HEADER TRANSFERASE 28-JUN-06 2HH9 TITLE THIAMIN PYROPHOSPHOKINASE FROM CANDIDA ALBICANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIAMIN PYROPHOSPHOKINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HYPOTHETICAL PROTEIN THI80; COMPND 5 EC: 2.7.6.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDA ALBICANS; SOURCE 3 ORGANISM_TAXID: 5476; SOURCE 4 STRAIN: NIH3147; SOURCE 5 GENE: CA1462; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI K12; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: K12; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSF04, PQE80 KEYWDS THIAMIN, TPK, THIAMIN PYROPHOSPHOKINASE, STRUCTURAL GENOMICS, KEYWDS 2 BACTERIAL TARGETS AT IGS-CNRS, FRANCE, BIGS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.ABERGEL,S.SANTINI,V.MONCHOIS,T.ROUSSELLE,J.M.CLAVERIE,BACTERIAL AUTHOR 2 TARGETS AT IGS-CNRS,FRANCE (BIGS) REVDAT 5 25-OCT-23 2HH9 1 REMARK SEQADV HETSYN LINK REVDAT 4 09-JUN-09 2HH9 1 REVDAT REVDAT 3 24-FEB-09 2HH9 1 VERSN REVDAT 2 20-JAN-09 2HH9 1 JRNL REVDAT 1 18-JUL-06 2HH9 0 JRNL AUTH S.SANTINI,V.MONCHOIS,N.MOUZ,C.SIGOILLOT,T.ROUSSELLE, JRNL AUTH 2 J.M.CLAVERIE,C.ABERGEL JRNL TITL STRUCTURAL CHARACTERIZATION OF CA1462, THE CANDIDA ALBICANS JRNL TITL 2 THIAMINE PYROPHOSPHOKINASE. JRNL REF BMC STRUCT.BIOL. V. 8 33 2008 JRNL REFN ESSN 1472-6807 JRNL PMID 18652651 JRNL DOI 10.1186/1472-6807-8-33 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1184662.660 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 35488 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3541 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4851 REMARK 3 BIN R VALUE (WORKING SET) : 0.2000 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 508 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.011 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4786 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 660 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.45000 REMARK 3 B22 (A**2) : -0.68000 REMARK 3 B33 (A**2) : 0.23000 REMARK 3 B12 (A**2) : -0.58000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.14000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.15 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.16 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.710 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 73.72 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : VIB.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : VIB.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2HH9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1000038346. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-AUG-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95372 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35489 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 57.