data_2HDO # _entry.id 2HDO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2HDO pdb_00002hdo 10.2210/pdb2hdo/pdb RCSB RCSB038231 ? ? WWPDB D_1000038231 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-08-15 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 1 4 2023-01-25 6 'Structure model' 1 5 2024-10-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 6 'Structure model' 'Data collection' 8 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' database_2 3 5 'Structure model' struct_conn 4 5 'Structure model' struct_ref_seq_dif 5 5 'Structure model' struct_site 6 6 'Structure model' chem_comp_atom 7 6 'Structure model' chem_comp_bond 8 6 'Structure model' pdbx_entry_details 9 6 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.name' 3 5 'Structure model' '_database_2.pdbx_DOI' 4 5 'Structure model' '_database_2.pdbx_database_accession' 5 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 5 'Structure model' '_struct_ref_seq_dif.details' 7 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 8 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 9 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 2HDO _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2006-06-20 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 366929 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of putative phosphoglycolate phosphatase (np_784602.1) from Lactobacillus plantarum at 1.50 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Phosphoglycolate phosphatase' 23835.217 1 3.1.3.18 ? ? ? 2 non-polymer syn 'PHOSPHATE ION' 94.971 2 ? ? ? ? 3 water nat water 18.015 212 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)TYQAL(MSE)FDIDGTLTNSQPAYTTV(MSE)REVLATYGKPFSPAQAQKTFP(MSE)AAEQA(MSE)TELGIA ASEFDHFQAQYEDV(MSE)ASHYDQIELYPGITSLFEQLPSELRLGIVTSQRRNELESG(MSE)RSYPF(MSE)(MSE)R (MSE)AVTISADDTPKRKPDPLPLLTALEKVNVAPQNALFIGDSVSDEQTAQAANVDFGLAVWG(MSE)DPNADHQKVAH RFQKPLDILELFK ; _entity_poly.pdbx_seq_one_letter_code_can ;GMTYQALMFDIDGTLTNSQPAYTTVMREVLATYGKPFSPAQAQKTFPMAAEQAMTELGIAASEFDHFQAQYEDVMASHYD QIELYPGITSLFEQLPSELRLGIVTSQRRNELESGMRSYPFMMRMAVTISADDTPKRKPDPLPLLTALEKVNVAPQNALF IGDSVSDEQTAQAANVDFGLAVWGMDPNADHQKVAHRFQKPLDILELFK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 366929 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PHOSPHATE ION' PO4 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 THR n 1 4 TYR n 1 5 GLN n 1 6 ALA n 1 7 LEU n 1 8 MSE n 1 9 PHE n 1 10 ASP n 1 11 ILE n 1 12 ASP n 1 13 GLY n 1 14 THR n 1 15 LEU n 1 16 THR n 1 17 ASN n 1 18 SER n 1 19 GLN n 1 20 PRO n 1 21 ALA n 1 22 TYR n 1 23 THR n 1 24 THR n 1 25 VAL n 1 26 MSE n 1 27 ARG n 1 28 GLU n 1 29 VAL n 1 30 LEU n 1 31 ALA n 1 32 THR n 1 33 TYR n 1 34 GLY n 1 35 LYS n 1 36 PRO n 1 37 PHE n 1 38 SER n 1 39 PRO n 1 40 ALA n 1 41 GLN n 1 42 ALA n 1 43 GLN n 1 44 LYS n 1 45 THR n 1 46 PHE n 1 47 PRO n 1 48 MSE n 1 49 ALA n 1 50 ALA n 1 51 GLU n 1 52 GLN n 1 53 ALA n 1 54 MSE n 1 55 THR n 1 56 GLU n 1 57 LEU n 1 58 GLY n 1 59 ILE n 1 60 ALA n 1 61 ALA n 1 62 SER n 1 63 GLU n 1 64 PHE n 1 65 ASP n 1 66 HIS n 1 67 PHE n 1 68 GLN n 1 69 ALA n 1 70 GLN n 1 71 TYR n 1 72 GLU n 1 73 ASP n 1 74 VAL n 1 75 MSE n 1 76 ALA n 1 77 SER n 1 78 HIS n 1 79 TYR n 1 80 ASP n 1 81 GLN n 1 82 ILE n 1 83 GLU n 1 84 LEU n 1 85 TYR n 1 86 PRO n 1 87 GLY n 1 88 ILE n 1 89 THR n 1 90 SER n 1 91 LEU n 1 92 PHE n 1 93 GLU n 1 94 GLN n 1 95 LEU n 1 96 PRO n 1 97 SER n 1 98 GLU n 1 99 LEU n 1 100 ARG n 1 101 LEU n 1 102 GLY n 1 103 ILE n 1 104 VAL n 1 105 THR n 1 106 SER n 1 107 GLN n 1 108 ARG n 1 109 ARG n 1 110 ASN n 1 111 GLU n 1 112 LEU n 1 113 GLU n 1 114 SER n 1 115 GLY n 1 116 MSE n 1 117 ARG n 1 118 SER n 1 119 TYR n 1 120 PRO n 1 121 PHE n 1 122 MSE n 1 123 MSE n 1 124 ARG n 1 125 MSE n 1 126 ALA n 1 127 VAL n 1 128 THR n 1 129 ILE n 1 130 SER n 1 131 ALA n 1 132 ASP n 1 133 ASP n 1 134 THR n 1 135 PRO n 1 136 LYS n 1 137 ARG n 1 138 LYS n 1 139 PRO n 1 140 ASP n 1 141 PRO n 1 142 LEU n 1 143 PRO n 1 144 LEU n 1 145 LEU n 1 146 THR n 1 147 ALA n 1 148 LEU n 1 149 GLU n 1 150 LYS n 1 151 VAL n 1 152 ASN n 1 153 VAL n 1 154 ALA n 1 155 PRO n 1 156 GLN n 1 157 ASN n 1 158 ALA n 1 159 LEU n 1 160 PHE n 1 161 ILE n 1 162 GLY n 1 163 ASP n 1 164 SER n 1 165 VAL n 1 166 SER n 1 167 ASP n 1 168 GLU n 1 169 GLN n 1 170 THR n 1 171 ALA n 1 172 GLN n 1 173 ALA n 1 174 ALA n 1 175 ASN n 1 176 VAL n 1 177 ASP n 1 178 PHE n 1 179 GLY n 1 180 LEU n 1 181 ALA n 1 182 VAL n 1 183 TRP n 1 184 GLY n 1 185 MSE n 1 186 ASP n 1 187 PRO n 1 188 ASN n 1 189 ALA n 1 190 ASP n 1 191 HIS n 1 192 GLN n 1 193 LYS n 1 194 VAL n 1 195 ALA n 1 196 HIS n 1 197 ARG n 1 198 PHE n 1 199 GLN n 1 200 LYS n 1 201 PRO n 1 202 LEU n 1 203 ASP n 1 204 ILE n 1 205 LEU n 1 206 GLU n 1 207 LEU n 1 208 PHE n 1 209 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Lactobacillus _entity_src_gen.pdbx_gene_src_gene 'np_784602.1, gph1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Lactobacillus plantarum' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1590 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MSE 2 1 1 MSE MSE A . n A 1 3 THR 3 2 2 THR THR A . n A 1 4 TYR 4 3 3 TYR TYR A . n A 1 5 GLN 5 4 4 GLN GLN A . n A 1 6 ALA 6 5 5 ALA ALA A . n A 1 7 LEU 7 6 6 LEU LEU A . n A 1 8 MSE 8 7 7 MSE MSE A . n A 1 9 PHE 9 8 8 PHE PHE A . n A 1 10 ASP 10 9 9 ASP ASP A . n A 1 11 ILE 11 10 10 ILE ILE A . n A 1 12 ASP 12 11 11 ASP ASP A . n A 1 13 GLY 13 12 12 GLY GLY A . n A 1 14 THR 14 13 13 THR THR A . n A 1 15 LEU 15 14 14 LEU LEU A . n A 1 16 THR 16 15 15 THR THR A . n A 1 17 ASN 17 16 16 ASN ASN A . n A 1 18 SER 18 17 17 SER SER A . n A 1 19 GLN 19 18 18 GLN GLN A . n A 1 20 PRO 20 19 19 PRO PRO A . n A 1 21 ALA 21 20 20 ALA ALA A . n A 1 22 TYR 22 21 21 TYR TYR A . n A 1 23 THR 23 22 22 THR THR A . n A 1 24 THR 24 23 23 THR THR A . n A 1 25 VAL 25 24 24 VAL VAL A . n A 1 26 MSE 26 25 25 MSE MSE A . n A 1 27 ARG 27 26 26 ARG ARG A . n A 1 28 GLU 28 27 27 GLU GLU A . n A 1 29 VAL 29 28 28 VAL VAL A . n A 1 30 LEU 30 29 29 LEU LEU A . n A 1 31 ALA 31 30 30 ALA ALA