HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 11-JUL-06 2HMC TITLE THE CRYSTAL STRUCTURE OF DIHYDRODIPICOLINATE SYNTHASE DAPA FROM TITLE 2 AGROBACTERIUM TUMEFACIENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDRODIPICOLINATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AGR_L_411P; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS STR.; SOURCE 3 ORGANISM_TAXID: 176299; SOURCE 4 STRAIN: C58; SOURCE 5 GENE: DAPA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS ALPHA-BETA BARREL (TIM BARREL), STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 3 UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,R.ZHANG,X.XU,H.ZHENG,A.SAVCHENKO,A.JOACHIMIAK,MIDWEST CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS (MCSG) REVDAT 4 30-OCT-24 2HMC 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 2HMC 1 VERSN REVDAT 2 24-FEB-09 2HMC 1 VERSN REVDAT 1 05-SEP-06 2HMC 0 JRNL AUTH Y.KIM,R.ZHANG,X.XU,H.ZHENG,A.EDWARDS,A.SAVCHENKO, JRNL AUTH 2 A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF DIHYDRODIPICOLINATE SYNTHASE DAPA JRNL TITL 2 FROM AGROBACTERIUM TUMEFACIENS JRNL REF TO BE PUBLISHED 2006 JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 25301 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2813 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1826 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.3110 REMARK 3 BIN FREE R VALUE SET COUNT : 212 REMARK 3 BIN FREE R VALUE : 0.3580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2388 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 409 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.67000 REMARK 3 B22 (A**2) : 1.67000 REMARK 3 B33 (A**2) : -2.50000 REMARK 3 B12 (A**2) : 0.83000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.173 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.167 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.125 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.980 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2577 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3506 ; 1.415 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 339 ; 5.815 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;34.235 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 428 ;14.975 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;18.209 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 387 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1982 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1416 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1811 ; 0.311 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 333 ; 0.170 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 58 ; 0.194 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 32 ; 0.149 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1674 ; 0.899 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2630 ; 1.252 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1023 ; 2.305 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 876 ; 3.549 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 310 REMARK 3 ORIGIN FOR THE GROUP (A): 4.0667 34.1192 12.2766 REMARK 3 T TENSOR REMARK 3 T11: -0.0328 T22: -0.0682 REMARK 3 T33: -0.0491 T12: 0.0216 REMARK 3 T13: 0.0175 T23: -0.0289 REMARK 3 L TENSOR REMARK 3 L11: 0.3981 L22: 0.4883 REMARK 3 L33: 0.7184 L12: 0.0661 REMARK 3 L13: -0.0036 L23: -0.0966 REMARK 3 S TENSOR REMARK 3 S11: -0.0296 S12: 0.0332 S13: -0.0977 REMARK 3 S21: -0.1077 S22: -0.0088 S23: -0.0189 REMARK 3 S31: 0.2223 S32: 0.0162 S33: 0.0384 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2HMC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1000038511. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97910 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-3 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29211 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 31.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 25.60 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 18.60 REMARK 200 R MERGE FOR SHELL (I) : 0.55500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M TRI-LITHIUM CITRATE, 20% PEG3350, REMARK 280 PH 4.