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : 0.04700 REMARK 200 FOR THE DATA SET : 18.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.08300 REMARK 200 R SYM FOR SHELL (I) : 0.08300 REMARK 200 FOR SHELL : 8.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 2G9Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG4000, 0.2M MAGNESIUM CHLORIDE, REMARK 280 0.1M TRIS, 20% GLYCEROL. PROTEIN INCUBATED WITH THIMAN, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -12 REMARK 465 ALA A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 GLY A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 GLN A 0 REMARK 465 LEU A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 ASP A 4 REMARK 465 SER A 24 REMARK 465 ASP A 25 REMARK 465 SER A 26 REMARK 465 SER A 27 REMARK 465 SER A 28 REMARK 465 SER A 29 REMARK 465 SER A 42 REMARK 465 THR A 43 REMARK 465 ALA A 44 REMARK 465 THR A 45 REMARK 465 THR A 46 REMARK 465 GLN A 47 REMARK 465 THR A 48 REMARK 465 ASP A 90 REMARK 465 ASN A 91 REMARK 465 ASN A 92 REMARK 465 HIS A 93 REMARK 465 HIS A 94 REMARK 465 HIS A 95 REMARK 465 HIS A 96 REMARK 465 HIS A 97 REMARK 465 GLU A 98 REMARK 465 ASN A 99 REMARK 465 ASN A 257 REMARK 465 GLY A 258 REMARK 465 SER A 259 REMARK 465 VAL A 326 REMARK 465 MET B -12 REMARK 465 ALA B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 GLY B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 GLN B 0 REMARK 465 LEU B 1 REMARK 465 SER B 2 REMARK 465 GLU B 3 REMARK 465 ASP B 4 REMARK 465 SER B 24 REMARK 465 ASP B 25 REMARK 465 SER B 26 REMARK 465 SER B 27 REMARK 465 SER B 28 REMARK 465 SER B 29 REMARK 465 SER B 42 REMARK 465 THR B 43 REMARK 465 ALA B 44 REMARK 465 THR B 45 REMARK 465 THR B 46 REMARK 465 GLN B 47 REMARK 465 THR B 48 REMARK 465 ASP B 90 REMARK 465 ASN B 91 REMARK 465 ASN B 92 REMARK 465 HIS B 93 REMARK 465 HIS B 94 REMARK 465 HIS B 95 REMARK 465 HIS B 96 REMARK 465 HIS B 97 REMARK 465 GLU B 98 REMARK 465 ASN B 99 REMARK 465 ASN B 257 REMARK 465 GLY B 258 REMARK 465 VAL B 326 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 78 -104.68 45.82 REMARK 500 VAL A 170 -61.86 -92.57 REMARK 500 ASP A 171 37.88 -146.49 REMARK 500 TRP A 177 -83.23 -61.61 REMARK 500 ASN A 178 69.34 -69.62 REMARK 500 ILE A 190 113.34 -168.72 REMARK 500 ASP B 78 -111.43 46.47 REMARK 500 VAL B 170 -60.50 -90.96 REMARK 500 ASP B 171 35.16 -144.51 REMARK 500 TRP B 177 -89.48 -72.46 REMARK 500 ASN B 181 4.63 -66.69 REMARK 500 SER B 183 80.70 -1.04 REMARK 500 SER B 184 -89.41 -153.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 802 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 78 OD2 REMARK 620 2 ASP A 113 OD1 95.7 REMARK 620 3 ASP A 115 OD1 75.2 75.0 REMARK 620 4 ASP A 142 OD1 113.8 78.6 152.9 REMARK 620 5 ASP A 142 OD2 115.0 122.7 156.2 45.4 REMARK 620 6 HOH A 844 O 86.9 158.3 85.0 120.0 74.6 REMARK 620 7 HOH A 855 O 158.7 94.9 89.9 86.3 73.7 76.