 sing N N 379 SER CA C sing N N 380 SER CA CB sing N N 381 SER CA HA sing N N 382 SER C O doub N N 383 SER C OXT sing N N 384 SER CB OG sing N N 385 SER CB HB2 sing N N 386 SER CB HB3 sing N N 387 SER OG HG sing N N 388 SER OXT HXT sing N N 389 THR N CA sing N N 390 THR N H sing N N 391 THR N H2 sing N N 392 THR CA C sing N N 393 THR CA CB sing N N 394 THR CA HA sing N N 395 THR C O doub N N 396 THR C OXT sing N N 397 THR CB OG1 sing N N 398 THR CB CG2 sing N N 399 THR CB HB sing N N 400 THR OG1 HG1 sing N N 401 THR CG2 HG21 sing N N 402 THR CG2 HG22 sing N N 403 THR CG2 HG23 sing N N 404 THR OXT HXT sing N N 405 TRP N CA sing N N 406 TRP N H sing N N 407 TRP N H2 sing N N 408 TRP CA C sing N N 409 TRP CA CB sing N N 410 TRP CA HA sing N N 411 TRP C O doub N N 412 TRP C OXT sing N N 413 TRP CB CG sing N N 414 TRP CB HB2 sing N N 415 TRP CB HB3 sing N N 416 TRP CG CD1 doub Y N 417 TRP CG CD2 sing Y N 418 TRP CD1 NE1 sing Y N 419 TRP CD1 HD1 sing N N 420 TRP CD2 CE2 doub Y N 421 TRP CD2 CE3 sing Y N 422 TRP NE1 CE2 sing Y N 423 TRP NE1 HE1 sing N N 424 TRP CE2 CZ2 sing Y N 425 TRP CE3 CZ3 doub Y N 426 TRP CE3 HE3 sing N N 427 TRP CZ2 CH2 doub Y N 428 TRP CZ2 HZ2 sing N N 429 TRP CZ3 CH2 sing Y N 430 TRP CZ3 HZ3 sing N N 431 TRP CH2 HH2 sing N N 432 TRP OXT HXT sing N N 433 TYR N CA sing N N 434 TYR N H sing N N 435 TYR N H2 sing N N 436 TYR CA C sing N N 437 TYR CA CB sing N N 438 TYR CA HA sing N N 439 TYR C O doub N N 440 TYR C OXT sing N N 441 TYR CB CG sing N N 442 TYR CB HB2 sing N N 443 TYR CB HB3 sing N N 444 TYR CG CD1 doub Y N 445 TYR CG CD2 sing Y N 446 TYR CD1 CE1 sing Y N 447 TYR CD1 HD1 sing N N 448 TYR CD2 CE2 doub Y N 449 TYR CD2 HD2 sing N N 450 TYR CE1 CZ doub Y N 451 TYR CE1 HE1 sing N N 452 TYR CE2 CZ sing Y N 453 TYR CE2 HE2 sing N N 454 TYR CZ OH sing N N 455 TYR OH HH sing N N 456 TYR OXT HXT sing N N 457 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2HDD 'double helix' 2HDD 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 2 1_555 B DA 21 1_555 0.265 -0.202 0.210 -5.860 -6.327 -0.243 1 C_DT2:DA42_D C 2 ? D 42 ? 20 1 1 A DT 3 1_555 B DA 20 1_555 -0.326 -0.203 0.229 -4.295 -0.055 3.221 2 C_DT3:DA41_D C 3 ? D 41 ? 20 1 1 A DT 4 1_555 B DA 19 1_555 -0.020 -0.366 0.372 -5.575 -12.400 5.885 3 C_DT4:DA40_D C 4 ? D 40 ? 20 1 1 A DG 5 1_555 B DC 18 1_555 -0.067 -0.003 -0.402 -10.505 -7.671 -2.508 4 C_DG5:DC39_D C 5 ? D 39 ? 19 1 1 A DC 6 1_555 B DG 17 1_555 -0.305 -0.168 -0.428 5.111 -0.156 4.803 5 C_DC6:DG38_D C 6 ? D 38 ? 19 1 1 A DC 7 1_555 B DG 16 1_555 0.656 -0.267 0.321 -0.086 -9.126 1.973 6 C_DC7:DG37_D C 7 ? D 37 ? 19 1 1 A DA 8 1_555 B DT 15 1_555 0.106 -0.340 -0.039 -1.767 -7.589 -3.615 7 C_DA8:DT36_D C 8 ? D 36 ? 