HEADER OXIDOREDUCTASE 20-JUN-06 2HDJ TITLE CRYSTAL STRUCTURE OF HUMAN TYPE 3 3ALPHA-HYDROXYSTEROID DEHYDROGENASE TITLE 2 IN COMPLEX WITH NADP(H) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALDO-KETO REDUCTASE FAMILY 1 MEMBER C2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TRANS-1,2- DIHYDROBENZENE-1,2-DIOL DEHYDROGENASE, TYPE III COMPND 5 3- ALPHA-HYDROXYSTEROID DEHYDROGENASE, 3-ALPHA-HSD3, CHLORDECONE COMPND 6 REDUCTASE HOMOLOG HAKRD, DIHYDRODIOL DEHYDROGENASE/BILE ACID-BINDING COMPND 7 PROTEIN, DD/BABP, DIHYDRODIOL DEHYDROGENASE 2, DD2; COMPND 8 EC: 1.-.-.-, 1.3.1.20, 1.1.1.213; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AKR1C2, DDH2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX KEYWDS HUMAN 3ALPHAHDS3, ALDO-KETO REDUCTASE, NADPH, AKR, AKR1C2, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR F.FAUCHER,K.PEREIRA DE JESUS-TRAN,L.CANTIN,V.LUU-THE,F.LABRIE, AUTHOR 2 R.BRETON REVDAT 3 30-AUG-23 2HDJ 1 REMARK REVDAT 2 24-FEB-09 2HDJ 1 VERSN REVDAT 1 05-DEC-06 2HDJ 0 JRNL AUTH F.FAUCHER,K.PEREIRA DE JESUS-TRAN,L.CANTIN,V.LUU-THE, JRNL AUTH 2 F.LABRIE,R.BRETON JRNL TITL CRYSTAL STRUCTURES OF MOUSE 17ALPHA-HYDROXYSTEROID JRNL TITL 2 DEHYDROGENASE (APOENZYME AND ENZYME-NADP(H) BINARY COMPLEX): JRNL TITL 3 IDENTIFICATION OF MOLECULAR DETERMINANTS RESPONSIBLE FOR THE JRNL TITL 4 UNIQUE 17ALPHA-REDUCTIVE ACTIVITY OF THIS ENZYME. JRNL REF J.MOL.BIOL. V. 364 747 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 17034817 JRNL DOI 10.1016/J.JMB.2006.09.030 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 9579143.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 54442 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2778 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 8589 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 447 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.015 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5162 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 140 REMARK 3 SOLVENT ATOMS : 548 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.72000 REMARK 3 B22 (A**2) : 2.72000 REMARK 3 B33 (A**2) : -5.44000 REMARK 3 B12 (A**2) : 3.75000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM SIGMAA (A) : 0.24 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.29 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.110 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.210 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.780 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.840 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.420 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 61.45 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : LIGANDS_.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : LIGANDS_.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2HDJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1000038226. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IIC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54795 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 19.