HEADER RNA BINDING PROTEIN 27-JUN-06 2HH3 TITLE SOLUTION STRUCTURE OF THE THIRD KH DOMAIN OF KSRP COMPND MOL_ID: 1; COMPND 2 MOLECULE: KH-TYPE SPLICING REGULATORY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: THIRD KH DOMAIN (RESIDUES 142-212); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KH-RNA BINDING DOMAIN, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.F.GARCIA-MAYORAL REVDAT 3 09-MAR-22 2HH3 1 REMARK SEQADV REVDAT 2 24-FEB-09 2HH3 1 VERSN REVDAT 1 08-MAY-07 2HH3 0 JRNL AUTH M.F.GARCIA-MAYORAL,D.HOLLINGWORTH,L.MASINO,I.DIAZ-MORENO, JRNL AUTH 2 G.KELLY,R.GHERZI,C.F.CHOU,C.Y.CHEN,A.RAMOS JRNL TITL THE STRUCTURE OF THE C-TERMINAL KH DOMAINS OF KSRP REVEALS A JRNL TITL 2 NONCANONICAL MOTIF IMPORTANT FOR MRNA DEGRADATION. JRNL REF STRUCTURE V. 15 485 2007 JRNL REFN ISSN 0969-2126 JRNL PMID 17437720 JRNL DOI 10.1016/J.STR.2007.03.006 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : UXNMR 3.5, ARIA 1.2 REMARK 3 AUTHORS : J. LINGE, S. O'DONOGHUE, M. NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT IN WATER SOLVENT REMARK 4 REMARK 4 2HH3 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1000038340. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 100 MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM KSRP 15N-KH3, 10 MM TRIS, REMARK 210 100 MM NACL, 1MM TCEP; 0.5 MM REMARK 210 KSRP 15N,13C-KH3, 10 MM TRIS, REMARK 210 100 MM NACL, 1MM TCEP REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR, NMRPIPE, SPARKY, ARIA 1.2 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 ALA A 2 REMARK 465 MET A 3 REMARK 465 ALA A 4 REMARK 465 THR A 5 REMARK 465 GLY A 6 REMARK 465 SER A 7 REMARK 465 ARG A 8 REMARK 465 ILE A 9 REMARK 465 GLY A 10 REMARK 465 GLY A 11 REMARK 465 SER A 83 REMARK 465 GLY A 84 REMARK 465 PRO A 85 REMARK 465 PRO A 86 REMARK 465 GLY A 87 REMARK 465 PRO A 88 REMARK 465 PRO A 89 REMARK 465 GLY A 90 REMARK 465 GLY A 91 REMARK 465 PRO A 92 REMARK 465 GLY A 93 REMARK 465 MET A 94 REMARK 465 PRO A 95 REMARK 465 PRO A 96 REMARK 465 GLY A 97 REMARK 465 GLY A 98 REMARK 465 ARG A 99 REMARK 465 GLY A 100 REMARK 465 ARG A 101 REMARK 465 GLY A 102 REMARK 465 ARG A 103 REMARK 465 GLY A 104 REMARK 465 GLN A 105 REMARK 465 GLY A 106 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS A 35 OD1 ASP A 39 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 29 -5.37 70.26 REMARK 500 1 ASP A 49 -75.80 -155.77 REMARK 500 1 ASP A 50 144.18 67.03 REMARK 500 2 ARG A 28 -56.65 -132.81 REMARK 500 2 ASP A 50 -84.48 67.26 REMARK 500 2 THR A 52 30.88 -90.60 REMARK 500 3 ASP A 49 -76.48 -69.71 REMARK 500 4 GLN A 48 -34.19 72.06 REMARK 500 4 ASP A 49 -177.38 -68.66 REMARK 500 4 ASP A 50 -80.45 65.05 REMARK 500 6 ASP A 49 -68.73 -120.55 REMARK 500 6 THR A 52 52.34 -92.80 REMARK 500 7 ARG A 28 -77.94 -69.24 REMARK 500 8 ARG A 28 -87.55 63.97 REMARK 500 9 ARG A 28 -56.43 72.04 REMARK 500 10 ARG A 28 -77.74 -97.96 REMARK 500 10 ASP A 49 109.93 -59.59 REMARK 500 10 THR A 52 12.67 -160.64 REMARK 500 11 ASP A 50 -70.32 69.69 REMARK 500 11 THR A 52 72.19 -150.78 REMARK 500 12 ARG A 28 -70.77 -83.09 REMARK 500 12 GLN A 48 46.58 -76.57 REMARK 500 12 ASP A 49 97.30 -171.98 REMARK 500 13 ASP A 49 75.04 -107.58 REMARK 500 14 ARG A 28 -73.14 65.60 REMARK 500 14 ASP A 49 -158.12 -117.55 REMARK 500 15 ARG A 28 -72.58 -133.94 REMARK 500 15 SER A 29 44.52 -109.38 REMARK 500 16 ASP A 49 -72.72 71.55 REMARK 500 16 THR A 52 95.37 -67.30 REMARK 500 18 LYS A 47 98.55 -63.61 REMARK 500 19 ARG A 28 -68.44 -173.28 REMARK 500 19 GLN A 48 31.60 -80.03 REMARK 500 19 ASP A 50 -56.91 69.45 REMARK 500 20 ARG A 28 82.99 60.10 REMARK 500 20 SER A 29 -25.33 70.59 REMARK 500 20 ASP A 50 -75.56 69.92 REMARK 500 20 THR A 52 85.96 -69.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2HH2 RELATED DB: PDB DBREF 2HH3 A 6 106 UNP Q59EZ9 Q59EZ9_HUMAN 136 236 SEQADV 2HH3 GLY A 1 UNP Q59EZ9 CLONING ARTIFACT SEQADV 2HH3 ALA A 2 UNP Q59EZ9 CLONING ARTIFACT SEQADV 2HH3 MET A 3 UNP Q59EZ9 CLONING ARTIFACT SEQADV 2HH3 ALA A 4 UNP Q59EZ9 CLONING ARTIFACT SEQADV 2HH3 THR A 5 UNP Q59EZ9 CLONING ARTIFACT SEQRES 1 A 106 GLY ALA MET ALA THR GLY SER ARG ILE GLY GLY GLY ILE SEQRES 2 A 106 ASP VAL PRO VAL PRO ARG HIS SER VAL GLY VAL VAL ILE SEQRES 3 A 106 GLY ARG SER GLY GLU MET ILE LYS LYS ILE GLN ASN ASP SEQRES 4 A 106 ALA GLY VAL ARG ILE GLN PHE LYS GLN ASP ASP GLY THR SEQRES 5 A 106 GLY PRO GLU LYS ILE ALA HIS ILE MET GLY PRO PRO ASP SEQRES 6 A 106 ARG CYS GLU HIS ALA ALA ARG ILE ILE ASN ASP LEU LEU SEQRES 7 A 106 GLN SER LEU ARG SER GLY PRO PRO GLY PRO PRO GLY GLY SEQRES 8 A 106 PRO GLY MET PRO PRO GLY GLY ARG GLY ARG GLY ARG GLY SEQRES 9 A 106 GLN GLY HELIX 1 1 SER A 21 GLY A 27 1 7 HELIX 2 2 GLY A 30 GLY A 41 1 12 HELIX 3 3 PRO A 63 ARG A 82 1 20 SHEET 1 A 3 ILE A 13 PRO A 18 0 SHEET 2 A 3 GLU A 55 MET A 61 -1 O LYS A 56 N VAL A 17 SHEET 3 A 3 ARG A 43 PHE A 46 -1 N GLN A 45 O HIS A 59 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1