HEADER LIGASE 29-JUN-06 2HIV TITLE ATP-DEPENDENT DNA LIGASE FROM S. SOLFATARICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMOSTABLE DNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: POLYDEOXYRIBONUCLEOTIDE SYNTHASE; COMPND 5 EC: 6.5.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 2287; SOURCE 4 GENE: LIG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA LIGASE, ATP-DEPENDENT, OPEN CONFORMATION, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR J.M.PASCAL,T.ELLENBERGER REVDAT 5 14-FEB-24 2HIV 1 SEQADV REVDAT 4 18-OCT-17 2HIV 1 REMARK REVDAT 3 13-JUL-11 2HIV 1 VERSN REVDAT 2 24-FEB-09 2HIV 1 VERSN REVDAT 1 07-NOV-06 2HIV 0 JRNL AUTH J.M.PASCAL,O.V.TSODIKOV,G.L.HURA,W.SONG,E.A.COTNER, JRNL AUTH 2 S.CLASSEN,A.E.TOMKINSON,J.A.TAINER,T.ELLENBERGER JRNL TITL A FLEXIBLE INTERFACE BETWEEN DNA LIGASE AND PCNA SUPPORTS JRNL TITL 2 CONFORMATIONAL SWITCHING AND EFFICIENT LIGATION OF DNA. JRNL REF MOL.CELL V. 24 279 2006 JRNL REFN ISSN 1097-2765 JRNL PMID 17052461 JRNL DOI 10.1016/J.MOLCEL.2006.08.015 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 48093 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2422 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2167 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 63.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 116 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4566 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 225 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.67000 REMARK 3 B22 (A**2) : -1.47000 REMARK 3 B33 (A**2) : 0.80000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.189 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.174 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.124 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.826 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4696 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6334 ; 1.493 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 587 ; 5.788 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 208 ;35.186 ;24.279 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 900 ;17.715 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;20.428 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 709 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3470 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2549 ; 0.222 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3283 ; 0.315 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 344 ; 0.222 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 106 ; 0.262 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 28 ; 0.295 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2950 ; 0.873 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4658 ; 1.459 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1956 ; 2.335 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1670 ; 3.610 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 230 REMARK 3 ORIGIN FOR