HEADER IMMUNE SYSTEM/DNA 21-JUN-06 2HEO TITLE GENERAL STRUCTURE-BASED APPROACH TO THE DESIGN OF PROTEIN LIGANDS: TITLE 2 APPLICATION TO THE DESIGN OF KV1.2 POTASSIUM CHANNEL BLOCKERS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*TP*CP*GP*CP*GP*CP*G)-3'; COMPND 3 CHAIN: B, E; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: Z-DNA BINDING PROTEIN 1; COMPND 7 CHAIN: A, D; COMPND 8 FRAGMENT: N-TERMINAL WINGED-HELIX DOMAIN ZALPHA; COMPND 9 SYNONYM: TUMOR STROMA AND ACTIVATED MACROPHAGE PROTEIN DLM-1; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 5 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 6 ORGANISM_TAXID: 10090; SOURCE 7 GENE: ZBP1; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21-DE3; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS PROTEIN DLM1-Z-DNA COMPLEX, IMMUNE SYSTEM-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.MAGIS,S.GASPARINI,J.B.CHARBONNIER,E.STURA,M.H.LE DU,A.MENEZ, AUTHOR 2 P.CUNIASSE REVDAT 6 30-AUG-23 2HEO 1 REMARK REVDAT 5 20-OCT-21 2HEO 1 SEQADV REVDAT 4 13-JUL-11 2HEO 1 VERSN REVDAT 3 24-FEB-09 2HEO 1 VERSN REVDAT 2 14-AUG-07 2HEO 1 JRNL REVDAT 1 21-NOV-06 2HEO 0 JRNL AUTH C.MAGIS,D.GASPARINI,A.LECOQ,M.H.LE DU,E.STURA, JRNL AUTH 2 J.B.CHARBONNIER,G.MOURIER,J.C.BOULAIN,L.PARDO,A.CARUANA, JRNL AUTH 3 A.JOLY,M.LEFRANC,M.MASELLA,A.MENEZ,P.CUNIASSE JRNL TITL STRUCTURE-BASED SECONDARY STRUCTURE-INDEPENDENT APPROACH TO JRNL TITL 2 DESIGN PROTEIN LIGANDS: APPLICATION TO THE DESIGN OF KV1.2 JRNL TITL 3 POTASSIUM CHANNEL BLOCKERS. JRNL REF J.AM.CHEM.SOC. V. 128 16190 2006 JRNL REFN ISSN 0002-7863 JRNL PMID 17165772 JRNL DOI 10.1021/JA0646491 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 21057 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.248 REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.305 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1129 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1525 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3150 REMARK 3 BIN FREE R VALUE SET COUNT : 98 REMARK 3 BIN FREE R VALUE : 0.3820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 924 REMARK 3 NUCLEIC ACID ATOMS : 246 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 228 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 25.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.51000 REMARK 3 B22 (A**2) : 0.51000 REMARK 3 B33 (A**2) : -0.76000 REMARK 3 B12 (A**2) : 0.25000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.127 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.137 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.128 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.467 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.880 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1235 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1712 ; 2.007 ; 2.253 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 114 ; 5.198 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 38 ;43.543 ;25.263 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 195 ;18.332 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;21.039 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 193 ; 0.158 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 813 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 730 ; 0.277 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 819 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 191 ; 0.219 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 46 ; 0.208 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.268 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 604 ; 0.850 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 958 ; 1.314 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 807 ; 2.002 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 754 ; 2.695 