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.8900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.42100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1XJB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% PEG-4000, 0.1M MES, 0.2M (NH4)2AC, REMARK 280 0.01M EDTA, PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 71.92000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 41.52303 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 68.08333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 71.92000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 41.52303 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 68.08333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 71.92000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 41.52303 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 68.08333 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 71.92000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 41.52303 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 68.08333 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 71.92000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 41.52303 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 68.08333 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 71.92000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 41.52303 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 68.08333 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 83.04606 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 136.16667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 83.04606 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 136.16667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 83.04606 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 136.16667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 83.04606 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 136.16667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 83.04606 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 136.16667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 83.04606 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 136.16667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 143.84000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 71.92000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 124.56909 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 83.04606 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 340.41667 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 648 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 668 O HOH B 668 2655 1.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 11 0.46 -65.65 REMARK 500 PHE A 197 77.83 -153.78 REMARK 500 SER A 221 167.23 73.47 REMARK 500 ARG A 250 -149.09 -122.89 REMARK 500 SER A 271 129.56 -171.25 REMARK 500 SER B 3 -38.03 72.67 REMARK 500 PHE B 197 78.39 -159.13 REMARK 500 SER B 221 169.98 74.20 REMARK 500 ARG B 250 -132.74 -123.60 REMARK 500 ASN B 300 109.27 -56.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 606 DBREF 2HDJ A 1 323 UNP P52895 AK1C2_HUMAN 1 323 DBREF 2HDJ B 1 323 UNP P52895 AK1C2_HUMAN 1 323 SEQRES 1 A 323 MET ASP SER LYS TYR GLN CYS VAL LYS LEU ASN ASP GLY SEQRES 2 A 323 HIS PHE MET PRO VAL LEU GLY PHE GLY THR TYR ALA PRO SEQRES 3 A 323 ALA GLU VAL PRO LYS SER LYS ALA LEU GLU ALA VAL LYS SEQRES 4 A 323 LEU ALA ILE GLU ALA GLY PHE HIS HIS ILE ASP SER ALA SEQRES 5 A 323 HIS VAL TYR ASN ASN GLU GLU GLN VAL GLY LEU ALA ILE SEQRES 6 A 323 ARG SER LYS ILE ALA ASP GLY SER VAL LYS ARG GLU ASP SEQRES 7 A 323 ILE PHE TYR THR SER LYS LEU TRP SER ASN SER HIS ARG SEQRES 8 A 323 PRO GLU LEU VAL ARG PRO ALA LEU GLU ARG SER LEU LYS SEQRES 9 A 323 ASN LEU GLN LEU ASP TYR VAL ASP LEU TYR LEU ILE HIS SEQRES 10 A 323 PHE PRO VAL SER VAL LYS PRO GLY GLU GLU VAL ILE PRO SEQRES 11 A 323 LYS ASP GLU ASN GLY LYS ILE LEU PHE ASP THR VAL ASP SEQRES 12 A 323 LEU CYS ALA THR TRP GLU ALA MET GLU LYS CYS LYS ASP SEQRES 13 A 323 