THE GROUP (A): 29.3816 19.0437 48.4902 REMARK 3 T TENSOR REMARK 3 T11: 0.0323 T22: -0.0762 REMARK 3 T33: -0.0696 T12: -0.0321 REMARK 3 T13: -0.0381 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.8843 L22: 3.0174 REMARK 3 L33: 2.9237 L12: 0.4426 REMARK 3 L13: -0.2544 L23: -0.6564 REMARK 3 S TENSOR REMARK 3 S11: 0.1018 S12: -0.2375 S13: -0.1479 REMARK 3 S21: 0.5684 S22: -0.0388 S23: -0.0772 REMARK 3 S31: 0.2872 S32: 0.1526 S33: -0.0629 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 231 A 440 REMARK 3 ORIGIN FOR THE GROUP (A): 18.5470 23.5396 15.1577 REMARK 3 T TENSOR REMARK 3 T11: -0.2261 T22: -0.1727 REMARK 3 T33: -0.1931 T12: -0.0246 REMARK 3 T13: 0.0029 T23: -0.0323 REMARK 3 L TENSOR REMARK 3 L11: 1.7558 L22: 3.8809 REMARK 3 L33: 2.4066 L12: 0.2639 REMARK 3 L13: 0.4045 L23: -1.2926 REMARK 3 S TENSOR REMARK 3 S11: 0.0646 S12: 0.1436 S13: -0.1050 REMARK 3 S21: -0.1850 S22: 0.1344 S23: 0.3133 REMARK 3 S31: 0.1135 S32: -0.0492 S33: -0.1991 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 441 A 590 REMARK 3 ORIGIN FOR THE GROUP (A): -10.0316 38.3510 -2.2205 REMARK 3 T TENSOR REMARK 3 T11: -0.2004 T22: 0.0209 REMARK 3 T33: -0.1232 T12: -0.0779 REMARK 3 T13: 0.0465 T23: 0.0500 REMARK 3 L TENSOR REMARK 3 L11: 3.7494 L22: 3.7437 REMARK 3 L33: 4.9690 L12: -0.1909 REMARK 3 L13: 0.2821 L23: 0.5311 REMARK 3 S TENSOR REMARK 3 S11: -0.0037 S12: 0.2478 S13: 0.1562 REMARK 3 S21: 0.0834 S22: -0.0508 S23: -0.3419 REMARK 3 S31: -0.2851 S32: 0.6755 S33: 0.0546 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2HIV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1000038391. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 12.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.12 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48112 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.43700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6-8% PEG 3350, 100MM SODIUM ACETATE PH REMARK 280 4.5, 20-80MM SODIUM/POTASSIUM TARTRATE, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.65500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.65500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 59.60300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 84.88500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 59.60300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 84.88500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 38.65500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 59.60300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 84.88500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 38.65500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 59.60300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 84.88500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 GLN A 103 REMARK 465 SER A 104 REMARK 465 THR A 105 REMARK 465 GLY A 106 REMARK 465 ILE A 107 REMARK 465 LEU A 108 REMARK 465 GLY A 109 REMARK 465 PHE A 110 REMARK 465 LEU A 111 REMARK 465 GLY A 