HEADER OXIDOREDUCTASE 05-JUL-06 2HKO TITLE CRYSTAL STRUCTURE OF LSD1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSINE-SPECIFIC HISTONE DEMETHYLASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AMINE OXIDASE FLAVIN-CONTAINING DOMAIN PROTEIN 2, BRAF35- COMPND 5 HDAC COMPLEX PROTEIN BHC110; COMPND 6 EC: 1.-.-.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AOF2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B-SUMO KEYWDS SWIRM DOMAIN, FAD BINDING DOMAIN, COILED-COIL, AMINE OXIDASE DOMAIN, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.CHEN,Y.T.YANG,F.WANG,K.YANANE,Y.ZHANG,M.LEI REVDAT 5 14-FEB-24 2HKO 1 REMARK REVDAT 4 20-OCT-21 2HKO 1 REMARK SEQADV REVDAT 3 24-FEB-09 2HKO 1 VERSN REVDAT 2 21-NOV-06 2HKO 1 JRNL REVDAT 1 29-AUG-06 2HKO 0 JRNL AUTH Y.CHEN,Y.YANG,F.WANG,K.WAN,K.YAMANE,Y.ZHANG,M.LEI JRNL TITL CRYSTAL STRUCTURE OF HUMAN HISTONE LYSINE-SPECIFIC JRNL TITL 2 DEMETHYLASE 1 (LSD1). JRNL REF PROC.NATL.ACAD.SCI.USA V. 103 13956 2006 JRNL REFN ISSN 0027-8424 JRNL PMID 16956976 JRNL DOI 10.1073/PNAS.0606381103 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 26475 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2622 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5072 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 101 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.350 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.54 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.900 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2HKO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1000038456. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.30 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1, 1.00696, 1.00874 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26719 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 17.30 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.4 REMARK 200 DATA REDUNDANCY IN SHELL : 8.30 REMARK 200 R MERGE FOR SHELL (I) : 0.63200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.630 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% PEG 8K, 10 MM MGCL2, 150 MM NACL, REMARK 280 50 MM NA2HPO4/KH2PO4 PH 6.33, 2MM DTT, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 289K, PH 6.30 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.52700 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 71.05400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.29050 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 88.81750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 17.76350 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 35.52700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 71.05400 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 88.81750 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 53.29050 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 17.76350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 172 