HEADER HYDROLASE 29-JUN-06 2HIH TITLE CRYSTAL STRUCTURE OF STAPHYLOCOCCUS HYICUS LIPASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPASE 46 KDA FORM; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.1.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS HYICUS; SOURCE 3 ORGANISM_TAXID: 1284; SOURCE 4 GENE: LIP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE 3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PSHT7 KEYWDS LIPASE, A1 PHOSPHOLIPASE, PHOSPHOLIPID BINDING, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.J.W.TIESINGA,G.VAN POUDEROYEN,M.NARDINI,B.W.DIJKSTRA REVDAT 4 25-OCT-23 2HIH 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 2HIH 1 VERSN REVDAT 2 10-FEB-09 2HIH 1 VERSN JRNL REVDAT 1 22-MAY-07 2HIH 0 JRNL AUTH J.J.TIESINGA,G.VAN POUDEROYEN,M.NARDINI,S.RANSAC, JRNL AUTH 2 B.W.DIJKSTRA JRNL TITL STRUCTURAL BASIS OF PHOSPHOLIPASE ACTIVITY OF STAPHYLOCOCCUS JRNL TITL 2 HYICUS LIPASE. JRNL REF J.MOL.BIOL. V. 371 447 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17582438 JRNL DOI 10.1016/J.JMB.2007.05.041 REMARK 2 REMARK 2 RESOLUTION. 2.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 22929 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2322 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.86 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.93 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1498 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 165 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6143 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 26 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.428 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.266 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.948 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.900 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.846 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6302 ; 0.005 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 5348 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8526 ; 0.786 ; 1.925 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12512 ; 0.584 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 771 ; 4.783 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 320 ;35.146 ;24.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1045 ;19.114 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;18.157 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 882 ; 0.049 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7143 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1305 ; 0.000 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1368 ; 0.202 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 5376 ; 0.192 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3027 ; 0.190 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 3573 ; 0.088 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 279 ; 0.216 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 10 ; 0.130 ; 0.500 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 5 ; 0.172 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 24 ; 0.231 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.126 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3912 ; 0.164 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1606 ; 0.030 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6103 ; 0.286 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2756 ; 0.355 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2423 ; 0.582 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 12 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 29 A 35 4 REMARK 3 1 B 29 B 35 4 REMARK 3 2 A 7 A 11 4 REMARK 3 2 B 7 B 11 4 REMARK 3 3 A 40 A 84 4 REMARK 3 3 B 40 B 84 4 REMARK 3 4 A 201 A 221 4 REMARK 3 4 B 201 B 221 4 REMARK 3 5 A 283 A 326 4 REMARK 3 5 B 283 B 326 4 REMARK 3 6 A 329 A 337 4 REMARK 3 6 B 329 B 337 4 REMARK 3 7 A 368 A 392 4 REMARK 3 7 B 368 B 392 4 REMARK 3 8 A 14 A 25 4 REMARK 3 8 B 14 B 25 4 REMARK 3 9 A 86 A 198 4 REMARK 3 9 B 86 B 198 4 REMARK 3 10 A 223 A 258 4 REMARK 3 10 B 223 B 258 4 REMARK 3 11 A 339 A 366 4 REMARK 3 11 B 339 B 366 4 REMARK 3 12 A 260 A 278 4 REMARK 3 12 B 260 B 278 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 5415 ; 0.180 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 5415 ; 0.140 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2HIH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1000038382. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-AUG-94 REMARK 200 TEMPERATURE (KELVIN) : 277 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X31 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22929 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.860 REMARK 200 RESOLUTION RANGE LOW (A) : 26.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08800 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1JI3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NACL, NA SUCCINATE, DMSO, ISOPROPANOL, REMARK 280 PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.65500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.90500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.98000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 84.90500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.65500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.98000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 2820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -34 REMARK 465 ALA A -33 REMARK 465 ARG A -32 REMARK 465 ILE A -31 REMARK 465 ARG A -30 REMARK 465 ALA A -29 REMARK 465 ARG A -28 REMARK 465 GLY A -27 REMARK 465 SER A -26 REMARK 465 SER A -25 REMARK 465 ARG A -24 REMARK 465 VAL A -23 REMARK 465 ASP A -22 REMARK 465 VAL A -21 REMARK 465 PRO A -20 REMARK 465 LYS A -19 REMARK 465 GLU A -18 REMARK 465 ASN A -17 REMARK 465 THR A -16 REMARK 465 THR A -15 REMARK 465 ALA A -14 REMARK 465 GLN A -13 REMARK 465 ASN A -12 REMARK 465 LYS A -11 REMARK 465 PHE A -10 REMARK 465 THR A -9 REMARK 465 SER A -8 REMARK 465 GLN A -7 REMARK 465 ALA A -6 REMARK 465 SER A -5 REMARK 465 ASP A -4 REMARK 465 LYS A -3 REMARK 465 LYS A -2 REMARK 465 PRO A -1 REMARK 465 THR A 0 REMARK 465 VAL A 1 REMARK 465 LYS A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 PRO A 5 REMARK 465 GLU A 6 REMARK 465 LYS A 394 REMARK 465 ASN A 395 REMARK 465 ALA A 396 REMARK 465 MET B -34 REMARK 465 ALA B -33 REMARK 465 ARG B -32 REMARK 465 ILE B -31 REMARK 465 ARG B -30 REMARK 465 ALA B -29 REMARK 465 ARG B -28 REMARK 465 GLY B -27 REMARK 465 SER B -26 REMARK 465 SER B -25 REMARK 465 ARG B -24 REMARK 465 VAL B -23 REMARK 465 ASP B -22 REMARK 465 VAL B -21 REMARK 465 PRO B -20 REMARK 465 LYS B -19 REMARK 465 GLU B -18 REMARK 465 ASN B -17 REMARK 465 THR B -16 REMARK 465 THR B -15 REMARK 465 ALA B -14 REMARK 465 GLN B -13 REMARK 465 ASN B -12 REMARK 465 LYS B -11 REMARK 465 PHE B -10 REMARK 465 THR B -9 REMARK 465 SER B -8 REMARK 465 GLN B -7 REMARK 465 ALA B -6 REMARK 465 SER B -5 REMARK 465 ASP B -4 REMARK 465 LYS B -3 REMARK 465 LYS B -2 REMARK 465 PRO B -1 REMARK 465 THR B 0 REMARK 465 VAL B 1 REMARK 465 LYS B 2 REMARK 465 ALA B 3 REMARK 465 ALA B 4 REMARK 465 PRO B 5 REMARK 465 GLU B 6 REMARK 465 THR B 393 REMARK 465 LYS B 394 REMARK 465 ASN B 395 REMARK 465 ALA B 396 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 36 -88.29 3.03 REMARK 500 LYS A 103 -178.82 -68.73 REMARK 500 SER A 124 -131.38 57.22 REMARK 500 ILE A 186 -66.76 -130.69 REMARK 500 THR A 280 -149.02 -141.56 REMARK 500 LEU A 316 -39.29 -142.04 REMARK 500 ASN A 361 31.19 -94.55 REMARK 500 ALA B 35 -169.35 -79.35 REMARK 500 LYS B 36 -80.47 -46.90 REMARK 500 SER B 124 -133.52 59.59 REMARK 500 ILE B 186 -64.23 -129.58 REMARK 500 ASP B 307 95.08 -66.69 REMARK 500 LEU B 316 -39.50 -150.76 REMARK 500 SER B 326 -73.06 -51.54 REMARK 500 ASN B 361 39.34 -95.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 72 OE1 REMARK 620 2 GLU A 72 OE2 54.3 REMARK 620 3 HIS A 92 NE2 135.9 90.3 REMARK 620 4 HIS A 98 NE2 100.8 91.0 105.7 REMARK 620 5 ASP A 243 OD2 101.6 155.2 107.3 100.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 603 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 290 O REMARK 620 2 ASP A 354 OD2 96.3 REMARK 620 3 ASP A 357 OD2 146.9 85.3 REMARK 620 4 ASP A 357 OD1 156.3 103.3 49.7 REMARK 620 5 ASP A 362 OD2 77.4 97.0 135.5 87.0 REMARK 620 6 ASP A 365 OD2 75.6 159.4 91.4 89.7 99.