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 804 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 113 OD2 REMARK 620 2 ASP A 142 OD1 93.7 REMARK 620 3 LYS A 145 NZ 102.2 114.1 REMARK 620 4 VIB A 702 O1 57.9 112.9 129.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 801 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 78 OD2 REMARK 620 2 ASP B 113 OD1 81.7 REMARK 620 3 ASP B 115 OD1 71.1 84.3 REMARK 620 4 ASP B 142 OD2 103.4 117.4 157.2 REMARK 620 5 HOH B 808 O 168.1 108.0 102.4 78.6 REMARK 620 6 HOH B 845 O 93.3 164.9 80.6 77.6 75.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 803 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 113 OD2 REMARK 620 2 ASP B 142 OD1 92.3 REMARK 620 3 LYS B 145 NZ 103.8 111.7 REMARK 620 4 VIB B 701 O1 58.4 110.9 134.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VIB B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VIB A 702 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2G9Z RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH THIAMIN-PYROPHOSPHATE REMARK 900 RELATED ID: PF-CAL:CA1462 RELATED DB: TARGETDB DBREF 2HH9 A 2 326 UNP Q59N99 Q59N99_CANAL 5 329 DBREF 2HH9 B 2 326 UNP Q59N99 Q59N99_CANAL 5 329 SEQADV 2HH9 MET A -12 UNP Q59N99 EXPRESSION TAG SEQADV 2HH9 ALA A -11 UNP Q59N99 EXPRESSION TAG SEQADV 2HH9 HIS A -10 UNP Q59N99 EXPRESSION TAG SEQADV 2HH9 HIS A -9 UNP Q59N99 EXPRESSION TAG SEQADV 2HH9 HIS A -8 UNP Q59N99 EXPRESSION TAG SEQADV 2HH9 HIS A -7 UNP Q59N99 EXPRESSION TAG SEQADV 2HH9 HIS A -6 UNP Q59N99 EXPRESSION TAG SEQADV 2HH9 HIS A -5 UNP Q59N99 EXPRESSION TAG SEQADV 2HH9 GLY A -4 UNP Q59N99 EXPRESSION TAG SEQADV 2HH9 HIS A -3 UNP Q59N99 EXPRESSION TAG SEQADV 2HH9 HIS A -2 UNP Q59N99 EXPRESSION TAG SEQADV 2HH9 HIS A -1 UNP Q59N99 EXPRESSION TAG SEQADV 2HH9 GLN A 0 UNP Q59N99 EXPRESSION TAG SEQADV 2HH9 LEU A 1 UNP Q59N99 EXPRESSION TAG SEQADV 2HH9 MET B -12 UNP Q59N99 EXPRESSION TAG SEQADV 2HH9 ALA B -11 UNP Q59N99 EXPRESSION TAG SEQADV 2HH9 HIS B -10 UNP Q59N99 EXPRESSION TAG SEQADV 2HH9 HIS B -9 UNP Q59N99 EXPRESSION TAG SEQADV 2HH9 HIS B -8 UNP Q59N99 EXPRESSION TAG SEQADV 2HH9 HIS B -7 UNP Q59N99 EXPRESSION TAG SEQADV 2HH9 HIS B -6 UNP Q59N99 EXPRESSION TAG SEQADV 2HH9 HIS B -5 UNP Q59N99 EXPRESSION TAG SEQADV 2HH9 GLY B -4 UNP Q59N99 EXPRESSION TAG SEQADV 2HH9 HIS B -3 UNP Q59N99 EXPRESSION TAG SEQADV 2HH9 HIS B -2 UNP Q59N99 EXPRESSION TAG SEQADV 2HH9 HIS B -1 UNP Q59N99 EXPRESSION TAG SEQADV 2HH9 GLN B 0 UNP Q59N99 EXPRESSION TAG SEQADV 2HH9 LEU B 1 UNP Q59N99 EXPRESSION TAG SEQRES 1 A 339 MET ALA HIS HIS HIS HIS HIS HIS GLY HIS HIS HIS GLN SEQRES 2 