HEADER OXIDOREDUCTASE 29-JUN-06 2HI7 TITLE CRYSTAL STRUCTURE OF DSBA-DSBB-UBIQUINONE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL:DISULFIDE INTERCHANGE PROTEIN DSBA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DSBA; COMPND 5 EC: 1.8.4.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DISULFIDE BOND FORMATION PROTEIN B; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: DSBB, DISULFIDE OXIDOREDUCTASE; COMPND 12 EC: 1.8.5.-; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PQE70 (QIAGEN); SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 10 ORGANISM_TAXID: 562; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PQE70 (QIAGEN) KEYWDS DISULFIDE BOND, REDOX, DSBB, MEMBRANE PROTEIN, UBIQUINONE, OXIDATIVE KEYWDS 2 PROTEIN FOLDING, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR K.INABA,S.MURAKAMI,M.SUZUKI,A.NAKAGAWA,E.YAMASHITA,K.OKADA,K.ITO REVDAT 4 20-NOV-24 2HI7 1 REMARK REVDAT 3 10-NOV-21 2HI7 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 2HI7 1 VERSN REVDAT 1 05-DEC-06 2HI7 0 JRNL AUTH K.INABA,S.MURAKAMI,M.SUZUKI,A.NAKAGAWA,E.YAMASHITA,K.OKADA, JRNL AUTH 2 K.ITO JRNL TITL CRYSTAL STRUCTURE OF THE DSBB-DSBA COMPLEX REVEALS A JRNL TITL 2 MECHANISM OF DISULFIDE BOND GENERATION JRNL REF CELL(CAMBRIDGE,MASS.) V. 127 789 2006 JRNL REFN ISSN 0092-8674 JRNL PMID 17110337 JRNL DOI 10.1016/J.CELL.2006.10.034 REMARK 2 REMARK 2 RESOLUTION. 3.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 9622 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.342 REMARK 3 R VALUE (WORKING SET) : 0.341 REMARK 3 FREE R VALUE : 0.362 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 488 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 4.04 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2181 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.3710 REMARK 3 BIN FREE R VALUE SET COUNT : 125 REMARK 3 BIN FREE R VALUE : 0.4190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2556 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 140.8 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 185.1 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.99000 REMARK 3 B22 (A**2) : 7.99000 REMARK 3 B33 (A**2) : -15.97000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.705 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.835 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 54.500 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.888 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2645 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3601 ; 1.556 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 319 ; 8.381 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 110 ;41.743 ;24.455 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 432 ;24.247 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;22.466 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 403 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1982 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1768 ; 0.293 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1768 ; 0.332 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 170 ; 0.245 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 25 ; 0.317 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 0.076 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1645 ; 0.784 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2593 ; 1.355 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1188 ; 0.946 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1008 ; 1.602 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2HI7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1000038375. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-SEP-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90000 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : RH-COATED MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER DIP-6040 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10332 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.700 REMARK 200 RESOLUTION RANGE LOW (A) : 61.