A . n A 1 32 THR 32 31 31 THR THR A . n A 1 33 TYR 33 32 32 TYR TYR A . n A 1 34 GLY 34 33 33 GLY GLY A . n A 1 35 LYS 35 34 34 LYS LYS A . n A 1 36 PRO 36 35 35 PRO PRO A . n A 1 37 PHE 37 36 36 PHE PHE A . n A 1 38 SER 38 37 37 SER SER A . n A 1 39 PRO 39 38 38 PRO PRO A . n A 1 40 ALA 40 39 39 ALA ALA A . n A 1 41 GLN 41 40 40 GLN GLN A . n A 1 42 ALA 42 41 41 ALA ALA A . n A 1 43 GLN 43 42 42 GLN GLN A . n A 1 44 LYS 44 43 43 LYS LYS A . n A 1 45 THR 45 44 44 THR THR A . n A 1 46 PHE 46 45 45 PHE PHE A . n A 1 47 PRO 47 46 46 PRO PRO A . n A 1 48 MSE 48 47 47 MSE MSE A . n A 1 49 ALA 49 48 48 ALA ALA A . n A 1 50 ALA 50 49 49 ALA ALA A . n A 1 51 GLU 51 50 50 GLU GLU A . n A 1 52 GLN 52 51 51 GLN GLN A . n A 1 53 ALA 53 52 52 ALA ALA A . n A 1 54 MSE 54 53 53 MSE MSE A . n A 1 55 THR 55 54 54 THR THR A . n A 1 56 GLU 56 55 55 GLU GLU A . n A 1 57 LEU 57 56 56 LEU LEU A . n A 1 58 GLY 58 57 57 GLY GLY A . n A 1 59 ILE 59 58 58 ILE ILE A . n A 1 60 ALA 60 59 59 ALA ALA A . n A 1 61 ALA 61 60 60 ALA ALA A . n A 1 62 SER 62 61 61 SER SER A . n A 1 63 GLU 63 62 62 GLU GLU A . n A 1 64 PHE 64 63 63 PHE PHE A . n A 1 65 ASP 65 64 64 ASP ASP A . n A 1 66 HIS 66 65 65 HIS HIS A . n A 1 67 PHE 67 66 66 PHE PHE A . n A 1 68 GLN 68 67 67 GLN GLN A . n A 1 69 ALA 69 68 68 ALA ALA A . n A 1 70 GLN 70 69 69 GLN GLN A . n A 1 71 TYR 71 70 70 TYR TYR A . n A 1 72 GLU 72 71 71 GLU GLU A . n A 1 73 ASP 73 72 72 ASP ASP A . n A 1 74 VAL 74 73 73 VAL VAL A . n A 1 75 MSE 75 74 74 MSE MSE A . n A 1 76 ALA 76 75 75 ALA ALA A . n A 1 77 SER 77 76 76 SER SER A . n A 1 78 HIS 78 77 77 HIS HIS A . n A 1 79 TYR 79 78 78 TYR TYR A . n A 1 80 ASP 80 79 79 ASP ASP A . n A 1 81 GLN 81 80 80 GLN GLN A . n A 1 82 ILE 82 81 81 ILE ILE A . n A 1 83 GLU 83 82 82 GLU GLU A . n A 1 84 LEU 84 83 83 LEU LEU A . n A 1 85 TYR 85 84 84 TYR TYR A . n A 1 86 PRO 86 85 85 PRO PRO A . n A 1 87 GLY 87 86 86 GLY GLY A . n A 1 88 ILE 88 87 87 ILE ILE A . n A 1 89 THR 89 88 88 THR THR A . n A 1 90 SER 90 89 89 SER SER A . n A 1 91 LEU 91 90 90 LEU LEU A . n A 1 92 PHE 92 91 91 PHE PHE A . n A 1 93 GLU 93 92 92 GLU GLU A . n A 1 94 GLN 94 93 93 GLN GLN A . n A 1 95 LEU 95 94 94 LEU LEU A . n A 1 96 PRO 96 95 95 PRO PRO A . n A 1 97 SER 97 96 96 SER SER A . n A 1 98 GLU 98 97 97 GLU GLU A . n A 1 99 LEU 99 98 98 LEU LEU A . n A 1 100 ARG 100 99 99 ARG ARG A . n A 1 101 LEU 101 100 100 LEU LEU A . n A 1 102 GLY 102 101 101 GLY GLY A . n A 1 103 ILE 103 102 102 ILE ILE A . n A 1 104 VAL 104 103 103 VAL VAL A . n A 1 105 THR 105 104 104 THR THR A . n A 1 106 SER 106 105 105 SER SER A . n A 1 107 GLN 107 106 106 GLN GLN A . n A 1 108 ARG 108 107 107 ARG ARG A . n A 1 109 ARG 109 108 108 ARG ARG A . n A 1 110 ASN 110 109 109 ASN ASN A . n A 1 111 GLU 111 110 110 GLU GLU A . n A 1 112 LEU 112 111 111 LEU LEU A . n A 1 113 GLU 113 112 112 GLU GLU A . n A 1 114 SER 114 113 113 SER SER A . n A 1 115 GLY 115 114 114 GLY GLY A . n A 1 116 MSE 116 115 115 MSE MSE A . n A 1 117 ARG 117 116 116 ARG ARG A . n A 1 118 SER 118 117 117 SER SER A . n A 1 119 TYR 119 118 118 TYR TYR A . n A 1 120 PRO 120 119 119 PRO PRO A . n A 1 121 PHE 121 120 120 PHE PHE A . n A 1 122 MSE 122 121 121 MSE MSE A . n A 1 123 MSE 123 122 122 MSE MSE A . n A 1 124 ARG 124 123 123 ARG ARG A . n A 1 125 MSE 125 124 124 MSE MSE A . n A 1 126 ALA 126 125 125 ALA ALA A . n A 1 127 VAL 127 126 126 VAL VAL A . n A 1 128 THR 128 127 127 THR THR A . n A 1 129 ILE 129 128 128 ILE ILE A . n A 1 130 SER 130 129 129 SER SER A . n A 1 131 ALA 131 130 130 ALA ALA A . n A 1 132 ASP 132 131 131 ASP ASP A . n A 1 133 ASP 133 132 132 ASP ASP A . n A 1 134 THR 134 133 133 THR THR A . n A 1 135 PRO 135 134 134 PRO PRO A . n A 1 136 LYS 136 135 135 LYS LYS A . n A 1 137 ARG 137 136 136 ARG ARG A . n A 1 138 LYS 138 137 137 LYS LYS A . n A 1 139 PRO 139 138 138 PRO PRO A . n A 1 140 ASP 140 139 139 ASP ASP A . n A 1 141 PRO 141 140 140 PRO PRO A . n A 1 142 LEU 142 141 141 LEU LEU A . n A 1 143 PRO 143 142 142 PRO PRO A . n A 1 144 LEU 144 143 143 LEU LEU A . n A 1 145 LEU 145 144 144 LEU LEU A . n A 1 146 THR 146 145 145 THR THR A . n A 1 147 ALA 147 146 146 ALA ALA A . n A 1 148 LEU 148 147 147 LEU LEU A . n A 1 149 GLU 149 148 148 GLU GLU A . n A 1 150 LYS 150 149 149 LYS LYS A . n A 1 151 VAL 151 150 150 VAL VAL A . n A 1 152 ASN 152 151 151 ASN ASN A . n A 1 153 VAL 153 152 152 VAL VAL A . n A 1 154 ALA 154 153 153 ALA ALA A . n A 1 155 PRO 155 154 154 PRO PRO A . n A 1 156 GLN 156 155 155 GLN GLN A . n A 1 157 ASN 157 156 156 ASN ASN A . n A 1 158 ALA 158 157 157 ALA ALA A . n A 1 159 LEU 159 158 158 LEU LEU A . n A 1 160 PHE 160 159 159 PHE PHE A . n A 1 161 ILE 161 160 160 ILE ILE A . n A 1 162 GLY 162 161 161 GLY GLY A . n A 1 163 ASP 163 162 162 ASP ASP A . n A 1 164 SER 164 163 163 SER SER A . n A 1 165 VAL 165 164 164 VAL VAL A . n A 1 166 SER 166 165 165 SER SER A . n A 1 167 ASP 167 166 166 ASP ASP A . n A 1 168 GLU 168 167 167 GLU GLU A . n A 1 169 GLN 169 168 168 GLN GLN A . n A 1 170 THR 170 169 169 THR THR A . n A 1 171 ALA 171 170 170 ALA ALA A . n A 1 172 GLN 172 171 171 GLN GLN A . n A 1 173 ALA 173 172 172 ALA ALA A . n A 1 174 ALA 174 173 173 ALA ALA A . n A 1 175 ASN 175 174 174 ASN ASN A . n A 1 176 VAL 176 175 175 VAL VAL A . n A 1 177 ASP 177 176 176 ASP ASP A . n A 1 178 PHE 178 177 177 PHE PHE A . n A 1 179 GLY 179 178 178 GLY GLY A . n A 1 180 LEU 180 179 179 LEU LEU A . n A 1 181 ALA 181 180 180 ALA ALA A . n A 1 182 VAL 182 181 181 VAL VAL A . n A 1 183 TRP 183 182 182 TRP TRP A . n A 1 184 GLY 184 183 183 GLY GLY A . n A 1 185 MSE 185 184 184 MSE MSE A . n A 1 186 ASP 186 185 185 ASP ASP A . n A 1 187 PRO 187 186 186 PRO PRO A . n A 1 188 ASN 188 187 187 ASN ASN A . n A 1 189 ALA 189 188 188 ALA ALA A . n A 1 190 ASP 190 189 189 ASP ASP A . n A 1 191 HIS 191 190 190 HIS HIS A . n A 1 192 GLN 192 191 191 GLN GLN A . n A 1 193 LYS 193 192 192 LYS LYS A . n A 1 194 VAL 194 193 193 VAL VAL A . n A 1 195 ALA 195 194 194 ALA ALA A . n A 1 196 HIS 196 195 195 HIS HIS A . n A 1 197 