112 REMARK 465 THR A 113 REMARK 465 THR A 114 REMARK 465 SER A 115 REMARK 465 LYS A 591 REMARK 465 ILE A 592 REMARK 465 GLU A 593 REMARK 465 SER A 594 REMARK 465 PRO A 595 REMARK 465 ALA A 596 REMARK 465 VAL A 597 REMARK 465 ASP A 598 REMARK 465 GLU A 599 REMARK 465 SER A 600 REMARK 465 VAL A 601 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 ARG A 436 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 437 CG OD1 OD2 REMARK 470 TYR A 438 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER A 440 OG REMARK 470 GLU A 441 CG CD OE1 OE2 REMARK 470 MET A 442 CG SD CE REMARK 470 LYS A 590 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 170 O HOH A 777 2.00 REMARK 500 NE ARG A 265 OE1 GLU A 308 2.15 REMARK 500 OH TYR A 43 O HOH A 619 2.16 REMARK 500 O GLU A 137 O HOH A 813 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 506 O HOH A 811 3555 1.79 REMARK 500 OG SER A 18 OD2 ASP A 419 6555 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 308 CB GLU A 308 CG -0.167 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 345 CG1 - CB - CG2 ANGL. DEV. = 10.1 DEGREES REMARK 500 LEU A 352 CA - CB - CG ANGL. DEV. = 18.1 DEGREES REMARK 500 ARG A 369 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 369 NE - CZ - NH2 ANGL. DEV. = -7.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 171 71.55 -102.14 REMARK 500 GLU A 239 -179.27 -68.30 REMARK 500 GLU A 272 -71.28 37.75 REMARK 500 PHE A 350 -8.33 -140.21 REMARK 500 ALA A 385 134.06 -38.70 REMARK 500 ARG A 436 -25.43 -38.93 REMARK 500 ASP A 437 8.87 -58.81 REMARK 500 SER A 440 -47.32 -130.41 REMARK 500 GLU A 441 -87.57 -72.65 REMARK 500 MET A 442 84.33 -68.05 REMARK 500 SER A 465 18.15 -143.50 REMARK 500 VAL A 526 -48.31 -132.71 REMARK 500 ASP A 547 -4.29 70.57 REMARK 500 LYS A 589 31.95 -80.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2HII RELATED DB: PDB REMARK 900 RELATED ID: 2HIK RELATED DB: PDB REMARK 900 RELATED ID: 2HIX RELATED DB: PDB DBREF 2HIV A 1 601 UNP Q980T8 DNLI_SULSO 1 601 SEQADV 2HIV MET A -19 UNP Q980T8 CLONING ARTIFACT SEQADV 2HIV GLY A -18 UNP Q980T8 CLONING ARTIFACT SEQADV 2HIV SER A -17 UNP Q980T8 CLONING ARTIFACT SEQADV 2HIV SER A -16 UNP Q980T8 CLONING ARTIFACT SEQADV 2HIV HIS A -15 UNP Q980T8 EXPRESSION TAG SEQADV 2HIV HIS A -14 UNP Q980T8 EXPRESSION TAG SEQADV 2HIV HIS A -13 UNP Q980T8 EXPRESSION TAG SEQADV 2HIV HIS A -12 UNP Q980T8 EXPRESSION TAG SEQADV 2HIV HIS A -11 UNP Q980T8 EXPRESSION TAG SEQADV 2HIV HIS A -10 UNP Q980T8 EXPRESSION TAG SEQADV 2HIV SER A -9 UNP Q980T8 CLONING ARTIFACT SEQADV 2HIV SER A -8 UNP Q980T8 CLONING ARTIFACT SEQADV 2HIV GLY A -7 UNP Q980T8 CLONING ARTIFACT SEQADV 2HIV LEU A -6 UNP Q980T8 CLONING ARTIFACT SEQADV 2HIV VAL A -5 UNP Q980T8 CLONING ARTIFACT SEQADV 2HIV PRO A -4 UNP Q980T8 CLONING ARTIFACT SEQADV 2HIV ARG A -3 UNP Q980T8 CLONING ARTIFACT SEQADV 2HIV GLY A -2 UNP Q980T8 CLONING ARTIFACT SEQADV 2HIV SER A -1 UNP Q980T8 CLONING ARTIFACT SEQADV 2HIV HIS A 0 UNP Q980T8 CLONING