HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 23-JUN-06 2HFI TITLE SOLUTION NMR STRUCTURE OF PROTEIN YPPE FROM BACILLUS SUBTILIS. TITLE 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET SR213 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN YPPE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: YPPE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BC21(DE3)+MAGIC; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SR213-21.2 KEYWDS YPPE_BACSU, GFT NMR, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, UNKNOWN KEYWDS 3 FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.LIU,K.K.SINGARAPU,D.PARISH,A.ELETSKY,D.XU,D.SUKUMARAN,C.K.HO, AUTHOR 2 Y.FANG,K.CUNNINGHAM,L.-C.MA,R.XIAO,J.LIU,M.BARAN,G.V.T.SWAPNA, AUTHOR 3 T.B.ACTON,B.ROST,G.T.MONTELIONE,T.SZYPERSKI,NORTHEAST STRUCTURAL AUTHOR 4 GENOMICS CONSORTIUM (NESG) REVDAT 3 09-MAR-22 2HFI 1 REMARK SEQADV REVDAT 2 24-FEB-09 2HFI 1 VERSN REVDAT 1 25-JUL-06 2HFI 0 JRNL AUTH G.LIU,K.K.SINGARAPU,D.PARISH,A.ELETSKY,D.K.SUKUMARAN,D.XU, JRNL AUTH 2 C.K.HO,Y.FANG,K.CUNNINGHAM,L.-C.MA,R.XIAO,J.LIU,M.BARAN, JRNL AUTH 3 G.V.T.SWAPNA,T.B.ACTON,B.ROST,G.T.MONTELIONE,T.SZYPERSKI JRNL TITL SOLUTION NMR STRUCTURE OF HYPOTHETICAL PROTEIN YPPE: JRNL TITL 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET SR213 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR C, CNS 1.1 REMARK 3 AUTHORS : VARIAN (VNMR), BRUNGER, A.T. (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2HFI COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1000038289. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : BUFFER: MC2023 -- 50MM ARGININE, REMARK 210 10MM DTT, 50MM BIS TRIS PH 6.5, REMARK 210 95% H2O, 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : SIMULTANEOUS HETERONUCLEAR REMARK 210 RESOLVED [1H,1H]-NOESY; GFT (4,3) REMARK 210 D HNNCABCA; GFT (4,3)D CABCA(CO) REMARK 210 NHN; GFT (4,3) HCCH; HNCACB; REMARK 210 HABCONH REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.3, XEASY 1.3.1.3, REMARK 210 CYANA 2.1, AUTOSTRUCTURE 2.0 REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS, TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE PROTEIN START TO FORM DIMER AT NMR CONCENTRATION REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 LEU A 124 REMARK 465 GLU A 125 REMARK 465 HIS A 126 REMARK 465 HIS A 127 REMARK 465 HIS A 128 REMARK 465 HIS A 129 REMARK 465 HIS A 130 REMARK 465 HIS A 131 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 28 -34.18 169.81 REMARK 500 1 PHE A 37 -52.79 -173.33 REMARK 500 1 GLU A 38 -73.76 -64.18 REMARK 500 1 ARG A 65 -106.14 -87.27 REMARK 500 1 ARG A 66 123.69 172.91 REMARK 500 1 HIS A 95 -76.96 -87.28 REMARK 500 1 LYS A 96 -76.07 -153.76 REMARK 500 1 ASP A 121 123.98 73.04 REMARK 500 2 THR A 5 -98.52 62.34 REMARK 500 2 ASN A 29 -78.96 65.61 REMARK 500 2 SER A 33 94.29 