20 1 1 A DT 9 1_555 B DA 14 1_555 -0.839 -0.290 -0.086 0.501 -4.373 -7.042 8 C_DT9:DA35_D C 9 ? D 35 ? 20 1 1 A DG 10 1_555 B DC 13 1_555 -0.154 -0.242 0.232 1.826 1.268 3.335 9 C_DG10:DC34_D C 10 ? D 34 ? 19 1 1 A DT 11 1_555 B DA 12 1_555 0.006 0.033 -0.138 4.826 -5.152 7.326 10 C_DT11:DA33_D C 11 ? D 33 ? 20 1 1 A DA 12 1_555 B DT 11 1_555 0.113 -0.162 0.067 6.770 -17.126 2.239 11 C_DA12:DT32_D C 12 ? D 32 ? 20 1 1 A DA 13 1_555 B DT 10 1_555 0.431 -0.166 0.265 -0.665 -11.583 2.768 12 C_DA13:DT31_D C 13 ? D 31 ? 20 1 1 A DT 14 1_555 B DA 9 1_555 -0.048 -0.135 0.137 -0.806 -14.888 -0.481 13 C_DT14:DA30_D C 14 ? D 30 ? 20 1 1 A DC 15 1_555 B DG 8 1_555 0.215 -0.198 0.250 -6.302 -15.376 -1.269 14 C_DC15:DG29_D C 15 ? D 29 ? 19 1 1 A DC 16 1_555 B DG 7 1_555 -0.239 -0.327 0.086 2.713 -3.477 -4.512 15 C_DC16:DG28_D C 16 ? D 28 ? 19 1 1 A DC 17 1_555 B DG 6 1_555 0.368 -0.312 0.083 8.313 -12.116 -1.045 16 C_DC17:DG27_D C 17 ? D 27 ? 19 1 1 A DC 18 1_555 B DG 5 1_555 0.136 -0.201 0.232 -14.079 -3.785 -0.552 17 C_DC18:DG26_D C 18 ? D 26 ? 19 1 1 A DG 19 1_555 B DC 4 1_555 -0.199 -0.263 -0.485 -0.459 -0.375 1.417 18 C_DG19:DC25_D C 19 ? D 25 ? 19 1 1 A DG 20 1_555 B DC 3 1_555 -0.175 -0.386 -0.455 -2.602 -8.916 -0.223 19 C_DG20:DC24_D C 20 ? D 24 ? 19 1 1 A DA 21 1_555 B DT 2 1_555 -0.127 -0.066 -0.149 0.779 -14.757 2.480 20 C_DA21:DT23_D C 21 ? D 23 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 2 1_555 B DA 21 1_555 A DT 3 1_555 B DA 20 1_555 1.428 0.518 3.353 3.072 3.738 34.770 0.270 -1.885 3.497 6.217 -5.111 35.095 1 CC_DT2DT3:DA41DA42_DD C 2 ? D 42 ? C 3 ? D 41 ? 1 A DT 3 1_555 B DA 20 1_555 A DT 4 1_555 B DA 19 1_555 -0.282 -0.246 3.257 -3.668 6.782 31.928 -1.592 -0.127 3.152 12.109 6.549 32.822 2 CC_DT3DT4:DA40DA41_DD C 3 ? D 41 ? C 4 ? D 40 ? 1 A DT 4 1_555 B DA 19 1_555 A DG 5 1_555 B DC 18 1_555 -0.408 -0.395 3.461 6.955 3.025 37.245 -1.009 1.552 3.294 4.678 -10.753 37.982 3 CC_DT4DG5:DC39DA40_DD C 4 ? D 40 ? C 5 ? D 39 ? 1 A DG 5 1_555 B DC 18 1_555 A DC 6 1_555 B DG 17 1_555 0.407 -0.073 2.789 -0.483 4.883 27.743 -1.121 -0.933 2.729 10.084 0.998 28.165 4 CC_DG5DC6:DG38DC39_DD C 5 ? D 39 ? C 6 ? D 38 ? 1 A DC 6 1_555 B DG 17 1_555 A DC 7 1_555 B DG 16 1_555 -0.516 0.397 3.647 -6.728 -3.917 35.960 1.230 -0.212 3.621 -6.254 10.743 36.766 5 CC_DC6DC7:DG37DG38_DD C 6 ? D 38 ? C 7 ? D 37 ? 1 A DC 7 1_555 B DG 16 1_555 A DA 8 1_555 B DT 15 1_555 -0.317 0.506 3.358 2.588 -5.739 45.274 1.160 0.638 3.252 -7.413 -3.342 45.687 6 CC_DC7DA8:DT36DG37_DD C 7 ? D 37 ? C 8 ? D 36 ? 1 A DA 8 1_555 B DT 15 1_555 A DT 9 1_555 B DA 14 1_555 -0.208 -0.390 3.301 -1.707 -3.494 26.505 0.080 0.000 3.330 -7.570 3.698 26.784 7 CC_DA8DT9:DA35DT36_DD C 8 ? D 36 ? C 9 ? D 35 ? 