HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 26-JUN-06 2HGC TITLE SOLUTION NMR STRUCTURE OF THE YJCQ PROTEIN FROM BACILLUS SUBTILIS. TITLE 2 NORTHEAST STRUCTURAL GENOMICS TARGET SR346. COMPND MOL_ID: 1; COMPND 2 MOLECULE: YJCQ PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: YJCQ; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MGK; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET21; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SR346_21.4 KEYWDS SR346, AUTOSTRUCTURE, NESG, PSI-2, NORTHEAST STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, PROTEIN STRUCTURE INITIATIVE, STRUCTURAL GENOMICS, KEYWDS 3 UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.ROSSI,J.R.CORT,C.K.HO,H.JANJUA,K.CUNNINGHAM,L.-C.MA,R.XIAO,J.LIU, AUTHOR 2 M.BARAN,G.V.T.SWAPNA,T.B.ACTON,B.ROST,M.A.KENNEDY,G.T.MONTELIONE, AUTHOR 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 4 09-MAR-22 2HGC 1 REMARK SEQADV REVDAT 3 24-FEB-09 2HGC 1 VERSN REVDAT 2 29-AUG-06 2HGC 1 AUTHOR REVDAT 1 22-AUG-06 2HGC 0 JRNL AUTH P.ROSSI,J.R.CORT,C.K.HO,H.JANJUA,K.CUNNINGHAM,L.-C.MA, JRNL AUTH 2 R.XIAO,J.LIU,M.BARAN,G.V.T.SWAPNA,T.B.ACTON,B.ROST, JRNL AUTH 3 M.A.KENNEDY,G.T.MONTELIONE JRNL TITL SOLUTION NMR STRUCTURE OF THE YJCQ PROTEIN FROM BACILLUS JRNL TITL 2 SUBTILIS. NORTHEAST STRUCTURAL GENOMICS TARGET SR346. (CASP JRNL TITL 3 TARGET) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, X-PLOR 2.11.2, PSVS 1.3, PROCHECK NMR REMARK 3 3.51, MOLPROBITY 3.01 REMARK 3 AUTHORS : VARIAN INC. (VNMR), CLORE (X-PLOR), BHATTACHARYA, REMARK 3 MONTELIONE (PSVS), LASKOWSKI, MACARTHUR (PROCHECK REMARK 3 NMR), LOVELL, RICHARDSON ET. AL. (MOLPROBITY) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2HGC COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1000038316. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293; 293 REMARK 210 PH : 5.5; 5.5 REMARK 210 IONIC STRENGTH : 0.1 M NACL; 0.1 M NACL REMARK 210 PRESSURE : ATMOSPHERIC ATM; ATMOSPHERIC ATM REMARK 210 SAMPLE CONTENTS : 0.85 MM U-13C,15N SR346, 5MM REMARK 210 CACL2, 100MM NACL, 20MM NH4OAC, REMARK 210 10MM DTT, 0.02% NAN3; 0.77 MM 5%- REMARK 210 13C,U-15N SR346, 5MM CACL2, REMARK 210 100MM NACL, 20MM NH4OAC, 10MM REMARK 210 DTT, 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; HCCH-TOCSY, REMARK 210 HCCH-COSY,CCCONH-TOCSY; 3D- REMARK 210 HNCACB, HNCOCACB, HBHACONH, HNCO; REMARK 210 C13_HSQC_NOCT STEREOSPECIFIC VL REMARK 210 ME ASSIGN.; HET-NOE, T1/T1RHO REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, DYANA 1.2, NMRPIPE REMARK 210 2005, SPARKY 3.11, AUTOASSIGN REMARK 210 2.2.1, AUTOSTRUCTURE 2.1.1, REMARK 210 HYPER 2.1, PDBSTAT 4.1 REMARK 210 METHOD USED : NOESY ASSIGNMENTS MADE WITH REMARK 210 ITERATIVE METHOD USING CS, 3J, REMARK 210 HYPER (DIHEDRAL), AND DYANA FOR REMARK 210 SIMULATED ANNEALING MD. REMARK 210 CONVERGED STRUCTURES ARE FURTHER REMARK 210 REFINED USING NIH-XPLOR FOLLOWED REMARK 210 BY CNS IN EXPLICIT WATER SHELL REMARK 210 (NIELGES) . FULL LENGHT SEQUENCE REMARK 210 WAS CARRIED THROUGH THE REMARK 210 REFINEMENT PROTOCOL, THE REMARK 210 DISORDERED REGIONS AND HEXHIS