63.33 REMARK 500 2 LYS A 68 -64.57 -93.78 REMARK 500 2 ASP A 121 135.81 72.36 REMARK 500 2 SER A 122 98.70 -164.13 REMARK 500 3 GLN A 4 80.04 56.93 REMARK 500 3 ASN A 29 -168.30 -168.47 REMARK 500 3 PHE A 36 -78.95 62.78 REMARK 500 3 PHE A 37 30.43 -80.54 REMARK 500 3 LYS A 41 -60.24 -163.34 REMARK 500 3 ARG A 66 137.85 71.83 REMARK 500 3 ASP A 121 68.89 61.91 REMARK 500 4 SER A 3 84.81 57.74 REMARK 500 4 THR A 5 -71.79 70.57 REMARK 500 4 HIS A 32 -79.09 -81.61 REMARK 500 4 LYS A 41 -57.25 -164.82 REMARK 500 4 ARG A 66 150.20 77.28 REMARK 500 4 HIS A 95 -67.15 -129.08 REMARK 500 4 LYS A 96 -57.94 -166.88 REMARK 500 4 ASP A 121 140.86 70.46 REMARK 500 5 LEU A 2 142.49 73.40 REMARK 500 5 LEU A 6 -38.93 170.05 REMARK 500 5 SER A 30 122.07 73.16 REMARK 500 5 SER A 33 -31.10 73.14 REMARK 500 5 ASP A 35 91.78 -169.19 REMARK 500 5 PHE A 36 -61.57 70.11 REMARK 500 5 GLU A 38 -40.18 71.17 REMARK 500 5 THR A 39 -63.90 -98.86 REMARK 500 5 LYS A 41 -66.53 -147.26 REMARK 500 5 ARG A 65 -166.33 -114.94 REMARK 500 5 HIS A 93 35.15 -82.62 REMARK 500 5 HIS A 95 -76.89 61.51 REMARK 500 5 LYS A 96 -54.87 -162.14 REMARK 500 6 ASN A 31 85.11 60.97 REMARK 500 6 SER A 33 141.31 70.61 REMARK 500 6 TYR A 34 -55.73 -160.64 REMARK 500 6 PHE A 37 -20.22 -141.25 REMARK 500 6 ARG A 65 -80.32 -106.42 REMARK 500 6 ARG A 66 141.33 -175.44 REMARK 500 6 TYR A 69 -70.08 67.16 REMARK 500 7 LEU A 2 112.15 -162.03 REMARK 500 REMARK 500 THIS ENTRY HAS 178 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SR213 RELATED DB: TARGETDB DBREF 2HFI A 1 123 UNP P50833 YPPE_BACSU 1 123 SEQADV 2HFI LEU A 124 UNP P50833 CLONING ARTIFACT SEQADV 2HFI GLU A 125 UNP P50833 CLONING ARTIFACT SEQADV 2HFI HIS A 126 UNP P50833 EXPRESSION TAG SEQADV 2HFI HIS A 127 UNP P50833 EXPRESSION TAG SEQADV 2HFI HIS A 128 UNP P50833 EXPRESSION TAG SEQADV 2HFI HIS A 129 UNP P50833 EXPRESSION TAG SEQADV 2HFI HIS A 130 UNP P50833 EXPRESSION TAG SEQADV 2HFI HIS A 131 UNP P50833 EXPRESSION TAG SEQRES 1 A 131 MET LEU SER GLN THR LEU LEU GLU MET THR GLU GLN MET SEQRES 2 A 131 ILE GLU VAL ALA GLU LYS GLY ALA ASP ARG TYR GLN GLU SEQRES 3 A 131 GLY LYS ASN SER ASN HIS SER TYR ASP PHE PHE GLU THR SEQRES 4 A 131 ILE LYS PRO ALA VAL GLU GLU ASN ASP GLU LEU ALA ALA SEQRES 5 A 131 ARG TRP ALA GLU GLY ALA LEU GLU LEU ILE LYS VAL ARG SEQRES 6 A 131 ARG PRO LYS TYR VAL HIS LYS GLU GLN ILE GLU ALA VAL SEQRES 7 A 131 LYS ASP ASN PHE LEU GLU LEU VAL LEU GLN SER TYR VAL SEQRES 8 A 131 HIS HIS ILE HIS LYS LYS ARG PHE LYS ASP ILE THR GLU SEQRES 9 A 131 SER VAL LEU TYR THR LEU HIS ALA VAL LYS ASP GLU ILE SEQRES 10 A 131 ALA ARG GLU ASP SER ARG LEU GLU HIS HIS HIS HIS HIS SEQRES 11 A 131 HIS HELIX 1 1 GLN A 4 GLY A 27 1 24 HELIX 2 2 THR A 39 ARG A 65 1 27 HELIX 3 3 HIS A 71 HIS A 92 1 22 HELIX 4 4 LYS A 96 ASP A 121 1 26 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1