REMARK 465 SER A 466 REMARK 465 GLU A 467 REMARK 465 VAL A 468 REMARK 465 LYS A 469 REMARK 465 PRO A 470 REMARK 465 PRO A 471 REMARK 465 ARG A 472 REMARK 465 ASP A 473 REMARK 465 ILE A 786 REMARK 465 PRO A 787 REMARK 465 GLY A 788 REMARK 465 ALA A 789 REMARK 465 PRO A 790 REMARK 465 MET A 833 REMARK 465 TYR A 834 REMARK 465 THR A 835 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 367 O GLY A 733 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 640 CA VAL A 640 CB -0.141 REMARK 500 VAL A 640 CB VAL A 640 CG1 -0.174 REMARK 500 VAL A 640 CB VAL A 640 CG2 -0.160 REMARK 500 PRO A 642 CB PRO A 642 CG -0.315 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 641 N - CD - CG ANGL. DEV. = -9.4 DEGREES REMARK 500 PRO A 642 N - CD - CG ANGL. DEV. = -9.0 DEGREES REMARK 500 PRO A 782 N - CA - C ANGL. DEV. = 16.4 DEGREES REMARK 500 PRO A 784 C - N - CA ANGL. DEV. = -14.4 DEGREES REMARK 500 SER A 785 N - CA - CB ANGL. DEV. = 14.7 DEGREES REMARK 500 SER A 785 N - CA - C ANGL. DEV. = -36.9 DEGREES REMARK 500 PRO A 792 C - N - CA ANGL. DEV. = 11.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 203 -162.35 -49.74 REMARK 500 GLN A 204 -66.28 -98.76 REMARK 500 GLU A 239 -179.59 -62.88 REMARK 500 ASN A 243 4.45 -57.81 REMARK 500 ASN A 263 73.96 -158.38 REMARK 500 PRO A 272 155.86 -40.52 REMARK 500 THR A 278 -99.94 -45.69 REMARK 500 SER A 286 42.78 -100.27 REMARK 500 ASN A 350 81.83 61.65 REMARK 500 LYS A 359 117.63 -162.96 REMARK 500 PRO A 371 -81.18 -35.61 REMARK 500 LYS A 372 -53.00 171.88 REMARK 500 SER A 393 -77.09 -68.97 REMARK 500 VAL A 415 -70.36 -43.64 REMARK 500 SER A 548 98.65 -56.18 REMARK 500 SER A 609 88.55 -169.27 REMARK 500 PRO A 634 96.18 -64.70 REMARK 500 PRO A 642 176.91 -51.07 REMARK 500 LEU A 659 129.41 179.97 REMARK 500 LEU A 677 -165.77 -111.23 REMARK 500 PHE A 678 125.99 147.57 REMARK 500 SER A 687 32.40 -98.74 REMARK 500 ASN A 696 -12.98 -152.11 REMARK 500 LEU A 697 -32.37 -27.42 REMARK 500 TYR A 698 100.77 -58.54 REMARK 500 LYS A 699 61.96 -63.29 REMARK 500 PRO A 701 45.67 -74.46 REMARK 500 ALA A 712 -72.26 -43.96 REMARK 500 ASN A 717 31.57 -91.20 REMARK 500 ALA A 739 34.82 -81.66 REMARK 500 VAL A 740 77.26 -154.90 REMARK 500 ALA A 757 -53.20 -135.20 REMARK 500 SER A 760 -69.65 -103.97 REMARK 500 PRO A 792 159.84 -39.60 REMARK 500 GLU A 801 -18.67 -45.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 642 LEU A 643 -140.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 2762 DBREF 2HKO A 172 835 UNP O60341 LSD1_HUMAN 172 835 SEQADV 2HKO GLN A 594 UNP O60341 ARG 594 ENGINEERED MUTATION SEQRES 1 A 664 SER GLY VAL GLU GLY ALA ALA PHE GLN SER ARG LEU PRO SEQRES 2 A 664 HIS ASP ARG MET THR SER GLN GLU ALA ALA CYS PHE PRO SEQRES 3 A 664 ASP ILE ILE SER GLY PRO GLN GLN THR GLN LYS VAL PHE SEQRES 4 A 664 LEU PHE ILE ARG ASN ARG THR LEU GLN LEU TRP LEU ASP SEQRES 5 A 664 ASN PRO LYS ILE GLN LEU THR PHE GLU ALA THR LEU GLN SEQRES 6 A 664 GLN LEU GLU