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 72 OE2 REMARK 620 2 GLU B 72 OE1 59.0 REMARK 620 3 HIS B 92 NE2 86.0 132.3 REMARK 620 4 HIS B 98 NE2 94.1 111.8 101.2 REMARK 620 5 ASP B 243 OD2 161.4 102.9 106.1 97.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1603 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 290 O REMARK 620 2 ASP B 354 OD2 97.0 REMARK 620 3 ASP B 357 OD1 158.5 89.3 REMARK 620 4 ASP B 357 OD2 153.7 78.9 47.7 REMARK 620 5 ASP B 362 OD2 79.3 87.6 80.5 126.0 REMARK 620 6 ASP B 365 OD2 83.3 171.4 93.5 97.0 100.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1603 DBREF 2HIH A -23 396 UNP P04635 LIP_STAHY 222 641 DBREF 2HIH B -23 396 UNP P04635 LIP_STAHY 222 641 SEQADV 2HIH MET A -34 UNP P04635 CLONING ARTIFACT SEQADV 2HIH ALA A -33 UNP P04635 CLONING ARTIFACT SEQADV 2HIH ARG A -32 UNP P04635 CLONING ARTIFACT SEQADV 2HIH ILE A -31 UNP P04635 CLONING ARTIFACT SEQADV 2HIH ARG A -30 UNP P04635 CLONING ARTIFACT SEQADV 2HIH ALA A -29 UNP P04635 CLONING ARTIFACT SEQADV 2HIH ARG A -28 UNP P04635 CLONING ARTIFACT SEQADV 2HIH GLY A -27 UNP P04635 CLONING ARTIFACT SEQADV 2HIH SER A -26 UNP P04635 CLONING ARTIFACT SEQADV 2HIH SER A -25 UNP P04635 CLONING ARTIFACT SEQADV 2HIH ARG A -24 UNP P04635 CLONING ARTIFACT SEQADV 2HIH TYR A 40 UNP P04635 HIS 285 SEE REMARK 999 SEQADV 2HIH MET B -34 UNP P04635 CLONING ARTIFACT SEQADV 2HIH ALA B -33 UNP P04635 CLONING ARTIFACT SEQADV 2HIH ARG B -32 UNP P04635 CLONING ARTIFACT SEQADV 2HIH ILE B -31 UNP P04635 CLONING ARTIFACT SEQADV 2HIH ARG B -30 UNP P04635 CLONING ARTIFACT SEQADV 2HIH ALA B -29 UNP P04635 CLONING ARTIFACT SEQADV 2HIH ARG B -28 UNP P04635 CLONING ARTIFACT SEQADV 2HIH GLY B -27 UNP P04635 CLONING ARTIFACT SEQADV 2HIH SER B -26 UNP P04635 CLONING ARTIFACT SEQADV 2HIH SER B -25 UNP P04635 CLONING ARTIFACT SEQADV 2HIH ARG B -24 UNP P04635 CLONING ARTIFACT SEQADV 2HIH TYR B 40 UNP P04635 HIS 285 SEE REMARK 999 SEQRES 1 A 431 MET ALA ARG ILE ARG ALA ARG GLY SER SER ARG VAL ASP SEQRES 2 A 431 VAL PRO LYS GLU ASN THR THR ALA GLN ASN LYS PHE THR SEQRES 3 A 431 SER GLN ALA SER ASP LYS LYS PRO THR VAL LYS ALA ALA SEQRES 4 A 431 PRO GLU ALA VAL GLN ASN PRO GLU ASN PRO LYS ASN LYS SEQRES 5 A 431 ASP PRO PHE VAL PHE VAL HIS GLY PHE THR GLY PHE VAL SEQRES 6 A 431 GLY GLU VAL ALA ALA LYS GLY GLU ASN TYR TRP GLY GLY SEQRES 7 A 431 THR LYS ALA ASN LEU ARG ASN HIS LEU ARG LYS ALA GLY SEQRES 8 A 431 TYR GLU THR TYR GLU ALA SER VAL SER ALA LEU ALA SER SEQRES 9 A 431 ASN HIS GLU ARG ALA VAL GLU LEU TYR TYR TYR LEU LYS SEQRES 10 A 431 GLY GLY ARG VAL ASP TYR GLY ALA ALA HIS SER GLU LYS SEQRES 