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 113 A 170 REMARK 3 ORIGIN FOR THE GROUP (A): -10.9450 69.8010 -2.5230 REMARK 3 T TENSOR REMARK 3 T11: -0.0333 T22: -0.1507 REMARK 3 T33: -0.2056 T12: 0.0195 REMARK 3 T13: 0.0263 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 5.5439 L22: 4.8850 REMARK 3 L33: 3.1376 L12: -2.4320 REMARK 3 L13: -1.2204 L23: 0.3617 REMARK 3 S TENSOR REMARK 3 S11: 0.3027 S12: 0.2839 S13: 0.1433 REMARK 3 S21: -0.4773 S22: -0.2308 S23: 0.0914 REMARK 3 S31: -0.1511 S32: -0.1384 S33: -0.0718 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 201 B 206 REMARK 3 ORIGIN FOR THE GROUP (A): -14.9640 58.6000 6.4410 REMARK 3 T TENSOR REMARK 3 T11: -0.0643 T22: -0.1165 REMARK 3 T33: -0.1568 T12: -0.0439 REMARK 3 T13: -0.0364 T23: -0.0490 REMARK 3 L TENSOR REMARK 3 L11: 1.5924 L22: 6.0610 REMARK 3 L33: 6.2215 L12: 1.6171 REMARK 3 L13: -1.6488 L23: 2.7918 REMARK 3 S TENSOR REMARK 3 S11: -0.0011 S12: 0.1437 S13: -0.1477 REMARK 3 S21: 0.1039 S22: 0.1599 S23: -0.1407 REMARK 3 S31: 0.2594 S32: 0.1657 S33: -0.1589 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 113 D 169 REMARK 3 ORIGIN FOR THE GROUP (A): -24.4890 46.6330 20.9630 REMARK 3 T TENSOR REMARK 3 T11: -0.0769 T22: -0.0686 REMARK 3 T33: -0.1955 T12: -0.0013 REMARK 3 T13: 0.0030 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 3.9111 L22: 3.3464 REMARK 3 L33: 4.7423 L12: 0.4782 REMARK 3 L13: -0.0850 L23: -0.5264 REMARK 3 S TENSOR REMARK 3 S11: -0.0644 S12: -0.2480 S13: 0.1776 REMARK 3 S21: 0.1388 S22: 0.0543 S23: 0.2042 REMARK 3 S31: -0.2691 S32: -0.2335 S33: 0.0101 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 201 E 206 REMARK 3 ORIGIN FOR THE GROUP (A): -16.8820 55.3800 11.5240 REMARK 3 T TENSOR REMARK 3 T11: -0.0289 T22: -0.1289 REMARK 3 T33: -0.1689 T12: -0.0258 REMARK 3 T13: -0.0303 T23: -0.0443 REMARK 3 L TENSOR REMARK 3 L11: 1.5670 L22: 6.1947 REMARK 3 L33: 10.1610 L12: 1.4594 REMARK 3 L13: 1.9147 L23: 3.5687 REMARK 3 S TENSOR REMARK 3 S11: -0.1990 S12: 0.1195 S13: 0.0965 REMARK 3 S21: 0.3590 S22: 0.1872 S23: -0.1113 REMARK 3 S31: 0.2678 S32: 0.1207 S33: 0.0118 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2HEO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1000038261. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22226 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 65.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : 0.08200 REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.41700 REMARK 200 R SYM FOR SHELL (I) : 0.41700 REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1J75 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 4000, 0.2M NA/K PHOSPHATE, REMARK 280 0.1M MES, 5MM BMERCAPTO-ETHANOL, PH 6.0, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 18.44500 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.89000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.66750 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 46.11250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 9.22250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS DIMER PRESENT IN THE ASYMMETRIC REMARK 300 UNIT, NO NEED TO SYMMETRY OPERATIONS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E, A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DT B 200 REMARK 465 DT E 200 REMARK 465 GLY A 104 REMARK 465 SER A 105 REMARK 465 HIS A 106 REMARK 465 MET A 107 REMARK 465 LEU A 108 REMARK 465 SER A 109 REMARK 465 THR A 110 REMARK 465 GLY A 111 REMARK 465 GLY D 104 REMARK 465 SER D 105 REMARK 465 HIS D 106 REMARK 465 MET D 107 REMARK 465 LEU D 108 REMARK 465 SER D 109 REMARK 465 THR D 110 REMARK 465 GLY D 111 REMARK 465 GLY D 170 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 112 CG OD1 OD2 REMARK 470 LYS D 117 CE NZ REMARK 470 LYS D 153 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH E 82 O HOH E 211 2.14 REMARK 500 N7 DG E 206 O HOH E 210 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 175 O HOH D 219 6665 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU A 152 C LYS A 153 N 0.186 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG B 202 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC B 203 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DG B 204 O4' - C1' - N9 ANGL. DEV. = -6.5 DEGREES REMARK 500 DG B 204 N9 - C4 - C5 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG B 204 N3 - C2 - N2 ANGL. DEV. = -4.5 DEGREES REMARK 500 DC E 201 OP1 - P - OP2 ANGL. DEV. = 13.4 DEGREES REMARK 500 DG E 204 O4' - C1' - N9 ANGL. DEV. = -6.8 DEGREES REMARK 500 DC E 205 C3' - C2' - C1' ANGL. DEV. = -5.4 DEGREES REMARK 500 LEU A 152 CA - C - N ANGL. DEV. = 16.4 DEGREES REMARK 500 LEU A 152 O - C - N ANGL. DEV. = -17.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 164 -10.89 83.98 REMARK 500 LEU D 114 -14.37 176.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1J75 RELATED DB: PDB REMARK 900 THE SAME COMPLEX, BUT WITH A MUTANT OF PROTEIN DLM1 DBREF 2HEO A 108 170 UNP Q9QY24 ZBP1_MOUSE 8 70 DBREF 2HEO D 108 170 UNP Q9QY24 ZBP1_MOUSE 8 70 DBREF 2HEO B 200 206 PDB 2HEO 2HEO 200 206 DBREF 2HEO E 200 206 PDB 2HEO 2HEO 200 206 SEQADV 2HEO GLY A 104 UNP Q9QY24 CLONING ARTIFACT SEQADV 2HEO SER A 105 UNP Q9QY24 CLONING ARTIFACT SEQADV 2HEO HIS A 106 UNP Q9QY24 CLONING ARTIFACT SEQADV 2HEO MET A 107 UNP Q9QY24 CLONING ARTIFACT SEQADV 2HEO ALA A 130 UNP Q9QY24 LYS 30 ENGINEERED MUTATION SEQADV 2HEO PHE A 132 UNP Q9QY24 GLY 32 ENGINEERED MUTATION SEQADV 2HEO SER A 162 UNP Q9QY24 GLU 62 ENGINEERED MUTATION SEQADV 2HEO LYS A 164 UNP Q9QY24 ALA 64 ENGINEERED MUTATION SEQADV 2HEO TYR A 165 UNP Q9QY24 THR 65 ENGINEERED MUTATION SEQADV 2HEO GLY D 104 UNP Q9QY24 CLONING ARTIFACT SEQADV 2HEO SER D 105 UNP Q9QY24 CLONING ARTIFACT SEQADV 2HEO HIS D 106 UNP Q9QY24 CLONING ARTIFACT SEQADV 2HEO MET D 107 UNP Q9QY24 CLONING ARTIFACT SEQADV 2HEO ALA D 130 UNP Q9QY24 LYS 30 ENGINEERED MUTATION SEQADV 2HEO PHE D 132 UNP Q9QY24 GLY 32 ENGINEERED MUTATION SEQADV 2HEO SER D 162 UNP Q9QY24 GLU 62 ENGINEERED MUTATION SEQADV 2HEO LYS D 164 UNP Q9QY24 ALA 64 ENGINEERED MUTATION SEQADV 2HEO TYR D 165 UNP Q9QY24 THR 65 ENGINEERED MUTATION SEQRES 1 B 7 DT DC DG DC DG DC DG SEQRES 1 E 7 DT DC DG DC DG DC DG SEQRES 1 A 67 GLY SER HIS MET LEU SER THR GLY ASP ASN LEU GLU GLN SEQRES 2 A 67 LYS ILE LEU GLN VAL LEU SER ASP ASP GLY GLY PRO VAL SEQRES 3 A 67 ALA ILE PHE GLN LEU VAL LYS LYS CYS GLN VAL PRO LYS SEQRES 4 A 67 LYS THR LEU ASN GLN VAL LEU TYR ARG LEU LYS LYS GLU SEQRES 5 A 67 ASP ARG VAL SER SER PRO SER PRO LYS TYR TRP SER ILE SEQRES 6 A 67 GLY GLY SEQRES 1 D 67 GLY SER HIS MET LEU SER THR GLY ASP ASN LEU GLU GLN SEQRES 2 D 67 LYS ILE LEU GLN VAL LEU SER ASP ASP GLY GLY PRO VAL SEQRES 3 D 67 ALA ILE PHE GLN LEU VAL LYS LYS CYS GLN VAL PRO LYS SEQRES 4 D 67 LYS THR LEU ASN GLN VAL LEU TYR ARG LEU LYS LYS GLU SEQRES 5 D 67 ASP ARG VAL SER SER PRO SER PRO LYS TYR TRP SER ILE SEQRES 6 D 67 GLY GLY FORMUL 5 HOH *228(H2 O) HELIX 1 1 ASP A 112 GLY A 126 1 15 HELIX 2 2 ILE A 131 GLN A 139 1 9 HELIX 3 3 PRO A 141 GLU A 155 1 15 HELIX 4 4 LEU D 114 GLY D 126 1 13 HELIX 5 5 ILE D 131 GLN D 139 1 9 HELIX 6 6 PRO D 141 GLU D 155 1 15 SHEET 1 A 3 VAL A 129 ALA A 130 0 SHEET 2 A 3 TYR A 165 ILE A 168 -1 O TRP A 166 N VAL A 129 SHEET 3 A 3 VAL A 158 SER A 162 -1 N SER A 159 O SER A 167 SHEET 1 B 3 VAL D 129 ALA D 130 0 SHEET 2 B 3 TYR D 165 ILE D 168 -1 O TRP D 166 N VAL D 129 SHEET 3 B 3 VAL D 158 SER D 159 -1 N SER D 159 O SER D 167 CRYST1 79.910 79.910 55.335 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012514 0.007225 0.000000 0.00000 SCALE2 0.000000 0.014450 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018072 0.00000