REMARK 210 TAG ARE NOT REPORTED. STRUCTURE REMARK 210 BASED ON 595 CONSTRAINTS, 249 REMARK 210 LONG RANGE, 163 DIHEDRAL REMARK 210 CONSTRAINTS AND 36 H-BOND REMARK 210 CONSTRAINTS. REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: REMARK 210 STRUCTURE DETERMINED BY TRIPLE RESONANCE NMR SPECTROSCOPY. MONOMER REMARK 210 IN SOLUTION BY NMR TC = 8.6 +/- 0.1 NS (1D T1/T1RHO +/- FIT STD). REMARK 210 CIS PEPTIDE RES. 19T-20P. STRUCTURE DETERMINED BY TRIPLE RESONANCE REMARK 210 NMR SPECTROSCOPY. COORDINATES REPORTED FROM RESIDUE 5 TO 82 REMARK 210 SECTION BASED ON ORDER PARAMETER. REMARK 210 AUTOASSIGN USED FOR BACKBONE ASSIGNMENT, MANUALLY COMPLETED REMARK 210 SIDECHAIN. 13C AND 15N NOESY WERE ASSIGNED WITH AUTOSTRUCTURE. REMARK 210 DIHEDRAL ANGLE RESTRAINTS DETERMINED BY HYPER . ASSIGNMENT STATS REMARK 210 (EXCLUDING C-TERM TAG): BACKBONE 84.6%, SIDECHAIN 74.7%, AROMATIC REMARK 210 (SC) 89.36%, VL METHYL STEREOSPECIFIC 100%, UNAMBIGUOUS SIDECHAIN REMARK 210 NH2 85.7%. STRUCTURE QUALITY FACTOR PSVS 1.3: ORDERED RESIDUES REMARK 210 RANGES ALPHA HELIX (7-17, 23-26,30-43, 67-76), B-STRAND (46-47, 64- REMARK 210 65, 50-51, 56-57) [S(PHI)+S(PSI)]>1.8. RMSD 0.6 BB, 1.2 ALL HEAVY REMARK 210 ATOMS. RAMA: 95.8% MOST FAV, 3.7% ADDTL. ALL., 0.3 GEN. ALL.,0.3% REMARK 210 DISALL. PROCHECK (PSI-PHI): 0.03/0.43 (RAW/Z), PROCHECK (ALL): REMARK 210 1.18/-1.18 (RAW/Z), MOLPROBITY CLASH: 27.67/-3.22 (RAW/Z). RPF REMARK 210 SCORES ALL ASSIGNED RESIDUES (FIT OF NOESY PEAKLISTS TO STRUCTURE): REMARK 210 RECALL: 0.896, PRECISION: 0.90, F-MEASURE: 0.898, DP-SCORE: 0.70. REMARK 210 MONOMER BY LIGHT SCATTERING. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 LYS A 3 REMARK 465 ASP A 4 REMARK 465 TYR A 83 REMARK 465 LYS A 84 REMARK 465 THR A 85 REMARK 465 ILE A 86 REMARK 465 LYS A 87 REMARK 465 GLU A 88 REMARK 465 ILE A 89 REMARK 465 LYS A 90 REMARK 465 ASP A 91 REMARK 465 TRP A 92 REMARK 465 ILE A 93 REMARK 465 LYS A 94 REMARK 465 LEU A 95 REMARK 465 GLU A 96 REMARK 465 HIS A 97 REMARK 465 HIS A 98 REMARK 465 HIS A 99 REMARK 465 HIS A 100 REMARK 465 HIS A 101 REMARK 465 HIS A 102 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS A 12 OE2 GLU A 13 1.56 REMARK 500 O ASN A 18 HG1 THR A 19 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 18 -1.78 74.20 REMARK 500 1 THR A 19 153.60 59.55 REMARK 500 1 SER A 52 -88.51 -121.80 REMARK 500 1 ASP A 54 -33.32 -169.17 REMARK 500 1 SER A 80 93.25 -68.90 REMARK 500 2 ASN A 18 -90.09 70.25 REMARK 500 2 THR A 19 164.84 173.01 REMARK 500 2 THR A 78 -145.04 -81.68 REMARK 500 2 TRP A 79 146.83 79.99 REMARK 500 3 ASN A 18 -90.45 68.89 REMARK 500 3 THR A 19 159.33 177.19 REMARK 500 3 SER A 52 -52.99 -136.69 REMARK 500 3 ASP A 54 -10.02 82.15 REMARK 500 3 TRP A 79 -148.57 44.57 REMARK 500 4 ASN A 18 -20.20 76.66 REMARK 500 4 THR A 19 163.41 61.95 REMARK 500 4 SER A 52 51.85 -116.21 REMARK 500 4 ASP A 54 -69.64 -167.07 REMARK 500 4 LYS A 81 -150.65 -76.57 REMARK 500 5 THR A 19 163.27 56.84 REMARK 500 5 ASP A 54 -54.00 -123.32 REMARK 500 5 SER A 80 83.28 53.40 REMARK 500 6 THR A 19 166.65 55.09 REMARK 500 6 SER A 52 30.36 -98.14 REMARK 500 6 ASP A 53 -46.81 72.00 REMARK 500 6 ASP A 54 -75.71 -66.05 REMARK 500 6 TYR A 59 -166.44 -116.06 REMARK 500 6 THR A 78 -81.96 -91.33 REMARK 500 6 TRP A 79 80.96 45.59 REMARK 500 6 SER A 80 -34.84 70.26 REMARK 500 7 THR A 19 164.42 55.48 REMARK 500 7 ASP A 53 -76.03 64.85 REMARK 500 7 LEU A 58 144.75 68.20 REMARK 500 7 LEU A 61 41.84 -146.57 REMARK 500 7 THR A 78 -84.92 -64.96 REMARK 500 7 TRP A 79 175.20 66.92 REMARK 500 8 ASN A 18 -17.24 75.38 REMARK 500 8 THR A 19 156.92 58.62 REMARK 500 8 SER A 52 -80.72 -122.33 REMARK 500 8 ASP A 54 -27.87 164.32 REMARK 500 8 SER A 80 92.98 -174.45 REMARK 500 9 THR A 19 171.96 54.98 REMARK 500 9 ASP A 54 -46.66 -156.78 REMARK 500 9 TRP A 79 -74.04 64.08 REMARK 500 9 SER A 80 -54.40 -154.15 REMARK 500 9 LYS A 81 -77.55 68.44 REMARK 500 10 THR A 19 154.14 57.76 REMARK 500 10 SER A 52 -75.56 -99.06 REMARK 500 10 ASP A 54 -25.99 163.47 REMARK 500 10 LYS A 81 -83.68 66.58 REMARK 500 REMARK 500 THIS ENTRY HAS 99 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SR346 RELATED DB: TARGETDB DBREF 2HGC A 1 94 UNP O31639 O31639_BACSU 1 94 SEQADV 2HGC LEU A 95 UNP O31639 CLONING ARTIFACT SEQADV 2HGC GLU A 96 UNP O31639 CLONING ARTIFACT SEQADV 2HGC HIS A 97 UNP O31639 EXPRESSION TAG SEQADV 2HGC HIS A 98 UNP O31639 EXPRESSION TAG SEQADV 2HGC HIS A 99 UNP O31639 EXPRESSION TAG SEQADV 2HGC HIS A 100 UNP O31639 EXPRESSION TAG SEQADV 2HGC HIS A 101 UNP O31639 EXPRESSION TAG SEQADV 2HGC HIS A 102 UNP O31639 EXPRESSION TAG SEQRES 1 A 102 MET ASN LYS ASP LYS LEU ARG TYR ALA ILE LEU LYS GLU SEQRES 2 A 102 ILE PHE GLU GLY ASN THR PRO LEU SER GLU ASN ASP ILE SEQRES 3 A 102 GLY VAL THR GLU ASP GLN PHE ASP ASP ALA VAL ASN PHE SEQRES 4 A 102 LEU LYS ARG GLU GLY TYR ILE ILE GLY VAL HIS TYR SER SEQRES 5 A 102 ASP ASP ARG PRO HIS LEU TYR LYS LEU GLY PRO GLU LEU SEQRES 6 A 102 THR GLU LYS GLY GLU ASN TYR LEU LYS GLU ASN GLY THR SEQRES 7 A 102 TRP SER LYS ALA TYR LYS THR ILE LYS GLU ILE LYS ASP SEQRES 8 A 102 TRP ILE LYS LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 LEU A 6 ASN A 18 1 13 HELIX 2 2 SER A 22 GLY A 27 1 6 HELIX 3 3 THR A 29 GLY A 44 1 16 HELIX 4 4 THR A 66 GLY A 77 1 12 SHEET 1 A 2 ILE A 46 ILE A 47 0 SHEET 2 A 2 GLU A 64 LEU A 65 -1 O GLU A 64 N ILE A 47 SHEET 1 B 2 HIS A 50 TYR A 51 0 SHEET 2 B 2 PRO A 56 HIS A 57 -1 O HIS A 57 N HIS A 50 CISPEP 1 THR A 19 PRO A 20 1 0.33 CISPEP 2 THR A 19 PRO A 20 2 -3.69 CISPEP 3 THR A 19 PRO A 20 3 0.03 CISPEP 4 THR A 19 PRO A 20 4 -2.12 CISPEP 5 THR A 19 PRO A 20 5 -2.01 CISPEP 6 THR A 19 PRO A 20 6 -3.07 CISPEP 7 THR A 19 PRO A 20 7 -1.82 CISPEP 8 THR A 19 PRO A 20 8 0.66 CISPEP 9 THR A 19 PRO A 20 9 -3.98 CISPEP 10 THR A 19 PRO A 20 10 -0.60 CISPEP 11 THR A 19 PRO A 20 11 0.85 CISPEP 12 THR A 19 PRO A 20 12 0.45 CISPEP 13 THR A 19 PRO A 20 13 -0.30 CISPEP 14 THR A 19 PRO A 20 14 -2.90 CISPEP 15 THR A 19 PRO A 20 15 -2.22 CISPEP 16 THR A 19 PRO A 20 16 -1.91 CISPEP 17 THR A 19 PRO A 20 17 -3.33 CISPEP 18 THR A 19 PRO A 20 18 -0.17 CISPEP 19 THR A 19 PRO A 20 19 -1.54 CISPEP 20 THR A 19 PRO A 20 20 1.40 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1