11 A 431 TYR GLY HIS GLU ARG TYR GLY LYS THR TYR GLU GLY VAL SEQRES 12 A 431 LEU LYS ASP TRP LYS PRO GLY HIS PRO VAL HIS PHE ILE SEQRES 13 A 431 GLY HIS SER MET GLY GLY GLN THR ILE ARG LEU LEU GLU SEQRES 14 A 431 HIS TYR LEU ARG PHE GLY ASP LYS ALA GLU ILE ALA TYR SEQRES 15 A 431 GLN GLN GLN HIS GLY GLY ILE ILE SER GLU LEU PHE LYS SEQRES 16 A 431 GLY GLY GLN ASP ASN MET VAL THR SER ILE THR THR ILE SEQRES 17 A 431 ALA THR PRO HIS ASN GLY THR HIS ALA SER ASP ASP ILE SEQRES 18 A 431 GLY ASN THR PRO THR ILE ARG ASN ILE LEU TYR SER PHE SEQRES 19 A 431 ALA GLN MET SER SER HIS LEU GLY THR ILE ASP PHE GLY SEQRES 20 A 431 MET ASP HIS TRP GLY PHE LYS ARG LYS ASP GLY GLU SER SEQRES 21 A 431 LEU THR ASP TYR ASN LYS ARG ILE ALA GLU SER LYS ILE SEQRES 22 A 431 TRP ASP SER GLU ASP THR GLY LEU TYR ASP LEU THR ARG SEQRES 23 A 431 GLU GLY ALA GLU LYS ILE ASN GLN LYS THR GLU LEU ASN SEQRES 24 A 431 PRO ASN ILE TYR TYR LYS THR TYR THR GLY VAL ALA THR SEQRES 25 A 431 HIS GLU THR GLN LEU GLY LYS HIS ILE ALA ASP LEU GLY SEQRES 26 A 431 MET GLU PHE THR LYS ILE LEU THR GLY ASN TYR ILE GLY SEQRES 27 A 431 SER VAL ASP ASP ILE LEU TRP ARG PRO ASN ASP GLY LEU SEQRES 28 A 431 VAL SER GLU ILE SER SER GLN HIS PRO SER ASP GLU LYS SEQRES 29 A 431 ASN ILE SER VAL ASP GLU ASN SER GLU LEU HIS LYS GLY SEQRES 30 A 431 THR TRP GLN VAL MET PRO THR MET LYS GLY TRP ASP HIS SEQRES 31 A 431 SER ASP PHE ILE GLY ASN ASP ALA LEU ASP THR LYS HIS SEQRES 32 A 431 SER ALA ILE GLU LEU THR ASN PHE TYR HIS SER ILE SER SEQRES 33 A 431 ASP TYR LEU MET ARG ILE GLU LYS ALA GLU SER THR LYS SEQRES 34 A 431 ASN ALA SEQRES 1 B 431 MET ALA ARG ILE ARG ALA ARG GLY SER SER ARG VAL ASP SEQRES 2 B 431 VAL PRO LYS GLU ASN THR THR ALA GLN ASN LYS PHE THR SEQRES 3 B 431 SER GLN ALA SER ASP LYS LYS PRO THR VAL LYS ALA ALA SEQRES 4 B 431 PRO GLU ALA VAL GLN ASN PRO GLU ASN PRO LYS ASN LYS SEQRES 5 B 431 ASP PRO PHE VAL PHE VAL HIS GLY PHE THR GLY PHE VAL SEQRES 6 B 431 GLY GLU VAL ALA ALA LYS GLY GLU ASN TYR TRP GLY GLY SEQRES 7 B 431 THR LYS ALA ASN LEU ARG ASN HIS LEU ARG LYS ALA GLY SEQRES 8 B 431 TYR GLU THR TYR GLU ALA SER VAL SER ALA LEU ALA SER SEQRES 9 B 431 ASN HIS GLU ARG ALA VAL GLU LEU TYR TYR TYR LEU LYS SEQRES 10 B 431 GLY GLY ARG VAL ASP TYR GLY ALA ALA HIS SER GLU LYS SEQRES 11 B 431 TYR GLY HIS GLU ARG TYR GLY LYS THR TYR GLU GLY VAL SEQRES 12 B 431 LEU LYS ASP TRP LYS PRO GLY HIS PRO VAL HIS PHE ILE SEQRES 13 B 431 GLY HIS SER MET GLY GLY GLN THR ILE ARG LEU LEU GLU SEQRES 14 B 431 HIS TYR LEU ARG PHE GLY ASP LYS ALA GLU ILE ALA TYR SEQRES 15 B 431 GLN GLN GLN HIS GLY GLY ILE ILE SER GLU LEU PHE LYS SEQRES 16 B 431 GLY GLY GLN ASP ASN MET VAL THR SER ILE THR THR ILE SEQRES 17 B 431 ALA THR PRO HIS ASN GLY THR HIS ALA SER ASP ASP ILE SEQRES 18 