A 339 LEU SER GLU ASP SER GLU LEU ILE GLU GLN VAL ILE GLU SEQRES 3 A 339 GLN PRO ASP SER LEU ILE ILE SER PRO PRO SER ASP SER SEQRES 4 A 339 SER SER SER SER TYR ASN HIS ILE GLN PRO PHE VAL TYR SEQRES 5 A 339 LEU GLU SER THR ALA THR THR GLN THR ASN HIS ASN VAL SEQRES 6 A 339 LEU LEU ILE LEU ASN GLN LYS ILE THR ILE ASP LEU ILE SEQRES 7 A 339 SER LEU TRP LYS LYS CYS GLU ILE ILE VAL CYS ALA ASP SEQRES 8 A 339 GLY GLY ALA ASN SER LEU TYR GLU TYR PHE ASN ASP ASN SEQRES 9 A 339 ASN HIS HIS HIS HIS HIS GLU ASN LEU GLN ARG SER ASP SEQRES 10 A 339 TYR ILE PRO ASP TYR ILE VAL GLY ASP PHE ASP SER ILE SEQRES 11 A 339 SER PRO ASP VAL LYS THR TYR TYR GLU SER HIS GLY SER SEQRES 12 A 339 LYS ILE ILE ARG GLN SER SER GLN TYR TYR ASN ASP PHE SEQRES 13 A 339 THR LYS SER ILE HIS CYS ILE GLN LEU HIS TYR GLN LEU SEQRES 14 A 339 ASN HIS THR LYS GLU ASN TRP PHE GLU SER ILE ASP GLU SEQRES 15 A 339 VAL ASP GLY LEU ALA LYS LEU TRP ASN GLY LEU ASN ASN SEQRES 16 A 339 SER SER ASP VAL VAL VAL ASP ILE ASP ILE THR ILE TYR SEQRES 17 A 339 VAL LEU ASN ALA ILE GLY GLY ARG PHE ASP GLN THR VAL SEQRES 18 A 339 GLN SER ILE ASN GLN LEU TYR ILE MET ASN GLU ASP TYR SEQRES 19 A 339 PRO LYS VAL THR VAL PHE PHE ILE THR THR ASN ASP ILE SEQRES 20 A 339 ILE PHE LEU LEU LYS LYS GLY VAL ASN TYR ILE SER TYR SEQRES 21 A 339 LYS ASN ARG LEU MET PHE HIS LYS ASP ASN GLY SER SER SEQRES 22 A 339 PRO THR PRO THR CYS GLY LEU LEU PRO LEU SER ASN LYS SEQRES 23 A 339 THR PRO ILE ILE LEU ASN SER TYR GLY LEU LYS TYR ASP SEQRES 24 A 339 MET ARG ASN TRP LYS THR GLU MET LEU GLY GLN VAL SER SEQRES 25 A 339 SER SER ASN ARG ILE SER GLY GLU THR GLY PHE ILE VAL SEQRES 26 A 339 GLU CYS SER ASP ASP ILE VAL MET ASN ILE GLU ILE ASP SEQRES 27 A 339 VAL SEQRES 1 B 339 MET ALA HIS HIS HIS HIS HIS HIS GLY HIS HIS HIS GLN SEQRES 2 B 339 LEU SER GLU ASP SER GLU LEU ILE GLU GLN VAL ILE GLU SEQRES 3 B 339 GLN PRO ASP SER LEU ILE ILE SER PRO PRO SER ASP SER SEQRES 4 B 339 SER SER SER SER TYR ASN HIS ILE GLN PRO PHE VAL TYR SEQRES 5 B 339 LEU GLU SER THR ALA THR THR GLN THR ASN HIS ASN VAL SEQRES 6 B 339 LEU LEU ILE LEU ASN GLN LYS ILE THR ILE ASP LEU ILE SEQRES 7 B 339 SER LEU TRP LYS LYS CYS GLU ILE ILE VAL CYS ALA ASP SEQRES 8 B 339 GLY GLY ALA ASN SER LEU TYR GLU TYR PHE ASN ASP ASN SEQRES 9 B 339 ASN HIS HIS HIS HIS HIS GLU ASN LEU GLN ARG SER ASP SEQRES 10 B 339 TYR ILE PRO ASP TYR ILE VAL GLY ASP PHE ASP SER ILE SEQRES 11 B 339 SER PRO ASP VAL LYS THR TYR TYR GLU SER HIS GLY SER SEQRES 12 B 339 LYS ILE ILE ARG GLN SER SER GLN TYR TYR ASN ASP PHE SEQRES 13 B 339 THR LYS SER ILE HIS CYS ILE GLN LEU HIS TYR GLN LEU SEQRES 14 B 339 ASN HIS THR LYS GLU ASN TRP PHE GLU SER ILE ASP GLU SEQRES 15 B 339 VAL ASP GLY LEU ALA LYS LEU TRP ASN GLY LEU ASN ASN SEQRES 16 B 339 SER SER ASP VAL VAL VAL ASP