ALA PRO TYR ASN SER ASP THR VAL LEU VAL SEQRES 7 A 664 HIS ARG VAL HIS SER TYR LEU GLU ARG HIS GLY LEU ILE SEQRES 8 A 664 ASN PHE GLY ILE TYR LYS ARG ILE LYS PRO LEU PRO THR SEQRES 9 A 664 LYS LYS THR GLY LYS VAL ILE ILE ILE GLY SER GLY VAL SEQRES 10 A 664 SER GLY LEU ALA ALA ALA ARG GLN LEU GLN SER PHE GLY SEQRES 11 A 664 MET ASP VAL THR LEU LEU GLU ALA ARG ASP ARG VAL GLY SEQRES 12 A 664 GLY ARG VAL ALA THR PHE ARG LYS GLY ASN TYR VAL ALA SEQRES 13 A 664 ASP LEU GLY ALA MET VAL VAL THR GLY LEU GLY GLY ASN SEQRES 14 A 664 PRO MET ALA VAL VAL SER LYS GLN VAL ASN MET GLU LEU SEQRES 15 A 664 ALA LYS ILE LYS GLN LYS CYS PRO LEU TYR GLU ALA ASN SEQRES 16 A 664 GLY GLN ALA VAL PRO LYS GLU LYS ASP GLU MET VAL GLU SEQRES 17 A 664 GLN GLU PHE ASN ARG LEU LEU GLU ALA THR SER TYR LEU SEQRES 18 A 664 SER HIS GLN LEU ASP PHE ASN VAL LEU ASN ASN LYS PRO SEQRES 19 A 664 VAL SER LEU GLY GLN ALA LEU GLU VAL VAL ILE GLN LEU SEQRES 20 A 664 GLN GLU LYS HIS VAL LYS ASP GLU GLN ILE GLU HIS TRP SEQRES 21 A 664 LYS LYS ILE VAL LYS THR GLN GLU GLU LEU LYS GLU LEU SEQRES 22 A 664 LEU ASN LYS MET VAL ASN LEU LYS GLU LYS ILE LYS GLU SEQRES 23 A 664 LEU HIS GLN GLN TYR LYS GLU ALA SER GLU VAL LYS PRO SEQRES 24 A 664 PRO ARG ASP ILE THR ALA GLU PHE LEU VAL LYS SER LYS SEQRES 25 A 664 HIS ARG ASP LEU THR ALA LEU CYS LYS GLU TYR ASP GLU SEQRES 26 A 664 LEU ALA GLU THR GLN GLY LYS LEU GLU GLU LYS LEU GLN SEQRES 27 A 664 GLU LEU GLU ALA ASN PRO PRO SER ASP VAL TYR LEU SER SEQRES 28 A 664 SER ARG ASP ARG GLN ILE LEU ASP TRP HIS PHE ALA ASN SEQRES 29 A 664 LEU GLU PHE ALA ASN ALA THR PRO LEU SER THR LEU SER SEQRES 30 A 664 LEU LYS HIS TRP ASP GLN ASP ASP ASP PHE GLU PHE THR SEQRES 31 A 664 GLY SER HIS LEU THR VAL ARG ASN GLY TYR SER CYS VAL SEQRES 32 A 664 PRO VAL ALA LEU ALA GLU GLY LEU ASP ILE LYS LEU ASN SEQRES 33 A 664 THR ALA VAL ARG GLN VAL GLN TYR THR ALA SER GLY CYS SEQRES 34 A 664 GLU VAL ILE ALA VAL ASN THR ARG SER THR SER GLN THR SEQRES 35 A 664 PHE ILE TYR LYS CYS ASP ALA VAL LEU CYS THR LEU PRO SEQRES 36 A 664 LEU GLY VAL LEU LYS GLN GLN PRO PRO ALA VAL GLN PHE SEQRES 37 A 664 VAL PRO PRO LEU PRO GLU TRP LYS THR SER ALA VAL GLN SEQRES 38 A 664 ARG MET GLY PHE GLY ASN LEU ASN LYS VAL VAL LEU CYS SEQRES 39 A 664 PHE ASP ARG VAL PHE TRP ASP PRO SER VAL ASN LEU PHE SEQRES 40 A 664 GLY HIS VAL GLY SER THR THR ALA SER ARG GLY GLU LEU SEQRES 41 A 664 PHE LEU PHE TRP ASN LEU TYR LYS ALA PRO ILE LEU LEU SEQRES 42 A 664 ALA LEU VAL ALA GLY GLU ALA ALA GLY ILE MET GLU ASN SEQRES 43 A 664 ILE SER ASP ASP VAL ILE VAL GLY ARG CYS LEU ALA ILE SEQRES 44 A 664 LEU LYS GLY ILE PHE GLY SER SER ALA VAL PRO GLN PRO SEQRES 45 A 664 LYS GLU THR VAL VAL SER ARG TRP ARG ALA ASP PRO TRP SEQRES 46 A 664 ALA ARG GLY SER TYR SER TYR VAL ALA ALA GLY SER SER SEQRES 47 A 664 GLY ASN ASP TYR ASP LEU MET ALA GLN PRO ILE THR PRO SEQRES 48 A 664 GLY PRO SER ILE PRO GLY ALA PRO GLN PRO ILE PRO ARG SEQRES 49 A 664 LEU PHE