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -4.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.52700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 77.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: JEFFAMIMEED2001, PH 7.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 82.75000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 82.75000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.96000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 82.75000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 82.75000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 32.96000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 82.75000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 82.75000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 32.96000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 82.75000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 82.75000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 32.96000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 ZN ZN A 190 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 189 REMARK 465 MET B 1 REMARK 465 LEU B 2 REMARK 465 ARG B 3 REMARK 465 PHE B 4 REMARK 465 LEU B 5 REMARK 465 ASN B 6 REMARK 465 GLN B 7 REMARK 465 ALA B 8 REMARK 465 SER B 9 REMARK 465 GLN B 10 REMARK 465 GLY B 11 REMARK 465 ARG B 12 REMARK 465 GLY B 13 REMARK 465 SER B 127 REMARK 465 GLY B 128 REMARK 465 ASP B 129 REMARK 465 SER B 130 REMARK 465 ALA B 131 REMARK 465 GLU B 132 REMARK 465 ARG B 133 REMARK 465 GLN B 134 REMARK 465 TRP B 135 REMARK 465 ASP B 136 REMARK 465 PHE B 137 REMARK 465 LEU B 138 REMARK 465 GLY B 139 REMARK 465 LEU B 140 REMARK 465 GLU B 141 REMARK 465 SER B 163 REMARK 465 GLN B 164 REMARK 465 PRO B 165 REMARK 465 PHE B 166 REMARK 465 LYS B 167 REMARK 465 ALA B 168 REMARK 465 LYS B 169 REMARK 465 LYS B 170 REMARK 465 ARG B 171 REMARK 465 ASP B 172 REMARK 465 LEU B 173 REMARK 465 PHE B 174 REMARK 465 GLY B 175 REMARK 465 ARG B 176 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O MET B 18 N ALA B 22 2.15 REMARK 500 OE1 GLU A 37 OG SER A 43 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 2 43.76 -164.50 REMARK 500 TYR A 3 101.83 -172.18 REMARK 500 LYS A 7 -75.97 -102.68 REMARK 500 PHE A 28 52.71 -94.78 REMARK 500 PHE A 29 -30.55 -156.21 REMARK 500 PHE A 36 -47.37 -29.71 REMARK 500 HIS A 41 12.25 57.13 REMARK 500 ILE A 42 -45.96 -29.77 REMARK 500 SER A 43 -73.78 -49.48 REMARK 500 LYS A 47 -36.09 -38.36 REMARK 500 PRO A 51 174.03 -51.60 REMARK 500 VAL A 78 -70.73 -47.02 REMARK 500 GLU A 85 -62.85 -24.89 REMARK 500 VAL A 88 -23.83 -140.66 REMARK 500 VAL A 96 -74.67 -71.94 REMARK 500 ARG A 103 -30.52 -139.20 REMARK 500 VAL A 135 -72.21 -51.51 REMARK 500 GLN A 137 -27.89 -39.28 REMARK 500 GLN A 138 -70.30 -91.34 REMARK 500 GLU A 139 -45.13 -23.70 REMARK 500 VAL A 145 39.77 -91.48 REMARK 500 GLN A 146 83.63 20.86 REMARK 500 ARG A 148 -50.03 -123.88 REMARK 500 ASN A 156 37.96 39.02 REMARK 500 MET A 171 -74.38 -58.65 REMARK 500 ASP A 172 -44.74 -23.78 REMARK 500 TYR A 178 -76.35 -68.79 REMARK 500 ALA A 179 -36.40 -36.06 REMARK 500 TRP B 15 -69.95 -11.30 REMARK 500 ALA B 24 -0.16 -58.64 REMARK 500 LEU B 25 -35.72 -132.52 REMARK 500 LEU B 30 -75.36 -51.60 REMARK 500 TRP B 31 -41.82 -18.78 REMARK 500 GLN B 33 -47.05 -25.68 REMARK 500 MET B 36 23.14 -61.76 REMARK 500 LEU B 37 -88.76 52.35 REMARK 500 LEU B 38 75.96 -172.18 REMARK 500 CYS B 41 133.88 176.15 REMARK 500 CYS B 44 -108.05 8.28 REMARK 500 LEU B 51 -87.43 -91.38 REMARK 500 ALA B 57 37.07 -91.04 REMARK 500 LEU B 59 -71.14 -64.66 REMARK 500 ALA B 64 179.15 48.11 REMARK 500 PRO B 68 33.77 -97.51 REMARK 500 LEU B 69 66.74 -167.01 REMARK 500 LEU B 78 -82.69 -63.57 REMARK 500 TYR B 79 6.12 -69.32 REMARK 500 SER B 80 -116.41 -66.46 REMARK 500 VAL B 85 -72.53 -61.08 REMARK 500 HIS B 91 -57.39 -22.97 REMARK 500 REMARK 500 THIS ENTRY HAS 65 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU B 114 PRO B 115 -144.