ARG 197 196 196 ARG ARG A . n A 1 198 PHE 198 197 197 PHE PHE A . n A 1 199 GLN 199 198 198 GLN GLN A . n A 1 200 LYS 200 199 199 LYS LYS A . n A 1 201 PRO 201 200 200 PRO PRO A . n A 1 202 LEU 202 201 201 LEU LEU A . n A 1 203 ASP 203 202 202 ASP ASP A . n A 1 204 ILE 204 203 203 ILE ILE A . n A 1 205 LEU 205 204 204 LEU LEU A . n A 1 206 GLU 206 205 205 GLU GLU A . n A 1 207 LEU 207 206 206 LEU LEU A . n A 1 208 PHE 208 207 207 PHE PHE A . n A 1 209 LYS 209 208 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 1 209 1 PO4 PO4 A . C 2 PO4 1 210 2 PO4 PO4 A . D 3 HOH 1 211 3 HOH HOH A . D 3 HOH 2 212 4 HOH HOH A . D 3 HOH 3 213 5 HOH HOH A . D 3 HOH 4 214 6 HOH HOH A . D 3 HOH 5 215 7 HOH HOH A . D 3 HOH 6 216 8 HOH HOH A . D 3 HOH 7 217 9 HOH HOH A . D 3 HOH 8 218 10 HOH HOH A . D 3 HOH 9 219 11 HOH HOH A . D 3 HOH 10 220 12 HOH HOH A . D 3 HOH 11 221 13 HOH HOH A . D 3 HOH 12 222 14 HOH HOH A . D 3 HOH 13 223 15 HOH HOH A . D 3 HOH 14 224 16 HOH HOH A . D 3 HOH 15 225 17 HOH HOH A . D 3 HOH 16 226 18 HOH HOH A . D 3 HOH 17 227 19 HOH HOH A . D 3 HOH 18 228 20 HOH HOH A . D 3 HOH 19 229 21 HOH HOH A . D 3 HOH 20 230 22 HOH HOH A . D 3 HOH 21 231 23 HOH HOH A . D 3 HOH 22 232 24 HOH HOH A . D 3 HOH 23 233 25 HOH HOH A . D 3 HOH 24 234 26 HOH HOH A . D 3 HOH 25 235 27 HOH HOH A . D 3 HOH 26 236 28 HOH HOH A . D 3 HOH 27 237 29 HOH HOH A . D 3 HOH 28 238 30 HOH HOH A . D 3 HOH 29 239 31 HOH HOH A . D 3 HOH 30 240 32 HOH HOH A . D 3 HOH 31 241 33 HOH HOH A . D 3 HOH 32 242 34 HOH HOH A . D 3 HOH 33 243 35 HOH HOH A . D 3 HOH 34 244 36 HOH HOH A . D 3 HOH 35 245 37 HOH HOH A . D 3 HOH 36 246 38 HOH HOH A . D 3 HOH 37 247 39 HOH HOH A . D 3 HOH 38 248 40 HOH HOH A . D 3 HOH 39 249 41 HOH HOH A . D 3 HOH 40 250 42 HOH HOH A . D 3 HOH 41 251 43 HOH HOH A . D 3 HOH 42 252 44 HOH HOH A . D 3 HOH 43 253 45 HOH HOH A . D 3 HOH 44 254 46 HOH HOH A . D 3 HOH 45 255 47 HOH HOH A . D 3 HOH 46 256 48 HOH HOH A . D 3 HOH 47 257 49 HOH HOH A . D 3 HOH 48 258 50 HOH HOH A . D 3 HOH 49 259 51 HOH HOH A . D 3 HOH 50 260 52 HOH HOH A . D 3 HOH 51 261 53 HOH HOH A . D 3 HOH 52 262 54 HOH HOH A . D 3 HOH 53 263 55 HOH HOH A . D 3 HOH 54 264 56 HOH HOH A . D 3 HOH 55 265 57 HOH HOH A . D 3 HOH 56 266 58 HOH HOH A . D 3 HOH 57 267 59 HOH HOH A . D 3 HOH 58 268 60 HOH HOH A . D 3 HOH 59 269 61 HOH HOH A . D 3 HOH 60 270 62 HOH HOH A . D 3 HOH 61 271 63 HOH HOH A . D 3 HOH 62 272 64 HOH HOH A . D 3 HOH 63 273 65 HOH HOH A . D 3 HOH 64 274 66 HOH HOH A . D 3 HOH 65 275 67 HOH HOH A . D 3 HOH 66 276 68 HOH HOH A . D 3 HOH 67 277 69 HOH HOH A . D 3 HOH 68 278 70 HOH HOH A . D 3 HOH 69 279 71 HOH HOH A . D 3 HOH 70 280 72 HOH HOH A . D 3 HOH 71 281 73 HOH HOH A . D 3 HOH 72 282 74 HOH HOH A . D 3 HOH 73 283 75 HOH HOH A . D 3 HOH 74 284 76 HOH HOH A . D 3 HOH 75 285 77 HOH HOH A . D 3 HOH 76 286 78 HOH HOH A . D 3 HOH 77 287 79 HOH HOH A . D 3 HOH 78 288 80 HOH HOH A . D 3 HOH 79 289 81 HOH HOH A . D 3 HOH 80 290 82 HOH HOH A . D 3 HOH 81 291 83 HOH HOH A . D 3 HOH 82 292 84 HOH HOH A . D 3 HOH 83 293 85 HOH HOH A . D 3 HOH 84 294 86 HOH HOH A . D 3 HOH 85 295 87 HOH HOH A . D 3 HOH 86 296 88 HOH HOH A . D 3 HOH 87 297 89 HOH HOH A . D 3 HOH 88 298 90 HOH HOH A . D 3 HOH 89 299 91 HOH HOH A . D 3 HOH 90 300 92 HOH HOH A . D 3 HOH 91 301 93 HOH HOH A . D 3 HOH 92 302 94 HOH HOH A . D 3 HOH 93 303 95 HOH HOH A . D 3 HOH 94 304 96 HOH HOH A . D 3 HOH 95 305 97 HOH HOH A . D 3 HOH 96 306 98 HOH HOH A . D 3 HOH 97 307 99 HOH HOH A . D 3 HOH 98 308 100 HOH HOH A . D 3 HOH 99 309 101 HOH HOH A . D 3 HOH 100 310 102 HOH HOH A . D 3 HOH 101 311 103 HOH HOH A . D 3 HOH 102 312 104 HOH HOH A . D 3 HOH 103 313 105 HOH HOH A . D 3 HOH 104 314 106 HOH HOH A . D 3 HOH 105 315 107 HOH HOH A . D 3 HOH 106 316 108 HOH HOH A . D 3 HOH 107 317 109 HOH HOH A . D 3 HOH 108 318 110 HOH HOH A . D 3 HOH 109 319 111 HOH HOH A . D 3 HOH 110 320 112 HOH HOH A . D 3 HOH 111 321 113 HOH HOH A . D 3 HOH 112 322 114 HOH HOH A . D 3 HOH 113 323 115 HOH HOH A . D 3 HOH 114 324 116 HOH HOH A . D 3 HOH 115 325 117 HOH HOH A . D 3 HOH 116 326 118 HOH HOH A . D 3 HOH 117 327 119 HOH HOH A . D 3 HOH 118 328 120 HOH HOH A . D 3 HOH 119 329 121 HOH HOH A . D 3 HOH 120 330 122 HOH HOH A . D 3 HOH 121 331 123 HOH HOH A . D 3 HOH 122 332 124 HOH HOH A . D 3 HOH 123 333 125 HOH HOH A . D 3 HOH 124 334 126 HOH HOH A . D 3 HOH 125 335 127 HOH HOH A . D 3 HOH 126 336 128 HOH HOH A . D 3 HOH 127 337 129 HOH HOH A . D 3 HOH 128 338 130 HOH HOH A . D 3 HOH 129 339 131 HOH HOH A . D 3 HOH 130 340 132 HOH HOH A . D 3 HOH 131 341 133 HOH HOH A . D 3 HOH 132 342 134 HOH HOH A . D 3 HOH 133 343 135 HOH HOH A . D 3 HOH 134 344 136 HOH HOH A . D 3 HOH 135 345 137 HOH HOH A . D 3 HOH 136 346 138 HOH HOH A . D 3 HOH 137 347 139 HOH HOH A . D 3 HOH 138 348 140 HOH HOH A . D 3 HOH 139 349 141 HOH HOH A . D 3 HOH 140 350 142 HOH HOH A . D 3 HOH 141 351 143 HOH HOH A . D 3 HOH 142 352 144 HOH HOH A . D 3 HOH 143 353 145 HOH HOH A . D 3 HOH 144 354 146 HOH HOH A . D 3 HOH 145 355 147 HOH HOH A . D 3 HOH 146 356 148 HOH HOH A . D 3 HOH 147 357 149 HOH HOH A . D 3 HOH 148 358 150 HOH HOH A . D 3 HOH 149 359 151 HOH HOH A . D 3 HOH 150 360 152 HOH HOH A . D 3 HOH 151 361 153 HOH HOH A . D 3 HOH 152 362 154 HOH HOH A . D 3 HOH 153 363 155 HOH HOH A . D 3 HOH 154 364 156 HOH HOH A . D 3 HOH 155 365 157 HOH HOH A . D 3 HOH 156 366 158 HOH HOH A . D 3 HOH 157 367 159 HOH HOH A . D 3 HOH 158 368 160 HOH HOH A . D 3 HOH 159 369 161 HOH HOH A . D 3 HOH 160 370 162 HOH HOH A . D 3 HOH 161 371 163 HOH HOH A . D 3 HOH 162 372 164 HOH HOH A . D 3 HOH 163 373 165 HOH HOH A . D 3 HOH 164 374 166 HOH HOH A . D 3 HOH 165 375 167 HOH HOH A . D 3 HOH 166 376 168 HOH HOH A . D 3 HOH 167 377 169 HOH HOH A . D 3 HOH 168 378 170 HOH HOH A . D 3 HOH 169 379 171 HOH HOH A . D 3 HOH 170 380 172 HOH HOH A . D 3 HOH 171 381 173 HOH HOH A . D 3 HOH 172 382 174 HOH HOH A . D 3 HOH 173 383 175 HOH HOH A . D 3 HOH 174 384 176 HOH HOH A . D 3 HOH 175 385 177 HOH HOH A . D 3 HOH 176 386 178 HOH HOH A . D 3 HOH 177 387 179 