ILE ASP ILE THR ILE TYR SEQRES 17 B 339 VAL LEU ASN ALA ILE GLY GLY ARG PHE ASP GLN THR VAL SEQRES 18 B 339 GLN SER ILE ASN GLN LEU TYR ILE MET ASN GLU ASP TYR SEQRES 19 B 339 PRO LYS VAL THR VAL PHE PHE ILE THR THR ASN ASP ILE SEQRES 20 B 339 ILE PHE LEU LEU LYS LYS GLY VAL ASN TYR ILE SER TYR SEQRES 21 B 339 LYS ASN ARG LEU MET PHE HIS LYS ASP ASN GLY SER SER SEQRES 22 B 339 PRO THR PRO THR CYS GLY LEU LEU PRO LEU SER ASN LYS SEQRES 23 B 339 THR PRO ILE ILE LEU ASN SER TYR GLY LEU LYS TYR ASP SEQRES 24 B 339 MET ARG ASN TRP LYS THR GLU MET LEU GLY GLN VAL SER SEQRES 25 B 339 SER SER ASN ARG ILE SER GLY GLU THR GLY PHE ILE VAL SEQRES 26 B 339 GLU CYS SER ASP ASP ILE VAL MET ASN ILE GLU ILE ASP SEQRES 27 B 339 VAL HET MG A 802 1 HET MG A 804 1 HET VIB A 702 18 HET MG B 801 1 HET MG B 803 1 HET VIB B 701 18 HETNAM MG MAGNESIUM ION HETNAM VIB 3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-5-(2-HYDROXY- HETNAM 2 VIB ETHYL)-4-METHYL-THIAZOL-3-IUM HETSYN VIB THIAMIN; VITAMIN B1 FORMUL 3 MG 4(MG 2+) FORMUL 5 VIB 2(C12 H17 N4 O S 1+) FORMUL 9 HOH *660(H2 O) HELIX 1 1 PHE A 37 GLU A 41 5 5 HELIX 2 2 ASP A 63 LYS A 69 1 7 HELIX 3 3 GLY A 79 TYR A 87 1 9 HELIX 4 4 GLN A 101 TYR A 105 5 5 HELIX 5 5 SER A 118 HIS A 128 1 11 HELIX 6 6 ASN A 141 ASN A 157 1 17 HELIX 7 7 ASP A 171 ASN A 178 1 8 HELIX 8 8 ARG A 203 TYR A 221 1 19 HELIX 9 9 ASN A 249 PHE A 253 5 5 HELIX 10 10 ASP B 63 LYS B 70 1 8 HELIX 11 11 GLY B 79 GLU B 86 1 8 HELIX 12 12 TYR B 87 ASN B 89 5 3 HELIX 13 13 GLN B 101 TYR B 105 5 5 HELIX 14 14 SER B 118 HIS B 128 1 11 HELIX 15 15 ASN B 141 ASN B 157 1 17 HELIX 16 16 ASP B 171 GLY B 179 1 9 HELIX 17 17 ARG B 203 TYR B 221 1 19 HELIX 18 18 ASN B 249 PHE B 253 5 5 SHEET 1 A 2 GLN A 10 GLU A 13 0 SHEET 2 A 2 TYR A 285 ARG A 288 -1 O ASP A 286 N ILE A 12 SHEET 1 B 5 ASN A 32 ILE A 34 0 SHEET 2 B 5 GLY A 241 SER A 246 1 O VAL A 242 N ASN A 32 SHEET 3 B 5 GLY A 309 CYS A 314 -1 O CYS A 314 N GLY A 241 SHEET 4 B 5 ILE A 276 TYR A 281 -1 N ASN A 279 O GLU A 313 SHEET 5 B 5 TRP A 290 THR A 292 -1 O THR A 292 N ILE A 276 SHEET 1 C10 LYS A 131 ARG A 134 0 SHEET 2 C10 TYR A 109 GLY A 112 1 N ILE A 110 O ILE A 133 SHEET 3 C10 ILE A 73 ALA A 77 1 N CYS A 76 O TYR A 109 SHEET 4 C10 HIS A 50 ILE A 55 1 N LEU A 53 O VAL A 75 SHEET 5 C10 ILE A 192 LEU A 197 1 O TYR A 195 N VAL A 52 SHEET 6 C10 VAL A 224 ILE A 229 1 O THR A 225 N ILE A 192 SHEET 7 C10 ASP A 233 LEU A 238 -1 O ILE A 235 N PHE A 228 SHEET 8 C10 ILE A 318 GLU A 323 -1 O ILE A 318 N LEU A 238 SHEET 9 C10 THR A 264 LEU A 268 -1 N LEU A 268 O VAL A 319 SHEET 10 C10 SER A 299 ARG A 303 -1 O ASN A 302 N CYS A 265 SHEET 1 D 2 GLN B 10 GLU B 13 0 SHEET 2 D 2 TYR B 285 ARG B 288 -1 O ASP B 286 N ILE B 12 SHEET 1 E 5 ASN B 32 ILE B 34 0 SHEET 2 E 5 GLY B 241 SER