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 190 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 HIS A 41 NE2 77.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 190 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UQ1 B 501 DBREF 2HI7 A 1 189 UNP P0AEG4 DSBA_ECOLI 20 208 DBREF 2HI7 B 1 176 UNP P0A6M2 DSBB_ECOLI 1 176 SEQADV 2HI7 ALA A 33 UNP P0AEG4 CYS 52 ENGINEERED MUTATION SEQADV 2HI7 ALA B 8 UNP P0A6M2 CYS 8 ENGINEERED MUTATION SEQADV 2HI7 VAL B 49 UNP P0A6M2 CYS 49 ENGINEERED MUTATION SEQADV 2HI7 SER B 130 UNP P0A6M2 CYS 130 ENGINEERED MUTATION SEQRES 1 A 189 ALA GLN TYR GLU ASP GLY LYS GLN TYR THR THR LEU GLU SEQRES 2 A 189 LYS PRO VAL ALA GLY ALA PRO GLN VAL LEU GLU PHE PHE SEQRES 3 A 189 SER PHE PHE CYS PRO HIS ALA TYR GLN PHE GLU GLU VAL SEQRES 4 A 189 LEU HIS ILE SER ASP ASN VAL LYS LYS LYS LEU PRO GLU SEQRES 5 A 189 GLY VAL LYS MET THR LYS TYR HIS VAL ASN PHE MET GLY SEQRES 6 A 189 GLY ASP LEU GLY LYS ASP LEU THR GLN ALA TRP ALA VAL SEQRES 7 A 189 ALA MET ALA LEU GLY VAL GLU ASP LYS VAL THR VAL PRO SEQRES 8 A 189 LEU PHE GLU GLY VAL GLN LYS THR GLN THR ILE ARG SER SEQRES 9 A 189 ALA SER ASP ILE ARG ASP VAL PHE ILE ASN ALA GLY ILE SEQRES 10 A 189 LYS GLY GLU GLU TYR ASP ALA ALA TRP ASN SER PHE VAL SEQRES 11 A 189 VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA ALA SEQRES 12 A 189 ASP VAL GLN LEU ARG GLY VAL PRO ALA MET PHE VAL ASN SEQRES 13 A 189 GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SER SEQRES 14 A 189 ASN MET ASP VAL PHE VAL GLN GLN TYR ALA ASP THR VAL SEQRES 15 A 189 LYS TYR LEU SER GLU LYS LYS SEQRES 1 B 176 MET LEU ARG PHE LEU ASN GLN ALA SER GLN GLY ARG GLY SEQRES 2 B 176 ALA TRP LEU LEU MET ALA PHE THR ALA LEU ALA LEU GLU SEQRES 3 B 176 LEU THR ALA LEU TRP PHE GLN HIS VAL MET LEU LEU LYS SEQRES 4 B 176 PRO CYS VAL LEU CYS ILE TYR GLU ARG VAL ALA LEU PHE SEQRES 5 B 176 GLY VAL LEU GLY ALA ALA LEU ILE GLY ALA ILE ALA PRO SEQRES 6 B 176 LYS THR PRO LEU ARG TYR VAL ALA MET VAL ILE TRP LEU SEQRES 7 B 176 TYR SER ALA PHE ARG GLY VAL GLN LEU THR TYR GLU HIS SEQRES 8 B 176 THR MET LEU GLN LEU TYR PRO SER PRO PHE ALA THR CYS SEQRES 9 B 176 ASP PHE MET VAL ARG PHE PRO GLU TRP LEU PRO LEU ASP SEQRES 10 B 176 LYS TRP VAL PRO GLN VAL PHE VAL ALA SER GLY ASP SER SEQRES 11 B 176 ALA GLU ARG GLN TRP ASP PHE LEU GLY LEU GLU MET PRO SEQRES 12 B 176 GLN TRP LEU LEU GLY ILE PHE ILE ALA TYR LEU ILE VAL SEQRES 13 B 176 ALA VAL LEU VAL VAL ILE SER GLN PRO PHE LYS ALA LYS SEQRES 14 B 176 LYS ARG ASP LEU PHE GLY ARG HET ZN A 190 1 HET UQ1 B 501 18 HETNAM ZN ZINC ION HETNAM UQ1 UBIQUINONE-1 FORMUL 3 ZN ZN 2+ FORMUL 4 UQ1 C14 H18 O4 HELIX 1 1 CYS A 30 VAL A 39 1 10 HELIX 2 2 HIS A 41 LEU A 50 1 10 HELIX 3 3 GLY A 65 LEU A 82 1 18 HELIX 4 4 VAL A 84 LYS A 87 5 4 HELIX 5 5 VAL A 88 GLN A 97 1 10 HELIX 6 6 SER A 104 GLY A 116 1 13 HELIX 7 7 GLU A 120 ALA A 125 1 6 HELIX 8 8 SER A 128 VAL A 145 1 18 HELIX 9 9 PRO A 163 MET A 166 5 4 HELIX 10 10 ASN A 170 GLU A 187 1 18 HELIX 11 11 ALA B 14 HIS B 34 1 21 HELIX 12 12 VAL B 42 GLY B 53 1 12 HELIX 13 13 LEU B 55 ILE B 60 1 6 HELIX 14 14 ARG B 70 TRP B 77 1 8 HELIX 15 15 LEU B 78 GLN B 95 1 18 HELIX 16 16 LEU B 114 TRP B 119 5 6 HELIX 17 17 GLN B 122 ALA B 126 5 5 HELIX 18 18 MET B 142 VAL B 160 1 19 SHEET 1 A 5 TYR A 9 THR A 11 0 SHEET 2 A 5 TYR A 159 LEU A 161 -1 O GLN A 160 N THR A 10 SHEET 3 A 5 ALA A 152 VAL A 155 -1 N VAL A 155 O TYR A 159 SHEET 4 A 5 VAL A 22 PHE A 26 -1 N PHE A 25 O ALA A 152 SHEET 5 A 5 MET A 56 HIS A 60 1 O THR A 57 N VAL A 22 SSBOND 1 CYS A 30 CYS B 104 1555 1555 2.01 SSBOND 2 CYS B 41 CYS B 44 1555 1555 2.05 LINK NE2 HIS A 41 ZN ZN A 190 1555 1555 2.42 LINK NE2 HIS A 41 ZN ZN A 190 7555 1555 2.42 CISPEP 1 VAL A 150 PRO A 151 0 -10.39 SITE 1 AC1 2 GLU A 38 HIS A 41 SITE 1 AC2 10 ALA B 29 LYS B 39 CYS B 41 LEU B 43 SITE 2 AC2 10 CYS B 44 GLU B 47 ARG B 48 HIS B 91 SITE 3 AC2 10 MET B 142 LEU B 146 CRYST1 165.500 165.500 65.920 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006042 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006042 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015170 0.00000