ARTIFACT SEQRES 1 A 621 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 621 LEU VAL PRO ARG GLY SER HIS MET GLU PHE LYS VAL ILE SEQRES 3 A 621 ALA GLU TYR PHE ASP LYS LEU GLU LYS ILE SER SER ARG SEQRES 4 A 621 LEU GLN LEU THR ALA LEU LEU ALA ASP LEU LEU SER LYS SEQRES 5 A 621 SER ASP LYS THR ILE ILE ASP LYS VAL VAL TYR ILE ILE SEQRES 6 A 621 GLN GLY LYS LEU TRP PRO ASP PHE LEU GLY TYR PRO GLU SEQRES 7 A 621 LEU GLY ILE GLY GLU LYS PHE LEU ILE LYS ALA ILE SER SEQRES 8 A 621 ILE ALA THR ASN THR ASP GLU ASN SER VAL GLU ASN LEU SEQRES 9 A 621 TYR LYS THR ILE GLY ASP LEU GLY GLU VAL ALA ARG ARG SEQRES 10 A 621 LEU LYS SER LYS GLN GLN SER THR GLY ILE LEU GLY PHE SEQRES 11 A 621 LEU GLY THR THR SER LYS GLU SER LEU THR VAL ASP GLU SEQRES 12 A 621 VAL TYR SER THR LEU SER LYS VAL ALA LEU THR THR GLY SEQRES 13 A 621 GLU GLY SER ARG ASP LEU LYS ILE ARG LEU LEU ALA GLY SEQRES 14 A 621 LEU LEU LYS LYS ALA ASP PRO LEU GLU ALA LYS PHE LEU SEQRES 15 A 621 VAL ARG PHE VAL GLU GLY ARG LEU ARG VAL GLY ILE GLY SEQRES 16 A 621 ASP ALA THR VAL LEU ASP ALA MET ALA ILE ALA PHE GLY SEQRES 17 A 621 GLY GLY GLN SER ALA SER GLU ILE ILE GLU ARG ALA TYR SEQRES 18 A 621 ASN LEU ARG ALA ASP LEU GLY ASN ILE ALA LYS ILE ILE SEQRES 19 A 621 VAL GLU LYS GLY ILE GLU ALA LEU LYS THR LEU LYS PRO SEQRES 20 A 621 GLN VAL GLY ILE PRO ILE ARG PRO MET LEU ALA GLU ARG SEQRES 21 A 621 LEU SER ASN PRO GLU GLU ILE LEU LYS LYS MET GLY GLY SEQRES 22 A 621 ASN ALA ILE VAL ASP TYR LYS TYR ASP GLY GLU ARG ALA SEQRES 23 A 621 GLN ILE HIS LYS LYS GLU ASP LYS ILE PHE ILE PHE SER SEQRES 24 A 621 ARG ARG LEU GLU ASN ILE THR SER GLN TYR PRO ASP VAL SEQRES 25 A 621 VAL ASP TYR VAL SER LYS TYR ILE GLU GLY LYS GLU PHE SEQRES 26 A 621 ILE ILE GLU GLY GLU ILE VAL ALA ILE ASP PRO GLU SER SEQRES 27 A 621 GLY GLU MET ARG PRO PHE GLN GLU LEU MET HIS ARG LYS SEQRES 28 A 621 ARG LYS SER ASP ILE TYR GLU ALA ILE LYS GLU TYR PRO SEQRES 29 A 621 VAL ASN VAL PHE LEU PHE ASP LEU MET TYR TYR GLU ASP SEQRES 30 A 621 VAL ASP TYR THR THR LYS PRO LEU GLU ALA ARG ARG LYS SEQRES 31 A 621 LEU LEU GLU SER ILE VAL LYS PRO ASN ASP TYR VAL LYS SEQRES 32 A 621 ILE ALA HIS HIS ILE GLN ALA ASN ASN VAL GLU ASP LEU SEQRES 33 A 621 LYS SER PHE PHE TYR ARG ALA ILE SER GLU GLY GLY GLU SEQRES 34 A 621 GLY VAL MET VAL LYS ALA ILE GLY LYS ASP ALA ILE TYR SEQRES 35 A 621 GLN ALA GLY ALA ARG GLY TRP LEU TRP ILE LYS LEU LYS SEQRES 36 A 621 ARG ASP TYR GLN SER GLU MET ALA ASP THR VAL ASP LEU SEQRES 37 A 621 VAL VAL VAL GLY GLY PHE TYR GLY LYS GLY LYS ARG GLY SEQRES 38 A 621 GLY LYS ILE SER SER LEU LEU MET ALA ALA TYR ASN PRO SEQRES 39 A 621 LYS THR ASP SER PHE GLU SER VAL CYS LYS VAL ALA SER SEQRES 40 A 621 GLY PHE SER ASP GLU GLN LEU ASP GLU LEU GLN LYS LYS SEQRES 41 A 621 LEU MET GLU ILE LYS ARG ASP VAL LYS HIS PRO ARG VAL SEQRES 42 A 621 ASN SER LYS MET GLU PRO ASP ILE TRP VAL GLU PRO VAL SEQRES 43 A 621 TYR VAL ALA GLU ILE ILE GLY SER GLU ILE THR ILE SER SEQRES 44 A 621 PRO LEU HIS THR CYS CYS GLN ASP VAL VAL