B 246 1 O VAL B 242 N ASN B 32 SHEET 3 E 5 GLY B 309 CYS B 314 -1 O CYS B 314 N GLY B 241 SHEET 4 E 5 ILE B 276 TYR B 281 -1 N ASN B 279 O GLU B 313 SHEET 5 E 5 TRP B 290 THR B 292 -1 O THR B 292 N ILE B 276 SHEET 1 F10 LYS B 131 ARG B 134 0 SHEET 2 F10 TYR B 109 GLY B 112 1 N ILE B 110 O ILE B 133 SHEET 3 F10 ILE B 73 ALA B 77 1 N CYS B 76 O TYR B 109 SHEET 4 F10 HIS B 50 ILE B 55 1 N LEU B 53 O VAL B 75 SHEET 5 F10 ILE B 192 LEU B 197 1 O TYR B 195 N VAL B 52 SHEET 6 F10 VAL B 224 ILE B 229 1 O THR B 225 N ILE B 192 SHEET 7 F10 ASP B 233 LEU B 238 -1 O ILE B 235 N PHE B 228 SHEET 8 F10 ILE B 318 GLU B 323 -1 O ILE B 318 N LEU B 238 SHEET 9 F10 THR B 264 LEU B 268 -1 N LEU B 268 O VAL B 319 SHEET 10 F10 SER B 299 ARG B 303 -1 O ASN B 302 N CYS B 265 LINK OD2 ASP A 78 MG MG A 802 1555 1555 2.30 LINK OD1 ASP A 113 MG MG A 802 1555 1555 2.32 LINK OD2 ASP A 113 MG MG A 804 1555 1555 3.01 LINK OD1 ASP A 115 MG MG A 802 1555 1555 2.36 LINK OD1 ASP A 142 MG MG A 802 1555 1555 3.08 LINK OD2 ASP A 142 MG MG A 802 1555 1555 2.30 LINK OD1 ASP A 142 MG MG A 804 1555 1555 2.77 LINK NZ LYS A 145 MG MG A 804 1555 1555 2.74 LINK O1 VIB A 702 MG MG A 804 1555 1555 2.66 LINK MG MG A 802 O HOH A 844 1555 1555 2.44 LINK MG MG A 802 O HOH A 855 1555 1555 2.51 LINK OD2 ASP B 78 MG MG B 801 1555 1555 2.37 LINK OD1 ASP B 113 MG MG B 801 1555 1555 2.38 LINK OD2 ASP B 113 MG MG B 803 1555 1555 3.02 LINK OD1 ASP B 115 MG MG B 801 1555 1555 2.42 LINK OD2 ASP B 142 MG MG B 801 1555 1555 2.32 LINK OD1 ASP B 142 MG MG B 803 1555 1555 2.78 LINK NZ LYS B 145 MG MG B 803 1555 1555 2.81 LINK O1 VIB B 701 MG MG B 803 1555 1555 2.64 LINK MG MG B 801 O HOH B 808 1555 1555 2.41 LINK MG MG B 801 O HOH B 845 1555 1555 2.46 CISPEP 1 THR A 274 PRO A 275 0 -0.20 CISPEP 2 THR B 274 PRO B 275 0 -0.27 SITE 1 AC1 6 ASP B 78 ASP B 113 ASP B 115 ASP B 142 SITE 2 AC1 6 HOH B 808 HOH B 845 SITE 1 AC2 6 ASP A 78 ASP A 113 ASP A 115 ASP A 142 SITE 2 AC2 6 HOH A 844 HOH A 855 SITE 1 AC3 6 ASP B 113 TYR B 140 ASN B 141 ASP B 142 SITE 2 AC3 6 LYS B 145 VIB B 701 SITE 1 AC4 6 ASP A 113 TYR A 140 ASN A 141 ASP A 142 SITE 2 AC4 6 LYS A 145 VIB A 702 SITE 1 AC5 16 TYR A 285 MET A 287 SER A 299 SER A 300 SITE 2 AC5 16 SER A 301 HOH A 810 HOH A 865 ASP B 113 SITE 3 AC5 16 GLN B 138 TYR B 139 TYR B 140 ASN B 141 SITE 4 AC5 16 MG B 803 HOH B 808 HOH B 833 HOH B1061 SITE 1 AC6 14 ASP A 113 GLN A 138 TYR A 139 TYR A 140 SITE 2 AC6 14 MG A 804 HOH A 841 HOH A 855 TYR B 285 SITE 3 AC6 14 MET B 287 SER B 299 SER B 300 SER B 301 SITE 4 AC6 14 HOH B 838 HOH B1091 CRYST1 51.309 60.696 64.831 65.94 89.86 64.87 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019490 -0.009142 0.004543 0.00000 SCALE2 0.000000 0.018198 -0.009149 0.00000 SCALE3 0.000000 0.000000 0.017264 0.00000