B 431 GLY ASN THR PRO THR ILE ARG ASN ILE LEU TYR SER PHE SEQRES 19 B 431 ALA GLN MET SER SER HIS LEU GLY THR ILE ASP PHE GLY SEQRES 20 B 431 MET ASP HIS TRP GLY PHE LYS ARG LYS ASP GLY GLU SER SEQRES 21 B 431 LEU THR ASP TYR ASN LYS ARG ILE ALA GLU SER LYS ILE SEQRES 22 B 431 TRP ASP SER GLU ASP THR GLY LEU TYR ASP LEU THR ARG SEQRES 23 B 431 GLU GLY ALA GLU LYS ILE ASN GLN LYS THR GLU LEU ASN SEQRES 24 B 431 PRO ASN ILE TYR TYR LYS THR TYR THR GLY VAL ALA THR SEQRES 25 B 431 HIS GLU THR GLN LEU GLY LYS HIS ILE ALA ASP LEU GLY SEQRES 26 B 431 MET GLU PHE THR LYS ILE LEU THR GLY ASN TYR ILE GLY SEQRES 27 B 431 SER VAL ASP ASP ILE LEU TRP ARG PRO ASN ASP GLY LEU SEQRES 28 B 431 VAL SER GLU ILE SER SER GLN HIS PRO SER ASP GLU LYS SEQRES 29 B 431 ASN ILE SER VAL ASP GLU ASN SER GLU LEU HIS LYS GLY SEQRES 30 B 431 THR TRP GLN VAL MET PRO THR MET LYS GLY TRP ASP HIS SEQRES 31 B 431 SER ASP PHE ILE GLY ASN ASP ALA LEU ASP THR LYS HIS SEQRES 32 B 431 SER ALA ILE GLU LEU THR ASN PHE TYR HIS SER ILE SER SEQRES 33 B 431 ASP TYR LEU MET ARG ILE GLU LYS ALA GLU SER THR LYS SEQRES 34 B 431 ASN ALA HET ZN A 601 1 HET CA A 603 1 HET ZN B1601 1 HET CA B1603 1 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION FORMUL 3 ZN 2(ZN 2+) FORMUL 4 CA 2(CA 2+) FORMUL 7 HOH *26(H2 O) HELIX 1 1 VAL A 30 ALA A 34 5 5 HELIX 2 2 ASN A 47 ALA A 55 1 9 HELIX 3 3 SER A 69 GLY A 83 1 15 HELIX 4 4 GLY A 89 GLY A 97 1 9 HELIX 5 5 MET A 125 GLY A 140 1 16 HELIX 6 6 ASP A 141 GLY A 152 1 12 HELIX 7 7 SER A 156 GLY A 161 1 6 HELIX 8 8 THR A 180 ASP A 185 1 6 HELIX 9 9 THR A 189 LEU A 206 1 18 HELIX 10 10 MET A 213 GLY A 217 5 5 HELIX 11 11 SER A 225 SER A 236 1 12 HELIX 12 12 LYS A 237 ASP A 240 5 4 HELIX 13 13 THR A 244 LEU A 249 1 6 HELIX 14 14 THR A 250 THR A 261 1 12 HELIX 15 15 GLN A 281 GLY A 283 5 3 HELIX 16 16 GLU A 292 THR A 294 5 3 HELIX 17 17 LYS A 295 GLY A 303 1 9 HELIX 18 18 ASP A 307 ARG A 311 5 5 HELIX 19 19 SER A 318 HIS A 324 1 7 HELIX 20 20 SER A 356 GLY A 360 5 5 HELIX 21 21 SER A 369 THR A 393 1 25 HELIX 22 22 ASN B 47 ALA B 55 1 9 HELIX 23 23 SER B 69 GLY B 83 1 15 HELIX 24 24 GLY B 89 GLY B 97 1 9 HELIX 25 25 MET B 125 GLY B 140 1 16 HELIX 26 26 ASP B 141 HIS B 151 1 11 HELIX 27 27 SER B 156 GLY B 161 1 6 HELIX 28 28 THR B 180 ILE B 186 1 7 HELIX 29 29 THR B 189 GLY B 207 1 19 HELIX 30 30 MET B 213 GLY B 217 5 5 HELIX 31 31 SER B 225 SER B 236 1 12 HELIX 32 32 LYS B 237 ASP B 240 5 4 HELIX 33 33 THR B 244 LEU B 249 1 6 HELIX 34 34 THR B 250 THR B 261 1 12 HELIX 35 35 GLU B 292 THR B 294 5 3 HELIX 36 36 LYS B 295 GLY B 303 1 9 HELIX 37 37 ASP B 307 ARG B 311 5 5 HELIX 38 38 SER B 318 GLN B 323 1 6 HELIX 39 39 SER B 356 GLY B 360 5 5 HELIX 40 40 SER B 369 SER B 392 1 24 SHEET 1 A 7 THR A 59 ALA A 62 