ALA GLY LEU ALA LYS SER ILE GLY VAL SER ASN PHE ASN SEQRES 14 A 323 HIS ARG LEU LEU GLU MET ILE LEU ASN LYS PRO GLY LEU SEQRES 15 A 323 LYS TYR LYS PRO VAL CYS ASN GLN VAL GLU CYS HIS PRO SEQRES 16 A 323 TYR PHE ASN GLN ARG LYS LEU LEU ASP PHE CYS LYS SER SEQRES 17 A 323 LYS ASP ILE VAL LEU VAL ALA TYR SER ALA LEU GLY SER SEQRES 18 A 323 HIS ARG GLU GLU PRO TRP VAL ASP PRO ASN SER PRO VAL SEQRES 19 A 323 LEU LEU GLU ASP PRO VAL LEU CYS ALA LEU ALA LYS LYS SEQRES 20 A 323 HIS LYS ARG THR PRO ALA LEU ILE ALA LEU ARG TYR GLN SEQRES 21 A 323 LEU GLN ARG GLY VAL VAL VAL LEU ALA LYS SER TYR ASN SEQRES 22 A 323 GLU GLN ARG ILE ARG GLN ASN VAL GLN VAL PHE GLU PHE SEQRES 23 A 323 GLN LEU THR SER GLU GLU MET LYS ALA ILE ASP GLY LEU SEQRES 24 A 323 ASN ARG ASN VAL ARG TYR LEU THR LEU ASP ILE PHE ALA SEQRES 25 A 323 GLY PRO PRO ASN TYR PRO PHE SER ASP GLU TYR SEQRES 1 B 323 MET ASP SER LYS TYR GLN CYS VAL LYS LEU ASN ASP GLY SEQRES 2 B 323 HIS PHE MET PRO VAL LEU GLY PHE GLY THR TYR ALA PRO SEQRES 3 B 323 ALA GLU VAL PRO LYS SER LYS ALA LEU GLU ALA VAL LYS SEQRES 4 B 323 LEU ALA ILE GLU ALA GLY PHE HIS HIS ILE ASP SER ALA SEQRES 5 B 323 HIS VAL TYR ASN ASN GLU GLU GLN VAL GLY LEU ALA ILE SEQRES 6 B 323 ARG SER LYS ILE ALA ASP GLY SER VAL LYS ARG GLU ASP SEQRES 7 B 323 ILE PHE TYR THR SER LYS LEU TRP SER ASN SER HIS ARG SEQRES 8 B 323 PRO GLU LEU VAL ARG PRO ALA LEU GLU ARG SER LEU LYS SEQRES 9 B 323 ASN LEU GLN LEU ASP TYR VAL ASP LEU TYR LEU ILE HIS SEQRES 10 B 323 PHE PRO VAL SER VAL LYS PRO GLY GLU GLU VAL ILE PRO SEQRES 11 B 323 LYS ASP GLU ASN GLY LYS ILE LEU PHE ASP THR VAL ASP SEQRES 12 B 323 LEU CYS ALA THR TRP GLU ALA MET GLU LYS CYS LYS ASP SEQRES 13 B 323 ALA GLY LEU ALA LYS SER ILE GLY VAL SER ASN PHE ASN SEQRES 14 B 323 HIS ARG LEU LEU GLU MET ILE LEU ASN LYS PRO GLY LEU SEQRES 15 B 323 LYS TYR LYS PRO VAL CYS ASN GLN VAL GLU CYS HIS PRO SEQRES 16 B 323 TYR PHE ASN GLN ARG LYS LEU LEU ASP PHE CYS LYS SER SEQRES 17 B 323 LYS ASP ILE VAL LEU VAL ALA TYR SER ALA LEU GLY SER SEQRES 18 B 323 HIS ARG GLU GLU PRO TRP VAL ASP PRO ASN SER PRO VAL SEQRES 19 B 323 LEU LEU GLU ASP PRO VAL LEU CYS ALA LEU ALA LYS LYS SEQRES 20 B 323 HIS LYS ARG THR PRO ALA LEU ILE ALA LEU ARG TYR GLN SEQRES 21 B 323 LEU GLN ARG GLY VAL VAL VAL LEU ALA LYS SER TYR ASN SEQRES 22 B 323 GLU GLN ARG ILE ARG GLN ASN VAL GLN VAL PHE GLU PHE SEQRES 23 B 323 GLN LEU THR SER GLU GLU MET LYS ALA ILE ASP GLY LEU SEQRES 24 B 323 ASN ARG ASN VAL ARG TYR LEU THR LEU ASP ILE PHE ALA SEQRES 25 B 323 GLY PRO PRO ASN TYR PRO PHE SER ASP GLU TYR HET SO4 A 401 5 HET NDP A 501 48 HET EDO A 604 4 HET EDO A 605 4 HET EDO A 606 4 HET SO4 B 402 5 HET SO4 B 403 5 HET SO4 B 404 5 HET NDP B 501 48 HET EDO B 601 4 HET EDO B 602 4 HET EDO B 603 4 HETNAM SO4 SULFATE ION HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 SO4 4(O4 S 2-) FORMUL 4 NDP 2(C21 H30 N7 O17 P3) FORMUL 5 EDO 6(C2 H6 O2) FORMUL 15 HOH *548(H2 O) HELIX 1 1 LYS A 31 GLY A 45 1 15 HELIX 2 2 ALA A 52 ASN A 56 5 5 HELIX 3 3 ASN A 57 ASP A 71 1 15 HELIX 4 4 LYS A 75 ILE A 79 5 5 HELIX 5 5 TRP A 86 HIS A 90 5 5 HELIX 6 6 ARG A 91 GLU A 93 5 3 HELIX 7 7 LEU A 94 GLN A 107 1 14 HELIX 8 8 ASP A 143 ALA A 157 1 15 HELIX 9 9 ASN A 169 ASN A 178 1 10 HELIX 10 10 GLN A 199 LYS A 209 1 11 HELIX 11 11 VAL A 234 GLU A 237 5 4 HELIX 12 12 ASP A 238 LYS A 249 1 12 HELIX 13 13 THR A 251 GLN A 262 1 12 HELIX 14 14 ASN A 273 VAL A 281 1 9 HELIX 15 15 GLN A 282 GLU A 285 5 4 HELIX 16 16 THR A 289 GLY A 298 1 10 HELIX 17 17 LEU A 308 ALA A 312 5 5 HELIX 18 18 LYS