GLU LYS ASP SEQRES 45 A 621 ALA GLY LEU SER ILE ARG PHE PRO ARG PHE ILE ARG TRP SEQRES 46 A 621 ARG ASP ASP LYS SER PRO GLU ASP ALA THR THR THR ASP SEQRES 47 A 621 GLU ILE LEU GLU MET TYR ASN LYS GLN PRO LYS LYS LYS SEQRES 48 A 621 ILE GLU SER PRO ALA VAL ASP GLU SER VAL FORMUL 2 HOH *225(H2 O) HELIX 1 1 PHE A 3 ILE A 16 1 14 HELIX 2 2 SER A 18 LYS A 32 1 15 HELIX 3 3 ASP A 34 THR A 36 5 3 HELIX 4 4 ILE A 37 ILE A 45 1 9 HELIX 5 5 PRO A 51 GLY A 55 5 5 HELIX 6 6 GLY A 62 ASN A 75 1 14 HELIX 7 7 ASP A 77 GLY A 89 1 13 HELIX 8 8 ASP A 90 LYS A 101 1 12 HELIX 9 9 THR A 120 THR A 134 1 15 HELIX 10 10 GLY A 138 ALA A 154 1 17 HELIX 11 11 ASP A 155 GLU A 167 1 13 HELIX 12 12 GLY A 175 GLY A 188 1 14 HELIX 13 13 GLY A 190 SER A 192 5 3 HELIX 14 14 ALA A 193 ARG A 204 1 12 HELIX 15 15 ASP A 206 GLY A 218 1 13 HELIX 16 16 ILE A 219 LYS A 223 5 5 HELIX 17 17 ASN A 243 MET A 251 1 9 HELIX 18 18 ILE A 285 GLN A 288 5 4 HELIX 19 19 TYR A 289 ILE A 300 1 12 HELIX 20 20 PHE A 324 LYS A 333 1 10 HELIX 21 21 ASP A 335 TYR A 343 1 9 HELIX 22 22 PRO A 364 VAL A 376 1 13 HELIX 23 23 ASN A 392 GLU A 406 1 15 HELIX 24 24 LYS A 457 GLY A 461 5 5 HELIX 25 25 SER A 490 GLU A 503 1 14 HELIX 26 26 SER A 570 ALA A 574 5 5 HELIX 27 27 THR A 576 GLN A 587 1 12 SHEET 1 A 5 LEU A 237 ARG A 240 0 SHEET 2 A 5 ARG A 427 LYS A 435 1 O LYS A 433 N GLU A 239 SHEET 3 A 5 GLY A 410 LYS A 414 -1 N VAL A 413 O ILE A 432 SHEET 4 A 5 ALA A 255 LYS A 260 -1 N ILE A 256 O LYS A 414 SHEET 5 A 5 HIS A 387 ALA A 390 -1 O ILE A 388 N VAL A 257 SHEET 1 B 5 LYS A 274 PHE A 278 0 SHEET 2 B 5 GLU A 264 LYS A 271 -1 N HIS A 269 O PHE A 276 SHEET 3 B 5 PHE A 305 ALA A 313 -1 O GLY A 309 N ALA A 266 SHEET 4 B 5 VAL A 345 TYR A 355 -1 O PHE A 348 N GLU A 310 SHEET 5 B 5 VAL A 358 ASP A 359 -1 O VAL A 358 N TYR A 355 SHEET 1 C 5 LYS A 274 PHE A 278 0 SHEET 2 C 5 GLU A 264 LYS A 271 -1 N HIS A 269 O PHE A 276 SHEET 3 C 5 PHE A 305 ALA A 313 -1 O GLY A 309 N ALA A 266 SHEET 4 C 5 VAL A 345 TYR A 355 -1 O PHE A 348 N GLU A 310 SHEET 5 C 5 VAL A 382 ILE A 384 1 O LYS A 383 N LEU A 349 SHEET 1 D 6 LYS A 505 ARG A 506 0 SHEET 2 D 6 ILE A 521 VAL A 523 -1 O TRP A 522 N ARG A 506 SHEET 3 D 6 ASP A 444 TYR A 455 -1 N GLY A 453 O ILE A 521 SHEET 4 D 6 ILE A 464 ASN A 473 -1 O ALA A 470 N VAL A 449 SHEET 5 D 6 SER A 478 VAL A 485 -1 O SER A 478 N ASN A 473 SHEET 6 D 6 VAL A 513 ASN A 514 1 O ASN A 514 N PHE A 479 SHEET 1 E 5 LYS A 505 ARG A 506 0 SHEET 2 E 5 ILE A 521 VAL A 523 -1 O TRP A 522 N ARG A 506 SHEET 3 E 5 ASP A 444 TYR A 455 -1 N GLY A 453 O ILE A 521 SHEET 4 E 5 VAL A 528 GLY A 533 -1 O ILE A 531 N VAL A 446 SHEET 5 E 5 ARG A 561 TRP A 565 -1 O ILE A 563 N GLU A 530 SHEET 1 F 2 GLU A 535 SER A 539 0 SHEET 2 F 2 GLY A 554 ARG A 558 -1 O GLY A 554 N SER A 539 CRYST1 119.206 169.770 77.310 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008389 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005890 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012935 0.00000