PHE ALA GLY GLU HIS THR ILE ARG ASN TYR PRO SEQRES 50 A 664 ALA THR VAL HIS GLY ALA LEU LEU SER GLY LEU ARG GLU SEQRES 51 A 664 ALA GLY ARG ILE ALA ASP GLN PHE LEU GLY ALA MET TYR SEQRES 52 A 664 THR HET FAD A2762 53 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 HOH *101(H2 O) HELIX 1 1 GLY A 173 SER A 181 1 9 HELIX 2 2 THR A 189 PHE A 196 1 8 HELIX 3 3 PHE A 196 GLY A 202 1 7 HELIX 4 4 GLN A 204 ASN A 224 1 21 HELIX 5 5 GLU A 232 GLN A 237 1 6 HELIX 6 6 ASP A 245 HIS A 259 1 15 HELIX 7 7 GLY A 287 PHE A 300 1 14 HELIX 8 8 PRO A 341 ASN A 350 1 10 HELIX 9 9 LYS A 372 HIS A 394 1 23 HELIX 10 10 SER A 407 ALA A 465 1 59 HELIX 11 11 PHE A 478 ASN A 514 1 37 HELIX 12 12 SER A 522 ALA A 541 1 20 HELIX 13 13 PRO A 543 LEU A 547 5 5 HELIX 14 14 ASP A 553 GLU A 559 5 7 HELIX 15 15 SER A 572 ALA A 579 1 8 HELIX 16 16 PRO A 644 MET A 654 1 11 HELIX 17 17 GLU A 710 GLU A 716 1 7 HELIX 18 18 SER A 719 GLY A 736 1 18 HELIX 19 19 GLY A 770 GLN A 778 1 9 HELIX 20 20 THR A 810 LEU A 830 1 21 SHEET 1 A 5 ILE A 584 LYS A 585 0 SHEET 2 A 5 ASP A 303 LEU A 307 1 N LEU A 306 O LYS A 585 SHEET 3 A 5 LYS A 280 ILE A 284 1 N VAL A 281 O ASP A 303 SHEET 4 A 5 ALA A 620 CYS A 623 1 O LEU A 622 N ILE A 282 SHEET 5 A 5 LEU A 796 PHE A 798 1 O PHE A 797 N CYS A 623 SHEET 1 B 2 THR A 319 LYS A 322 0 SHEET 2 B 2 TYR A 325 ASP A 328 -1 O ALA A 327 N PHE A 320 SHEET 1 C 3 VAL A 333 VAL A 334 0 SHEET 2 C 3 LEU A 565 VAL A 567 -1 O LEU A 565 N VAL A 334 SHEET 3 C 3 LEU A 353 LYS A 355 -1 N ALA A 354 O THR A 566 SHEET 1 D 2 LEU A 362 TYR A 363 0 SHEET 2 D 2 GLY A 679 HIS A 680 1 O GLY A 679 N TYR A 363 SHEET 1 E 4 SER A 609 CYS A 618 0 SHEET 2 E 4 GLY A 599 ASN A 606 -1 N CYS A 600 O CYS A 618 SHEET 3 E 4 THR A 588 THR A 596 -1 N ARG A 591 O ILE A 603 SHEET 4 E 4 GLN A 638 VAL A 640 1 O GLN A 638 N VAL A 593 SHEET 1 F 2 GLY A 655 PHE A 656 0 SHEET 2 F 2 SER A 762 TYR A 763 -1 O TYR A 763 N GLY A 655 SHEET 1 G 4 GLU A 690 TRP A 695 0 SHEET 2 G 4 ILE A 702 VAL A 707 -1 O LEU A 704 N TRP A 695 SHEET 3 G 4 ASN A 660 CYS A 665 -1 N LEU A 664 O LEU A 703 SHEET 4 G 4 GLU A 745 VAL A 748 -1 O VAL A 747 N VAL A 663 CISPEP 1 VAL A 640 PRO A 641 0 24.69 CISPEP 2 GLY A 783 PRO A 784 0 -1.08 SITE 1 AC1 38 GLY A 285 GLY A 287 VAL A 288 SER A 289 SITE 2 AC1 38 LEU A 307 GLU A 308 ALA A 309 ARG A 310 SITE 3 AC1 38 GLY A 314 GLY A 315 ARG A 316 LEU A 329 SITE 4 AC1 38 GLY A 330 ALA A 331 MET A 332 VAL A 333 SITE 5 AC1 38 THR A 588 ALA A 589 VAL A 590 THR A 624 SITE 6 AC1 38 LEU A 625 PRO A 626 LEU A 659 TRP A 751 SITE 7 AC1 38 TRP A 756 SER A 760 TYR A 761 GLY A 800 SITE 8 AC1 38 GLU A 801 ALA A 809 THR A 810 VAL A 811 SITE 9 AC1 38 ALA A 814 HOH A2763 HOH A2765 HOH A2815 SITE 10 AC1 38 HOH A2824 HOH A2843 CRYST1 187.113 187.113 106.581 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005344 0.003085 0.000000 0.00000 SCALE2 0.000000 0.006171 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009383 0.00000