B 31 GLY B 45 1 15 HELIX 19 19 ALA B 52 ASN B 56 5 5 HELIX 20 20 ASN B 57 ASP B 71 1 15 HELIX 21 21 LYS B 75 ILE B 79 5 5 HELIX 22 22 TRP B 86 HIS B 90 5 5 HELIX 23 23 ARG B 91 GLU B 93 5 3 HELIX 24 24 LEU B 94 GLN B 107 1 14 HELIX 25 25 ASP B 143 ALA B 157 1 15 HELIX 26 26 ASN B 169 ASN B 178 1 10 HELIX 27 27 GLN B 199 LYS B 209 1 11 HELIX 28 28 VAL B 234 GLU B 237 5 4 HELIX 29 29 ASP B 238 LYS B 249 1 12 HELIX 30 30 THR B 251 ARG B 263 1 13 HELIX 31 31 ASN B 273 VAL B 281 1 9 HELIX 32 32 GLN B 282 GLU B 285 5 4 HELIX 33 33 THR B 289 GLY B 298 1 10 HELIX 34 34 LEU B 308 ALA B 312 5 5 SHEET 1 A 2 CYS A 7 LYS A 9 0 SHEET 2 A 2 PHE A 15 PRO A 17 -1 O MET A 16 N VAL A 8 SHEET 1 B 9 LEU A 19 GLY A 22 0 SHEET 2 B 9 HIS A 48 ASP A 50 1 O ASP A 50 N PHE A 21 SHEET 3 B 9 PHE A 80 LEU A 85 1 O PHE A 80 N ILE A 49 SHEET 4 B 9 VAL A 111 ILE A 116 1 O LEU A 115 N LEU A 85 SHEET 5 B 9 ALA A 160 SER A 166 1 O LYS A 161 N VAL A 111 SHEET 6 B 9 CYS A 188 GLU A 192 1 O GLN A 190 N VAL A 165 SHEET 7 B 9 VAL A 212 TYR A 216 1 O VAL A 214 N VAL A 191 SHEET 8 B 9 VAL A 266 LYS A 270 1 O VAL A 266 N ALA A 215 SHEET 9 B 9 LEU A 19 GLY A 22 1 N GLY A 20 O VAL A 267 SHEET 1 C 2 CYS B 7 LYS B 9 0 SHEET 2 C 2 PHE B 15 PRO B 17 -1 O MET B 16 N VAL B 8 SHEET 1 D 9 LEU B 19 GLY B 22 0 SHEET 2 D 9 HIS B 48 ASP B 50 1 O HIS B 48 N PHE B 21 SHEET 3 D 9 PHE B 80 LEU B 85 1 O THR B 82 N ILE B 49 SHEET 4 D 9 VAL B 111 ILE B 116 1 O LEU B 115 N LEU B 85 SHEET 5 D 9 ALA B 160 SER B 166 1 O GLY B 164 N TYR B 114 SHEET 6 D 9 CYS B 188 GLU B 192 1 O CYS B 188 N VAL B 165 SHEET 7 D 9 VAL B 212 TYR B 216 1 O VAL B 214 N VAL B 191 SHEET 8 D 9 VAL B 266 LYS B 270 1 O VAL B 266 N ALA B 215 SHEET 9 D 9 LEU B 19 GLY B 22 1 N GLY B 20 O VAL B 267 CISPEP 1 GLU A 225 PRO A 226 0 0.04 CISPEP 2 GLU B 225 PRO B 226 0 -0.03 SITE 1 AC1 6 LYS A 39 LYS A 68 HOH A 805 HOH A 806 SITE 2 AC1 6 HOH A 830 HOH A 874 SITE 1 AC2 3 ARG B 91 HOH B 665 HOH B 800 SITE 1 AC3 3 ARG A 96 ARG B 276 HOH B 717 SITE 1 AC4 4 ASP B 109 ALA B 157 GLY B 158 LEU B 159 SITE 1 AC5 31 GLY A 22 THR A 23 TYR A 24 ASP A 50 SITE 2 AC5 31 TYR A 55 LYS A 84 HIS A 117 SER A 166 SITE 3 AC5 31 ASN A 167 GLN A 190 TYR A 216 SER A 217 SITE 4 AC5 31 ALA A 218 LEU A 219 GLY A 220 SER A 221 SITE 5 AC5 31 HIS A 222 LEU A 236 ALA A 253 ALA A 269 SITE 6 AC5 31 LYS A 270 SER A 271 TYR A 272 ARG A 276 SITE 7 AC5 31 GLN A 279 ASN A 280 EDO A 604 HOH A 693 SITE 8 AC5 31 HOH A 747 HOH A 772 HOH A 871 SITE 1 AC6 31 GLY B 22 THR B 23 TYR B 24 ASP B 50 SITE 2 AC6 31 TYR B 55 LYS B 84 HIS B 117 SER B 166 SITE 3 AC6 31 ASN B 167 GLN B 190 TYR B 216 SER B 217 SITE 4 AC6 31 ALA B 218 LEU B 219 SER B 221 HIS B 222 SITE 5 AC6 31 LEU B 236 ALA B 253 LYS B 270 SER B 271 SITE 6 AC6 31 TYR B 272 ASN B 273 ARG B 276 GLN B 279 SITE 7 AC6 31 ASN B 280 EDO B 603 HOH B 681 HOH B 715 SITE 8 AC6 31 HOH B 814 HOH B 835 HOH B 838 SITE 1 AC7 7 PRO B 92 ALA B 146 GLU B 149 ALA B 150 SITE 2 AC7 7 LYS B 153 HOH B 710 HOH B 859 SITE 1 AC8 7 GLN B 6 PRO B 17 VAL B 18 LEU B 19 SITE 2 AC8 7 GLY B 45 HIS B 47 PHE B 284 SITE 1 AC9 6 TYR B 24 HIS B 222 LEU B 306 NDP B 501 SITE 2 AC9 6 HOH B 715 HOH B 836 SITE 1 BC1 4 HIS A 222 NDP A 501 HOH A 781 HOH A 871 SITE 1 BC2 3 LYS A 123 ASP A 140 THR A 141 SITE 1 BC3 7 GLN A 6 PRO A 17 VAL A 18 LEU A 19 SITE 2 BC3 7 GLY A 45 HIS A 47 PHE A 284 CRYST1 143.840 143.840 204.250 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006952 0.004014 0.000000 0.00000 SCALE2 0.000000 0.008028 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004896 0.00000