HOH HOH A . D 3 HOH 178 388 180 HOH HOH A . D 3 HOH 179 389 181 HOH HOH A . D 3 HOH 180 390 182 HOH HOH A . D 3 HOH 181 391 183 HOH HOH A . D 3 HOH 182 392 184 HOH HOH A . D 3 HOH 183 393 185 HOH HOH A . D 3 HOH 184 394 186 HOH HOH A . D 3 HOH 185 395 187 HOH HOH A . D 3 HOH 186 396 188 HOH HOH A . D 3 HOH 187 397 189 HOH HOH A . D 3 HOH 188 398 190 HOH HOH A . D 3 HOH 189 399 191 HOH HOH A . D 3 HOH 190 400 192 HOH HOH A . D 3 HOH 191 401 193 HOH HOH A . D 3 HOH 192 402 194 HOH HOH A . D 3 HOH 193 403 195 HOH HOH A . D 3 HOH 194 404 196 HOH HOH A . D 3 HOH 195 405 197 HOH HOH A . D 3 HOH 196 406 198 HOH HOH A . D 3 HOH 197 407 199 HOH HOH A . D 3 HOH 198 408 200 HOH HOH A . D 3 HOH 199 409 201 HOH HOH A . D 3 HOH 200 410 202 HOH HOH A . D 3 HOH 201 411 203 HOH HOH A . D 3 HOH 202 412 204 HOH HOH A . D 3 HOH 203 413 205 HOH HOH A . D 3 HOH 204 414 206 HOH HOH A . D 3 HOH 205 415 207 HOH HOH A . D 3 HOH 206 416 208 HOH HOH A . D 3 HOH 207 417 209 HOH HOH A . D 3 HOH 208 418 210 HOH HOH A . D 3 HOH 209 419 211 HOH HOH A . D 3 HOH 210 420 212 HOH HOH A . D 3 HOH 211 421 213 HOH HOH A . D 3 HOH 212 422 214 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A MSE 1 ? CG ? A MSE 2 CG 2 1 Y 1 A MSE 1 ? SE ? A MSE 2 SE 3 1 Y 1 A MSE 1 ? CE ? A MSE 2 CE 4 1 Y 1 A GLN 42 ? OE1 ? A GLN 43 OE1 5 1 Y 1 A GLN 42 ? NE2 ? A GLN 43 NE2 6 1 Y 1 A LYS 43 ? CE ? A LYS 44 CE 7 1 Y 1 A LYS 43 ? NZ ? A LYS 44 NZ 8 1 Y 1 A GLU 50 ? OE1 ? A GLU 51 OE1 9 1 Y 1 A GLU 50 ? OE2 ? A GLU 51 OE2 10 1 Y 1 A GLU 62 ? OE1 ? A GLU 63 OE1 11 1 Y 1 A GLU 62 ? OE2 ? A GLU 63 OE2 12 1 Y 1 A GLU 71 ? CD ? A GLU 72 CD 13 1 Y 1 A GLU 71 ? OE1 ? A GLU 72 OE1 14 1 Y 1 A GLU 71 ? OE2 ? A GLU 72 OE2 15 1 Y 1 A ASP 79 ? CG ? A ASP 80 CG 16 1 Y 1 A ASP 79 ? OD1 ? A ASP 80 OD1 17 1 Y 1 A ASP 79 ? OD2 ? A ASP 80 OD2 18 1 Y 1 A GLU 82 ? OE1 ? A GLU 83 OE1 19 1 Y 1 A GLU 82 ? OE2 ? A GLU 83 OE2 20 1 Y 1 A ARG 107 ? CZ ? A ARG 108 CZ 21 1 Y 1 A ARG 107 ? NH1 ? A ARG 108 NH1 22 1 Y 1 A ARG 107 ? NH2 ? A ARG 108 NH2 23 1 Y 1 A LYS 135 ? CE ? A LYS 136 CE 24 1 Y 1 A LYS 135 ? NZ ? A LYS 136 NZ 25 1 Y 1 A ARG 136 ? NE ? A ARG 137 NE 26 1 Y 1 A ARG 136 ? CZ ? A ARG 137 CZ 27 1 Y 1 A ARG 136 ? NH1 ? A ARG 137 NH1 28 1 Y 1 A ARG 136 ? NH2 ? A ARG 137 NH2 29 1 Y 1 A GLU 148 ? CD ? A GLU 149 CD 30 1 Y 1 A GLU 148 ? OE1 ? A GLU 149 OE1 31 1 Y 1 A GLU 148 ? OE2 ? A GLU 149 OE2 32 1 Y 1 A LYS 149 ? CE ? A LYS 150 CE 33 1 Y 1 A LYS 149 ? NZ ? A LYS 150 NZ 34 1 Y 1 A GLN 171 ? CD ? A GLN 172 CD 35 1 Y 1 A GLN 171 ? OE1 ? A GLN 172 OE1 36 1 Y 1 A GLN 171 ? NE2 ? A GLN 172 NE2 37 1 Y 1 A GLN 191 ? CG ? A GLN 192 CG 38 1 Y 1 A GLN 191 ? CD ? A GLN 192 CD 39 1 Y 1 A GLN 191 ? OE1 ? A GLN 192 OE1 40 1 Y 1 A GLN 191 ? NE2 ? A GLN 192 NE2 41 1 Y 1 A LYS 192 ? CD ? A LYS 193 CD 42 1 Y 1 A LYS 192 ? CE ? A LYS 193 CE 43 1 Y 1 A LYS 192 ? NZ ? A LYS 193 NZ 44 1 Y 1 A LYS 199 ? CD ? A LYS 200 CD 45 1 Y 1 A LYS 199 ? CE ? A LYS 200 CE 46 1 Y 1 A LYS 199 ? NZ ? A LYS 200 NZ 47 1 Y 1 A GLU 205 ? OE1 ? A GLU 206 OE1 48 1 Y 1 A GLU 205 ? OE2 ? A GLU 206 OE2 # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 1 REFMAC 5.2.0005 ? ? 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 2 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/xscale_program.html ? ? 3 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 XDS . ? ? ? ? 'data reduction' ? ? ? 5 # _cell.entry_id 2HDO _cell.length_a 86.890 _cell.length_b 86.890 _cell.length_c 47.190 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2HDO _symmetry.Int_Tables_number 169 _symmetry.space_group_name_H-M 'P 61' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 2HDO # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 43.09 _exptl_crystal.density_Matthews 2.00 _exptl_crystal.description ? _exptl_crystal.density_meas ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP, NANODROP' _exptl_crystal_grow.pH 4.2 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '0.4M KH2PO3, 1.6M NaH2PO3, 0.1M Phosphate Citrate, pH 4.2, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.details 'Flat mirror (vertical focusing)' _diffrn_detector.pdbx_collection_date 2006-05-07 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Single crystal Si(111) bent monochromator (horizontal focusing)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.979224 1.0 2 0.978954 1.0 3 0.918370 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength_list '0.979224, 0.978954, 0.918370' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 2HDO _reflns.d_resolution_high 1.500 _reflns.d_resolution_low 29.424 _reflns.number_obs 32658 _reflns.pdbx_Rmerge_I_obs 0.143 _reflns.pdbx_netI_over_sigmaI 7.33 _reflns.percent_possible_obs 96.5 _reflns.B_iso_Wilson_estimate 22.126 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy 8.784 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.50 1.55 11737 ? ? 0.426 2.32 ? ? ? ? 4246 88.8 1 1 1.55 1.62 18629 ? ? 0.382 2.9 ? ? ? ? 6449 89.00 2 1 1.62 1.69 15873 ? ? 0.317 3.5 ? ? ? ? 5490 90.60 3 1 1.69 1.78 23105 ? ? 0.447 4.4 ? ? ? ? 5918 91.50 4 1 1.78 1.89 34402 ? ? 0.468 5.3 ? ? ? ? 5928 93.20 5 1 1.89 2.04 33794 ? ? 0.356 6.6 ? ? ? ? 5949 91.30 6 1 2.04 2.24 34138 ? ? 0.237 8.1 ? ? ? ? 6057 96.40 7 1 2.24 2.56 34882 ? ? 0.163 9.9 ? ? ? ? 6205 97.60 8 1 2.56 ? 36393 ? ? 0.113 12.8 ? ? ? ? 6372 98.20 9 1 # _refine.entry_id 2HDO _refine.ls_d_res_high 1.500 _refine.ls_d_res_low 29.424 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 95.210 _refine.ls_number_reflns_obs 30840 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1.HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3.DUE TO SEVERAL STRONG ICE RINGS, 1316 REFLECTIONS WITH INTENSITIES >=15 * (EXPECTED MEAN INTENSITY) BETWEEN 1.516-1.533, 1.890-1.930, 2.025-2.080, 2.210-2.289 ANGSTROMS WERE OMITTED FROM THE FINAL REFINEMENT. 4.TWO PHOSPHATE IONS FROM CRYSTALLIZATION BUFFER WERE MODELED. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.176 _refine.ls_R_factor_R_free 0.209 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1564 _refine.B_iso_mean 15.763 _refine.aniso_B[1][1] -0.650 _refine.aniso_B[2][2] -0.650 _refine.aniso_B[3][3] 0.980 _refine.aniso_B[1][2] -0.330 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.966 _refine.correlation_coeff_Fo_to_Fc_free 0.954 _refine.pdbx_overall_ESU_R 0.079 _refine.pdbx_overall_ESU_R_Free 0.081 _refine.overall_SU_ML 0.062 _refine.overall_SU_B 3.408 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_obs 0.178 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1574 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 212 _refine_hist.number_atoms_total 1796 _refine_hist.d_res_high 1.500 _refine_hist.d_res_low 29.424 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1665 0.014 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1489 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2278 1.478 1.964 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 3468 0.808 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 220 5.575 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 70 35.027 24.714 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 265 12.157 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 7 14.608 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 257 0.084 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1881 0.006 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 325 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 377 0.229 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 1473 0.173 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 835 0.183 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 940 0.086 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 142 0.144 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 5 0.088 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 31 0.120 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 12 0.163 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1093 1.984 3.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 420 0.486 3.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1727 2.765 5.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 643 4.578 8.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 546 6.504 11.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.504 _refine_ls_shell.d_res_low 1.543 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 70.310 _refine_ls_shell.number_reflns_R_work 1597 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.295 _refine_ls_shell.R_factor_R_free 0.368 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 84 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 1681 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2HDO _struct.title 'Crystal structure of putative phosphoglycolate phosphatase (np_784602.1) from Lactobacillus plantarum at 1.50 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;np_784602.1, putative phosphoglycolate phosphatase, Structural Genomics, PSI-2, Protein Structure Initiative, Joint Center for Structural Genomics, JCSG, HYDROLASE ; _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.entry_id 2HDO # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q88YA8_LACPL _struct_ref.pdbx_db_accession Q88YA8 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2HDO _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 209 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q88YA8 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 208 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 208 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2HDO GLY A 1 ? UNP Q88YA8 ? ? 'expression tag' 0 1 1 2HDO MSE A 2 ? UNP Q88YA8 MET 1 'modified residue' 1 2 1 2HDO MSE A 8 ? UNP Q88YA8 MET 7 'modified residue' 7 3 1 2HDO MSE A 26 ? UNP Q88YA8 MET 25 'modified residue' 25 4 1 2HDO MSE A 48 ? UNP Q88YA8 MET 47 'modified residue' 47 5 1 2HDO MSE A 54 ? UNP Q88YA8 MET 53 'modified residue' 53 6 1 2HDO MSE A 75 ? UNP Q88YA8 MET 74 'modified residue' 74 7 1 2HDO MSE A 116 ? UNP Q88YA8 MET 115 'modified residue' 115 8 1 2HDO MSE A 122 ? UNP Q88YA8 MET 121 'modified residue' 121 9 1 2HDO MSE A 123 ? UNP Q88YA8 MET 122 'modified residue' 122 10 1 2HDO MSE A 125 ? UNP Q88YA8 MET 124 'modified residue' 124 11 1 2HDO MSE A 185 ? UNP Q88YA8 MET 184 'modified residue' 184 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 18 ? THR A 32 ? SER A 17 THR A 31 1 ? 15 HELX_P HELX_P2 2 SER A 38 ? PHE A 46 ? SER A 37 PHE A 45 1 ? 9 HELX_P HELX_P3 3 ALA A 49 ? LEU A 57 ? ALA A 48 LEU A 56 1 ? 9 HELX_P HELX_P4 4 ALA A 60 ? SER A 62 ? ALA A 59 SER A 61 5 ? 3 HELX_P HELX_P5 5 GLU A 63 ? ALA A 76 ? GLU A 62 ALA A 75 1 ? 14 HELX_P HELX_P6 6 SER A 77 ? ILE A 82 ? SER A 76 ILE A 81 5 ? 6 HELX_P HELX_P7 7 GLY A 87 ? LEU A 95 ? GLY A 86 LEU A 94 1 ? 9 HELX_P HELX_P8 8 ARG A 108 ? ARG A 117 ? ARG A 107 ARG A 116 1 ? 10 HELX_P HELX_P9 9 TYR A 119 ? MSE A 123 ? TYR A 118 MSE A 122 5 ? 5 HELX_P HELX_P10 10 SER A 130 ? THR A 134 ? SER A 129 THR A 133 5 ? 5 HELX_P HELX_P11 11 PRO A 141 ? VAL A 151 ? PRO A 140 VAL A 150 1 ? 11 HELX_P HELX_P12 12 ALA A 154 ? GLN A 156 ? ALA A 153 GLN A 155 5 ? 3 HELX_P HELX_P13 13 SER A 164 ? ASN A 175 ? SER A 163 ASN A 174 1 ? 12 HELX_P HELX_P14 14 TRP A 183 ? MSE A 185 ? TRP A 182 MSE A 184 5 ? 3 HELX_P HELX_P15 15 ASN A 188 ? GLN A 192 ? ASN A 187 GLN A 191 5 ? 5 HELX_P HELX_P16 16 LYS A 200 ? PHE A 208 ? LYS A 199 PHE A 207 5 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A MSE 2 C ? ? ? 1_555 A THR 3 N ? ? A MSE 1 A THR 2 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale2 covale both ? A LEU 7 C ? ? ? 1_555 A MSE 8 N ? ? A LEU 6 A MSE 7 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale3 covale both ? A MSE 8 C ? ? ? 1_555 A PHE 9 N ? ? A MSE 7 A PHE 8 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale4 covale both ? A VAL 25 C ? ? ? 1_555 A MSE 26 N ? ? A VAL 24 A MSE 25 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale5 covale both ? A MSE 26 C ? ? ? 1_555 A ARG 27 N ? ? A MSE 25 A ARG 26 1_555 ? ? ? ? ? ? ? 1.314 ? ? covale6 covale both ? A PRO 47 C ? ? ? 