0 SHEET 2 A 7 PHE A 20 VAL A 23 1 N PHE A 22 O TYR A 60 SHEET 3 A 7 VAL A 118 HIS A 123 1 O HIS A 119 N VAL A 21 SHEET 4 A 7 VAL A 167 ILE A 173 1 O THR A 168 N VAL A 118 SHEET 5 A 7 TYR A 268 TYR A 272 1 O TYR A 268 N ILE A 170 SHEET 6 A 7 TRP A 344 VAL A 346 1 O GLN A 345 N THR A 271 SHEET 7 A 7 ASN A 330 SER A 332 1 N ILE A 331 O TRP A 344 SHEET 1 B 2 GLY A 84 ASP A 87 0 SHEET 2 B 2 TYR A 101 TYR A 105 -1 O LYS A 103 N VAL A 86 SHEET 1 C 2 GLY A 274 VAL A 275 0 SHEET 2 C 2 MET A 350 LYS A 351 1 O MET A 350 N VAL A 275 SHEET 1 D 2 THR A 277 GLU A 279 0 SHEET 2 D 2 HIS A 285 ALA A 287 -1 O ILE A 286 N HIS A 278 SHEET 1 E 7 THR B 59 ALA B 62 0 SHEET 2 E 7 PHE B 20 VAL B 23 1 N PHE B 22 O TYR B 60 SHEET 3 E 7 VAL B 118 HIS B 123 1 O ILE B 121 N VAL B 21 SHEET 4 E 7 VAL B 167 ILE B 173 1 O SER B 169 N PHE B 120 SHEET 5 E 7 TYR B 268 TYR B 272 1 O LYS B 270 N THR B 172 SHEET 6 E 7 TRP B 344 VAL B 346 1 O GLN B 345 N THR B 271 SHEET 7 E 7 ASN B 330 SER B 332 1 N ILE B 331 O VAL B 346 SHEET 1 F 2 GLY B 84 ASP B 87 0 SHEET 2 F 2 TYR B 101 TYR B 105 -1 O LYS B 103 N VAL B 86 SHEET 1 G 2 GLY B 274 VAL B 275 0 SHEET 2 G 2 MET B 350 LYS B 351 1 O MET B 350 N VAL B 275 SHEET 1 H 2 THR B 277 GLU B 279 0 SHEET 2 H 2 HIS B 285 ALA B 287 -1 O ILE B 286 N HIS B 278 LINK OE1 GLU A 72 ZN ZN A 601 1555 1555 2.00 LINK OE2 GLU A 72 ZN ZN A 601 1555 1555 2.64 LINK NE2 HIS A 92 ZN ZN A 601 1555 1555 2.12 LINK NE2 HIS A 98 ZN ZN A 601 1555 1555 2.28 LINK OD2 ASP A 243 ZN ZN A 601 1555 1555 1.85 LINK O GLY A 290 CA CA A 603 1555 1555 2.41 LINK OD2 ASP A 354 CA CA A 603 1555 1555 2.41 LINK OD2 ASP A 357 CA CA A 603 1555 1555 2.44 LINK OD1 ASP A 357 CA CA A 603 1555 1555 2.74 LINK OD2 ASP A 362 CA CA A 603 1555 1555 2.37 LINK OD2 ASP A 365 CA CA A 603 1555 1555 2.58 LINK OE2 GLU B 72 ZN ZN B1601 1555 1555 2.34 LINK OE1 GLU B 72 ZN ZN B1601 1555 1555 2.08 LINK NE2 HIS B 92 ZN ZN B1601 1555 1555 2.04 LINK NE2 HIS B 98 ZN ZN B1601 1555 1555 2.31 LINK OD2 ASP B 243 ZN ZN B1601 1555 1555 1.78 LINK O GLY B 290 CA CA B1603 1555 1555 2.27 LINK OD2 ASP B 354 CA CA B1603 1555 1555 2.19 LINK OD1 ASP B 357 CA CA B1603 1555 1555 2.89 LINK OD2 ASP B 357 CA CA B1603 1555 1555 2.44 LINK OD2 ASP B 362 CA CA B1603 1555 1555 2.58 LINK OD2 ASP B 365 CA CA B1603 1555 1555 2.39 SITE 1 AC1 4 GLU A 72 HIS A 92 HIS A 98 ASP A 243 SITE 1 AC2 5 GLY A 290 ASP A 354 ASP A 357 ASP A 362 SITE 2 AC2 5 ASP A 365 SITE 1 AC3 4 GLU B 72 HIS B 92 HIS B 98 ASP B 243 SITE 1 AC4 5 GLY B 290 ASP B 354 ASP B 357 ASP B 362 SITE 2 AC4 5 ASP B 365 CRYST1 73.310 77.960 169.810 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013641 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012827 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005889 0.00000