1 A DT 9 1_555 B DA 14 1_555 A DG 10 1_555 B DC 13 1_555 0.852 0.049 3.270 0.370 -0.320 41.961 0.102 -1.152 3.276 -0.447 -0.517 41.964 8 CC_DT9DG10:DC34DA35_DD C 9 ? D 35 ? C 10 ? D 34 ? 1 A DG 10 1_555 B DC 13 1_555 A DT 11 1_555 B DA 12 1_555 0.291 -0.285 3.126 3.693 7.480 27.054 -2.233 0.218 2.956 15.527 -7.666 28.288 9 CC_DG10DT11:DA33DC34_DD C 10 ? D 34 ? C 11 ? D 33 ? 1 A DT 11 1_555 B DA 12 1_555 A DA 12 1_555 B DT 11 1_555 -0.883 0.979 3.281 -1.647 1.289 41.243 1.247 1.073 3.340 1.829 2.337 41.293 10 CC_DT11DA12:DT32DA33_DD C 11 ? D 33 ? C 12 ? D 32 ? 1 A DA 12 1_555 B DT 11 1_555 A DA 13 1_555 B DT 10 1_555 0.454 -0.550 3.369 -1.991 -0.382 36.366 -0.825 -1.010 3.346 -0.611 3.187 36.421 11 CC_DA12DA13:DT31DT32_DD C 12 ? D 32 ? C 13 ? D 31 ? 1 A DA 13 1_555 B DT 10 1_555 A DT 14 1_555 B DA 9 1_555 -0.611 -0.937 3.184 1.437 2.967 31.527 -2.239 1.371 3.055 5.443 -2.635 31.694 12 CC_DA13DT14:DA30DT31_DD C 13 ? D 31 ? C 14 ? D 30 ? 1 A DT 14 1_555 B DA 9 1_555 A DC 15 1_555 B DG 8 1_555 -0.370 -0.470 3.414 -2.185 -1.431 35.032 -0.554 0.271 3.445 -2.373 3.623 35.126 13 CC_DT14DC15:DG29DA30_DD C 14 ? D 30 ? C 15 ? D 29 ? 1 A DC 15 1_555 B DG 8 1_555 A DC 16 1_555 B DG 7 1_555 0.254 -0.541 3.100 -1.242 10.916 26.104 -3.425 -0.784 2.649 22.918 2.607 28.285 14 CC_DC15DC16:DG28DG29_DD C 15 ? D 29 ? C 16 ? D 28 ? 1 A DC 16 1_555 B DG 7 1_555 A DC 17 1_555 B DG 6 1_555 0.158 -0.264 3.239 -1.273 4.389 36.699 -0.998 -0.418 3.180 6.938 2.012 36.973 15 CC_DC16DC17:DG27DG28_DD C 16 ? D 28 ? C 17 ? D 27 ? 1 A DC 17 1_555 B DG 6 1_555 A DC 18 1_555 B DG 5 1_555 0.125 -0.860 3.774 0.732 0.445 39.183 -1.343 -0.086 3.766 0.663 -1.091 39.192 16 CC_DC17DC18:DG26DG27_DD C 17 ? D 27 ? C 18 ? D 26 ? 1 A DC 18 1_555 B DG 5 1_555 A DG 19 1_555 B DC 4 1_555 -0.123 0.299 3.113 6.608 11.049 28.124 -1.516 1.473 2.921 21.377 -12.784 30.877 17 CC_DC18DG19:DC25DG26_DD C 18 ? D 26 ? C 19 ? D 25 ? 1 A DG 19 1_555 B DC 4 1_555 A DG 20 1_555 B DC 3 1_555 -0.114 -0.196 3.422 -0.962 11.149 30.598 -2.374 0.028 3.161 20.294 1.751 32.534 18 CC_DG19DG20:DC24DC25_DD C 19 ? D 25 ? C 20 ? D 24 ? 1 A DG 20 1_555 B DC 3 1_555 A DA 21 1_555 B DT 2 1_555 0.371 -0.242 3.226 -1.881 3.887 33.270 -1.045 -0.945 3.153 6.753 3.268 33.541 19 CC_DG20DA21:DT23DC24_DD C 20 ? D 24 ? C 21 ? D 23 ? # _atom_sites.entry_id 2HDD _atom_sites.fract_transf_matrix[1][1] 0.007830 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.004435 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022056 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015859 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_