1_555 A MSE 48 N ? ? A PRO 46 A MSE 47 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale7 covale both ? A MSE 48 C ? ? ? 1_555 A ALA 49 N ? ? A MSE 47 A ALA 48 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale8 covale both ? A ALA 53 C ? ? ? 1_555 A MSE 54 N ? ? A ALA 52 A MSE 53 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale9 covale both ? A MSE 54 C ? ? ? 1_555 A THR 55 N ? ? A MSE 53 A THR 54 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale10 covale both ? A VAL 74 C ? ? ? 1_555 A MSE 75 N ? ? A VAL 73 A MSE 74 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale11 covale both ? A MSE 75 C ? ? ? 1_555 A ALA 76 N ? ? A MSE 74 A ALA 75 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale12 covale both ? A GLY 115 C ? ? ? 1_555 A MSE 116 N ? ? A GLY 114 A MSE 115 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale13 covale both ? A MSE 116 C ? ? ? 1_555 A ARG 117 N ? ? A MSE 115 A ARG 116 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale14 covale both ? A PHE 121 C ? ? ? 1_555 A MSE 122 N ? ? A PHE 120 A MSE 121 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale15 covale both ? A MSE 122 C ? ? ? 1_555 A MSE 123 N B ? A MSE 121 A MSE 122 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale16 covale both ? A MSE 122 C ? ? ? 1_555 A MSE 123 N A ? A MSE 121 A MSE 122 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale17 covale both ? A MSE 123 C B ? ? 1_555 A ARG 124 N ? ? A MSE 122 A ARG 123 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale18 covale both ? A MSE 123 C A ? ? 1_555 A ARG 124 N ? ? A MSE 122 A ARG 123 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale19 covale both ? A ARG 124 C ? ? ? 1_555 A MSE 125 N ? ? A ARG 123 A MSE 124 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale20 covale both ? A MSE 125 C ? ? ? 1_555 A ALA 126 N ? ? A MSE 124 A ALA 125 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale21 covale both ? A GLY 184 C ? ? ? 1_555 A MSE 185 N ? ? A GLY 183 A MSE 184 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale22 covale both ? A MSE 185 C ? ? ? 1_555 A ASP 186 N ? ? A MSE 184 A ASP 185 1_555 ? ? ? ? ? ? ? 1.328 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 MSE A 2 ? . . . . MSE A 1 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 2 MSE A 8 ? . . . . MSE A 7 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 3 MSE A 26 ? . . . . MSE A 25 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 4 MSE A 48 ? . . . . MSE A 47 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 5 MSE A 54 ? . . . . MSE A 53 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 6 MSE A 75 ? . . . . MSE A 74 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 7 MSE A 116 ? . . . . MSE A 115 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 8 MSE A 122 ? . . . . MSE A 121 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 9 MSE A 123 A . . . . MSE A 122 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 10 MSE A 123 B . . . . MSE A 122 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 11 MSE A 125 ? . . . . MSE A 124 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 12 MSE A 185 ? . . . . MSE A 184 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 138 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 137 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 139 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 138 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 6.33 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 MSE A 125 ? ILE A 129 ? MSE A 124 ILE A 128 A 2 ARG A 100 ? VAL A 104 ? ARG A 99 VAL A 103 A 3 ALA A 6 ? PHE A 9 ? ALA A 5 PHE A 8 A 4 ALA A 158 ? GLY A 162 ? ALA A 157 GLY A 161 A 5 ASP A 177 ? ALA A 181 ? ASP A 176 ALA A 180 A 6 HIS A 196 ? PHE A 198 ? HIS A 195 PHE A 197 B 1 THR A 16 ? ASN A 17 ? THR A 15 ASN A 16 B 2 GLU A 83 ? LEU A 84 ? GLU A 82 LEU A 83 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ALA A 126 ? O ALA A 125 N LEU A 101 ? N LEU A 100 A 2 3 O GLY A 102 ? O GLY A 101 N PHE A 9 ? N PHE A 8 A 3 4 N MSE A 8 ? N MSE A 7 O ILE A 161 ? O ILE A 160 A 4 5 N PHE A 160 ? N PHE A 159 O GLY A 179 ? O GLY A 178 A 5 6 N LEU A 180 ? N LEU A 179 O PHE A 198 ? O PHE A 197 B 1 2 N ASN A 17 ? N ASN A 16 O GLU A 83 ? O GLU A 82 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A PO4 209 ? 8 'BINDING SITE FOR RESIDUE PO4 A 209' AC2 Software A PO4 210 ? 7 'BINDING SITE FOR RESIDUE PO4 A 210' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 ASP A 10 ? ASP A 9 . ? 1_555 ? 2 AC1 8 ILE A 11 ? ILE A 10 . ? 1_555 ? 3 AC1 8 ASP A 12 ? ASP A 11 . ? 1_555 ? 4 AC1 8 THR A 105 ? THR A 104 . ? 1_555 ? 5 AC1 8 SER A 106 ? SER A 105 . ? 1_555 ? 6 AC1 8 LYS A 138 ? LYS A 137 . ? 1_555 ? 7 AC1 8 HOH D . ? HOH A 411 . ? 1_555 ? 8 AC1 8 HOH D . ? HOH A 415 . ? 1_555 ? 9 AC2 7 GLU A 28 ? GLU A 27 . ? 1_555 ? 10 AC2 7 MSE A 48 ? MSE A 47 . ? 5_554 ? 11 AC2 7 GLN A 52 ? GLN A 51 . ? 5_554 ? 12 AC2 7 GLU A 56 ? GLU A 55 . ? 5_554 ? 13 AC2 7 SER A 77 ? SER A 76 . ? 1_555 ? 14 AC2 7 HIS A 78 ? HIS A 77 . ? 1_555 ? 15 AC2 7 HOH D . ? HOH A 416 . ? 5_554 ? # _pdbx_entry_details.entry_id 2HDO _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 2 ? ? -125.11 -165.93 2 1 ILE A 10 ? ? -98.67 -61.79 3 1 THR A 13 ? ? -130.09 -63.46 4 1 ASP A 162 ? ? -146.59 46.23 # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 2 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 8 A MSE 7 ? MET SELENOMETHIONINE 3 A MSE 26 A MSE 25 ? MET SELENOMETHIONINE 4 A MSE 48 A MSE 47 ? MET SELENOMETHIONINE 5 A MSE 54 A MSE 53 ? MET SELENOMETHIONINE 6 A MSE 75 A MSE 74 ? MET SELENOMETHIONINE 7 A MSE 116 A MSE 115 ? MET SELENOMETHIONINE 8 A MSE 122 A MSE 121 ? MET SELENOMETHIONINE 9 A MSE 123 A MSE 122 ? MET SELENOMETHIONINE 10 A MSE 125 A MSE 124 ? MET SELENOMETHIONINE 11 A MSE 185 A MSE 184 ? MET SELENOMETHIONINE # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 24.3027 _pdbx_refine_tls.origin_y 21.9784 _pdbx_refine_tls.origin_z 22.2181 _pdbx_refine_tls.T[1][1] -0.0187 _pdbx_refine_tls.T[2][2] -0.0232 _pdbx_refine_tls.T[3][3] -0.0273 _pdbx_refine_tls.T[1][2] 0.0106 _pdbx_refine_tls.T[1][3] 0.0093 _pdbx_refine_tls.T[2][3] 0.0104 _pdbx_refine_tls.L[1][1] 0.6919 _pdbx_refine_tls.L[2][2] 0.7872 _pdbx_refine_tls.L[3][3] 0.7208 _pdbx_refine_tls.L[1][2] -0.1209 _pdbx_refine_tls.L[1][3] 0.1494 _pdbx_refine_tls.L[2][3] 0.5101 _pdbx_refine_tls.S[1][1] -0.0157 _pdbx_refine_tls.S[2][2] 0.0182 _pdbx_refine_tls.S[3][3] -0.0025 _pdbx_refine_tls.S[1][2] 0.0103 _pdbx_refine_tls.S[1][3] 0.0008 _pdbx_refine_tls.S[2][3] 0.0121 _pdbx_refine_tls.S[2][1] 0.0465 _pdbx_refine_tls.S[3][1] 0.0598 _pdbx_refine_tls.S[3][2] 0.0418 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 2 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 208 _pdbx_refine_tls_group.selection ALL _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 1 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 207 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # _phasing.method MAD # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;SEQUENCE THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A LYS 208 ? A LYS 209 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 ILE N N N N 147 ILE CA C N S 148 ILE C C N N 149 ILE O O N N 150 ILE CB C N S 151 ILE CG1 C N N 152 ILE CG2 C N N 153 ILE CD1 C N N 154 ILE OXT O N N 155 ILE H H N N 156 ILE H2 H N N 157 ILE HA H N N 158 ILE HB H N N 159 ILE HG12 H N N 160 ILE HG13 H N N 161 ILE HG21 H N N 162 ILE HG22 H N N 163 ILE HG23 H N N 164 ILE HD11 H N N 165 ILE HD12 H N N 166 ILE HD13 H N N 167 ILE HXT H N N 168 LEU N N N N 169 LEU CA C N S 170 LEU C C N N 171 LEU O O N N 172 LEU CB C N N 173 LEU CG C N N 174 LEU CD1 C N N 175 LEU CD2 C N N 176 LEU OXT O N N 177 LEU H H N N 178 LEU H2 H N N 179 LEU HA H N N 180 LEU HB2 H N N 181 LEU HB3 H N N 182 LEU HG H N N 183 LEU HD11 H N N 184 LEU HD12 H N N 185 LEU HD13 H N N 186 LEU HD21 H N N 187 LEU HD22 H N N 188 LEU HD23 H N N 189 LEU HXT H N N 190 LYS N N N N 191 LYS CA C N S 192 LYS C C N N 193 LYS O O N N 194 LYS CB C N N 195 LYS CG C N N 196 LYS CD C N N 197 LYS CE C N N 198 LYS NZ N N N 199 LYS OXT O N N 200 LYS H H N N 201 LYS H2 H N N 202 LYS HA H N N 203 LYS HB2 H N N 204 LYS HB3 H N N 205 LYS HG2 H N N 206 LYS HG3 H N N 207 LYS HD2 H N N 208 LYS HD3 H N N 209 LYS HE2 H N N 210 LYS HE3 H N N 211 LYS HZ1 H N N 212 LYS HZ2 H N N 213 LYS HZ3 H N N 214 LYS HXT H N N 215 MET N N N N 216 MET CA C N S 217 MET C C N N 218 MET O O N N 219 MET CB C N N 220 MET CG C N N 221 MET SD S N N 222 MET CE C N N 223 MET OXT O N N 224 MET H H N N 225 MET H2 H N N 226 MET HA H N N 227 MET HB2 H N N 228 MET HB3 H N N 229 MET HG2 H N N 230 MET HG3 H N N 231 MET HE1 H N N 232 MET HE2 H N N 233 MET HE3 H N N 234 MET HXT H N N 235 MSE N N N N 236 MSE CA C N S 237 MSE C C N N 238 MSE O O N N 239 MSE OXT O N N 240 MSE CB C N N 241 MSE CG C N N 242 MSE SE SE N N 243 MSE CE C N N 244 MSE H H N N 245 MSE H2 H N N 246 MSE HA H N N 247 MSE HXT H N N 248 MSE HB2 H N N 249 MSE HB3 H N N 250 MSE HG2 H N N 251 MSE HG3 H N N 252 MSE HE1 H N N 253 MSE HE2 H N N 254 MSE HE3 H N N 255 PHE N N N N 256 PHE CA C N S 257 PHE C C N N 258 PHE O O N N 259 PHE CB C N N 260 PHE CG C Y N 261 PHE CD1 C Y N 262 PHE CD2 C Y N 263 PHE CE1 C Y N 264 PHE CE2 C Y N 265 PHE CZ C Y N 266 PHE OXT O N N 267 PHE H H N N 268 PHE H2 H N N 269 PHE HA H N N 270 PHE HB2 H N N 271 PHE HB3 H N N 272 PHE HD1 H N N 273 PHE HD2 H N N 274 PHE HE1 H N N 275 PHE HE2 H N N 276 PHE HZ H N N 277 PHE HXT H N N 278 PO4 P P N N 279 PO4 O1 O N N 280 PO4 O2 O N N 281 PO4 O3 O N N 282 PO4 O4 O N N 283 PRO N N N N 284 PRO CA C N S 285 PRO C C N N 286 PRO O O N N 287 PRO CB C N N 288 PRO CG C N N 289 PRO CD C N N 290 PRO OXT O N N 291 PRO H H N N 292 PRO HA H N N 293 PRO HB2 H N N 294 PRO HB3 H N N 295 PRO HG2 H N N 296 PRO HG3 H N N 297 PRO HD2 H N N 298 PRO HD3 H N N 299 PRO HXT H N N 300 SER N N N N 301 SER CA C N S 302 SER C C N N 303 SER O O N N 304 SER CB C N N 305 SER OG O N N 306 SER OXT O N N 307 SER H H N N 308 SER H2 H N N 309 SER HA H N N 310 SER HB2 H N N 311 SER HB3 H N N 312 SER HG H N N 313 SER HXT H N N 314 THR N N N N 315 THR CA C N S 316 THR C C N N 317 THR O O N N 318 THR CB C N R 319 THR OG1 O N N 320 THR CG2 C N N 321 THR OXT O N N 322 THR H H N N 323 THR H2 H N N 324 THR HA H N N 325 THR HB H N N 326 THR HG1 H N N 327 THR HG21 H N N 328 THR HG22 H N N 329 THR HG23 H N N 330 THR HXT H N N 331 TRP N N N N 332 TRP CA C N S 333 TRP C C N N 334 TRP O O N N 335 TRP CB C N N 336 TRP CG C Y N 337 TRP CD1 C Y N 338 TRP CD2 C Y N 339 TRP NE1 N Y N 340 TRP CE2 C Y N 341 TRP CE3 C Y N 342 TRP CZ2 C Y N 343 TRP CZ3 C Y N 344 TRP CH2 C Y N 345 TRP OXT O N N 346 TRP H H N N 347 TRP H2 H N N 348 TRP HA H N N 349 TRP HB2 H N N 350 TRP HB3 H N N 351 TRP HD1 H N N 352 TRP HE1 H N N 353 TRP HE3 H N N 354 TRP HZ2 H N N 355 TRP HZ3 H N N 356 TRP HH2 H N N 357 TRP HXT H N N 358 TYR N N N N 359 TYR CA C N S 360 TYR C C N N 361 TYR O O N N 362 TYR CB C N N 363 TYR CG C Y N 364 TYR CD1 C Y N 365 TYR CD2 C Y N 366 TYR CE1 C Y N 367 TYR CE2 C Y N 368 TYR CZ C Y N 369 TYR OH O N N 370 TYR OXT O N N 371 TYR H H N N 372 TYR H2 H N N 373 TYR HA H N N 374 TYR HB2 H N N 375 TYR HB3 H N N 376 TYR HD1 H N N 377 TYR HD2 H N N 378 TYR HE1 H N N 379 TYR HE2 H N N 380 TYR HH H N N 381 TYR HXT H N N 382 VAL N N N N 383 VAL CA C N S 384 VAL C C N N 385 VAL O O N N 386 VAL CB C N N 387 VAL CG1 C N N 388 VAL CG2 C N N 389 VAL OXT O N N 390 VAL H H N N 391 VAL H2 H N N 392 VAL HA H N N 393 VAL HB H N N 394 VAL HG11 H N N 395 VAL HG12 H N N 396 VAL HG13 H N N 397 VAL HG21 H N N 398 VAL HG22 H N N 399 VAL HG23 H N N 400 VAL HXT H N N 401 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 HOH O H1 sing N N 137 HOH O H2 sing N N 138 ILE N CA sing N N 139 ILE N H sing N N 140 ILE N H2 sing N N 141 ILE CA C sing N N 142 ILE CA CB sing N N 143 ILE CA HA sing N N 144 ILE C O doub N N 145 ILE C OXT sing N N 146 ILE CB CG1 sing N N 147 ILE CB CG2 sing N N 148 ILE CB HB sing N N 149 ILE CG1 CD1 sing N N 150 ILE CG1 HG12 sing N N 151 ILE CG1 HG13 sing N N 152 ILE CG2 HG21 sing N N 153 ILE CG2 HG22 sing N N 154 ILE CG2 HG23 sing N N 155 ILE CD1 HD11 sing N N 156 ILE CD1 HD12 sing N N 157 ILE CD1 HD13 sing N N 158 ILE OXT HXT sing N N 159 LEU N CA sing N N 160 LEU N H sing N N 161 LEU N H2 sing N N 162 LEU CA C sing N N 163 LEU CA CB sing N N 164 LEU CA HA sing N N 165 LEU C O doub N N 166 LEU C OXT sing N N 167 LEU CB CG sing N N 168 LEU CB HB2 sing N N 169 LEU CB HB3 sing N N 170 LEU CG CD1 sing N N 171 LEU CG CD2 sing N N 172 LEU CG HG sing N N 173 LEU CD1 HD11 sing N N 174 LEU CD1 HD12 sing N N 175 LEU CD1 HD13 sing N N 176 LEU CD2 HD21 sing N N 177 LEU CD2 HD22 sing N N 178 LEU CD2 HD23 sing N N 179 LEU OXT HXT sing N N 180 LYS N CA sing N N 181 LYS N H sing N N 182 LYS N H2 sing N N 183 LYS CA C sing N N 184 LYS CA CB sing N N 185 LYS CA HA sing N N 186 LYS C O doub N N 187 LYS C OXT sing N N 188 LYS CB CG sing N N 189 LYS CB HB2 sing N N 190 LYS CB HB3 sing N N 191 LYS CG CD sing N N 192 LYS CG HG2 sing N N 193 LYS CG HG3 sing N N 194 LYS CD CE sing N N 195 LYS CD HD2 sing N N 196 LYS CD HD3 sing N N 197 LYS CE NZ sing N N 198 LYS CE HE2 sing N N 199 LYS CE HE3 sing N N 200 LYS NZ HZ1 sing N N 201 LYS NZ HZ2 sing N N 202 LYS NZ HZ3 sing N N 203 LYS OXT HXT sing N N 204 MET N CA sing N N 205 MET N H sing N N 206 MET N H2 sing N N 207 MET CA C sing N N 208 MET CA CB sing N N 209 MET CA HA sing N N 210 MET C O doub N N 211 MET C OXT sing N N 212 MET CB CG sing N N 213 MET CB HB2 sing N N 214 MET CB HB3 sing N N 215 MET CG SD sing N N 216 MET CG HG2 sing N N 217 MET CG HG3 sing N N 218 MET SD CE sing N N 219 MET CE HE1 sing N N 220 MET CE HE2 sing N N 221 MET CE HE3 sing N N 222 MET OXT HXT sing N N 223 MSE N CA sing N N 224 MSE N H sing N N 225 MSE N H2 sing N N 226 MSE CA C sing N N 227 MSE CA CB sing N N 228 MSE CA HA sing N N 229 MSE C O doub N N 230 MSE C OXT sing N N 231 MSE OXT HXT sing N N 232 MSE CB CG sing N N 233 MSE CB HB2 sing N N 234 MSE CB HB3 sing N N 235 MSE CG SE sing N N 236 MSE CG HG2 sing N N 237 MSE CG HG3 sing N N 238 MSE SE CE sing N N 239 MSE CE HE1 sing N N 240 MSE CE HE2 sing N N 241 MSE CE HE3 sing N N 242 PHE N CA sing N N 243 PHE N H sing N N 244 PHE N H2 sing N N 245 PHE CA C sing N N 246 PHE CA CB sing N N 247 PHE CA HA sing N N 248 PHE C O doub N N 249 PHE C OXT sing N N 250 PHE CB CG sing N N 251 PHE CB HB2 sing N N 252 PHE CB HB3 sing N N 253 PHE CG CD1 doub Y N 254 PHE CG CD2 sing Y N 255 PHE CD1 CE1 sing Y N 256 PHE CD1 HD1 sing N N 257 PHE CD2 CE2 doub Y N 258 PHE CD2 HD2 sing N N 259 PHE CE1 CZ doub Y N 260 PHE CE1 HE1 sing N N 261 PHE CE2 CZ sing Y N 262 PHE CE2 HE2 sing N N 263 PHE CZ HZ sing N N 264 PHE OXT HXT sing N N 265 PO4 P O1 doub N N 266 PO4 P O2 sing N N 267 PO4 P O3 sing N N 268 PO4 P O4 sing N N 269 PRO N CA sing N N 270 PRO N CD sing N N 271 PRO N H sing N N 272 PRO CA C sing N N 273 PRO CA CB sing N N 274 PRO CA HA sing N N 275 PRO C O doub N N 276 PRO C OXT sing N N 277 PRO CB CG sing N N 278 PRO CB HB2 sing N N 279 PRO CB HB3 sing N N 280 PRO CG CD sing N N 281 PRO CG HG2 sing N N 282 PRO CG HG3 sing N N 283 PRO CD HD2 sing N N 284 PRO CD HD3 sing N N 285 PRO OXT HXT sing N N 286 SER N CA sing N N 287 SER N H sing N N 288 SER N H2 sing N N 289 SER CA C sing N N 290 SER CA CB sing N N 291 SER CA HA sing N N 292 SER C O doub N N 293 SER C OXT sing N N 294 SER CB OG sing N N 295 SER CB HB2 sing N N 296 SER CB HB3 sing N N 297 SER OG HG sing N N 298 SER OXT HXT sing N N 299 THR N CA sing N N 300 THR N H sing N N 301 THR N H2 sing N N 302 THR CA C sing N N 303 THR CA CB sing N N 304 THR CA HA sing N N 305 THR C O doub N N 306 THR C OXT sing N N 307 THR CB OG1 sing N N 308 THR CB CG2 sing N N 309 THR CB HB sing N N 310 THR OG1 HG1 sing N N 311 THR CG2 HG21 sing N N 312 THR CG2 HG22 sing N N 313 THR CG2 HG23 sing N N 314 THR OXT HXT sing N N 315 TRP N CA sing N N 316 TRP N H sing N N 317 TRP N H2 sing N N 318 TRP CA C sing N N 319 TRP CA CB sing N N 320 TRP CA HA sing N N 321 TRP C O doub N N 322 TRP C OXT sing N N 323 TRP CB CG sing N N 324 TRP CB HB2 sing N N 325 TRP CB HB3 sing N N 326 TRP CG CD1 doub Y N 327 TRP CG CD2 sing Y N 328 TRP CD1 NE1 sing Y N 329 TRP CD1 HD1 sing N N 330 TRP CD2 CE2 doub Y N 331 TRP CD2 CE3 sing Y N 332 TRP NE1 CE2 sing Y N 333 TRP NE1 HE1 sing N N 334 TRP CE2 CZ2 sing Y N 335 TRP CE3 CZ3 doub Y N 336 TRP CE3 HE3 sing N N 337 TRP CZ2 CH2 doub Y N 338 TRP CZ2 HZ2 sing N N 339 TRP CZ3 CH2 sing Y N 340 TRP CZ3 HZ3 sing N N 341 TRP CH2 HH2 sing N N 342 TRP OXT HXT sing N N 343 TYR N CA sing N N 344 TYR N H sing N N 345 TYR N H2 sing N N 346 TYR CA C sing N N 347 TYR CA CB sing N N 348 TYR CA HA sing N N 349 TYR C O doub N N 350 TYR C OXT sing N N 351 TYR CB CG sing N N 352 TYR CB HB2 sing N N 353 TYR CB HB3 sing N N 354 TYR CG CD1 doub Y N 355 TYR CG CD2 sing Y N 356 TYR CD1 CE1 sing Y N 357 TYR CD1 HD1 sing N N 358 TYR CD2 CE2 doub Y N 359 TYR CD2 HD2 sing N N 360 TYR CE1 CZ doub Y N 361 TYR CE1 HE1 sing N N 362 TYR CE2 CZ sing Y N 363 TYR CE2 HE2 sing N N 364 TYR CZ OH sing N N 365 TYR OH HH sing N N 366 TYR OXT HXT sing N N 367 VAL N CA sing N N 368 VAL N H sing N N 369 VAL N H2 sing N N 370 VAL CA C sing N N 371 VAL CA CB sing N N 372 VAL CA HA sing N N 373 VAL C O doub N N 374 VAL C OXT sing N N 375 VAL CB CG1 sing N N 376 VAL CB CG2 sing N N 377 VAL CB HB sing N N 378 VAL CG1 HG11 sing N N 379 VAL CG1 HG12 sing N N 380 VAL CG1 HG13 sing N N 381 VAL CG2 HG21 sing N N 382 VAL CG2 HG22 sing N N 383 VAL CG2 HG23 sing N N 384 VAL OXT HXT sing N N 385 # _atom_sites.entry_id 2HDO _atom_sites.fract_transf_matrix[1][1] 0.01151 _atom_sites.fract_transf_matrix[1][2] 0.00665 _atom_sites.fract_transf_matrix[1][3] 0.00000 _atom_sites.fract_transf_matrix[2][1] 0.00000 _atom_sites.fract_transf_matrix[2][2] 0.01329 _atom_sites.fract_transf_matrix[2][3] 0.00000 _atom_sites.fract_transf_matrix[3][1] 0.00000 _atom_sites.fract_transf_matrix[3][2] 0.00000 _atom_sites.fract_transf_matrix[3][3] 0.02119 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P SE # loop_