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 60.45700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 60.45700 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 60.45700 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 60.45700 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 60.45700 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 60.45700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: HEXAMER THE ASYMMETRIC UNIT CONTAINS A MONOMER AND THE REMARK 300 OTHERS ARE GENERATED BY -X+Y, Y,-Z+1/2 Y,1-X+Y,Z+1/2 1-X+Y,1-X,Z -X, REMARK 300 1-X+Y,-Z 1+Y,1+X,-Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 16050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 65390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -143.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 50.55100 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 87.55690 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -50.55100 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 87.55690 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 50.55100 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 87.55690 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 60.45700 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 60.45700 REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 -50.55100 REMARK 350 BIOMT2 6 0.866025 -0.500000 0.000000 87.55690 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 60.45700 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 585 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 610 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 650 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 688 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 874 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 ARG A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 LEU A 311 REMARK 465 PRO A 312 REMARK 465 GLY A 313 REMARK 465 ALA A 314 REMARK 465 VAL A 315 REMARK 465 GLN A 316 REMARK 465 THR A 317 REMARK 465 CYS A 318 REMARK 465 LYS A 319 REMARK 465 ALA A 320 REMARK 465 ALA A 321 REMARK 465 GLY A 322 REMARK 465 SER A 323 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 549 O HOH A 895 1.97 REMARK 500 NH1 ARG A 30 O HOH A 871 2.06 REMARK 500 O ASP A 184 O HOH A 881 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 108 -27.32 81.26 REMARK 500 LEU A 216 60.96 -118.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 105 O REMARK 620 2 HOH A 568 O 99.7 REMARK 620 3 HOH A 603 O 103.7 125.1 REMARK 620 4 HOH A 873 O 76.7 106.5 126.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 180 O REMARK 620 2 ARG A 182 O 109.5 REMARK 620 3 ASP A 184 OD1 153.7 82.3 REMARK 620 4 VAL A 186 O 81.3 162.3 93.9 REMARK 620 5 HOH A 536 O 84.7 91.0 71.3 104.3 REMARK 620 6 HOH A 869 O 107.0 78.3 98.3 85.3 166.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC6154 RELATED DB: TARGETDB DBREF 2HMC A 1 321 UNP Q8U6Y1 Q8U6Y1_AGRT5 1 321 SEQADV 2HMC MSE A -20 UNP Q8U6Y1 CLONING ARTIFACT SEQADV 2HMC GLY A -19 UNP Q8U6Y1 CLONING ARTIFACT SEQADV 2HMC SER A -18 UNP Q8U6Y1 CLONING ARTIFACT SEQADV 2HMC SER A -17 UNP Q8U6Y1 CLONING ARTIFACT SEQADV 2HMC HIS A -16 UNP Q8U6Y1 CLONING ARTIFACT SEQADV 2HMC HIS A -15 UNP Q8U6Y1 CLONING ARTIFACT SEQADV 2HMC HIS A -14 UNP Q8U6Y1 CLONING ARTIFACT SEQADV 2HMC HIS A -13 UNP Q8U6Y1 CLONING ARTIFACT SEQADV 2HMC HIS A -12 UNP Q8U6Y1 CLONING ARTIFACT SEQADV 2HMC HIS A -11 UNP Q8U6Y1 CLONING ARTIFACT SEQADV 2HMC SER A -10 UNP Q8U6Y1 CLONING ARTIFACT SEQADV 2HMC SER A -9 UNP Q8U6Y1 CLONING ARTIFACT SEQADV 2HMC GLY A -8 UNP Q8U6Y1 CLONING ARTIFACT SEQADV 2HMC ARG A -7 UNP Q8U6Y1 CLONING ARTIFACT SEQADV 2HMC GLU A -6 UNP Q8U6Y1 CLONING ARTIFACT SEQADV 2HMC ASN A -5 UNP Q8U6Y1 CLONING ARTIFACT SEQADV 2HMC LEU A -4 UNP Q8U6Y1 CLONING ARTIFACT SEQADV 2HMC TYR A -3 UNP Q8U6Y1 CLONING ARTIFACT SEQADV 2HMC PHE A -2 UNP Q8U6Y1 CLONING ARTIFACT SEQADV 2HMC GLN A -1 UNP Q8U6Y1 CLONING ARTIFACT SEQADV 2HMC GLY A 0 UNP Q8U6Y1 CLONING ARTIFACT SEQADV 2HMC MSE A 1 UNP Q8U6Y1 MET 1 MODIFIED RESIDUE SEQADV 2HMC MSE A 14 UNP Q8U6Y1 MET 14 MODIFIED RESIDUE SEQADV 2HMC MSE A 40 UNP Q8U6Y1 MET 40 MODIFIED RESIDUE SEQADV 2HMC MSE A 49 UNP Q8U6Y1 MET 49 MODIFIED RESIDUE SEQADV 2HMC MSE A 61 UNP Q8U6Y1 MET 61 MODIFIED RESIDUE SEQADV 2HMC MSE A 102 UNP Q8U6Y1 MET 102 MODIFIED RESIDUE SEQADV 2HMC MSE A 172 UNP Q8U6Y1 MET 172 MODIFIED RESIDUE SEQADV 2HMC MSE A 189 UNP Q8U6Y1 MET 189 MODIFIED RESIDUE SEQADV 2HMC MSE A 267 UNP Q8U6Y1 MET 267 MODIFIED RESIDUE SEQADV 2HMC MSE A 268 UNP Q8U6Y1 MET 268 MODIFIED RESIDUE SEQADV 2HMC GLY A 322 UNP Q8U6Y1 CLONING ARTIFACT SEQADV 2HMC SER A 323 UNP Q8U6Y1 CLONING ARTIFACT SEQRES 1 A 344 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 344 ARG GLU ASN LEU TYR PHE GLN GLY MSE THR ALA SER ILE SEQRES 3 A 344 PHE SER GLY VAL ILE PRO ALA LEU MSE THR PRO CYS ARG SEQRES 4 A 344 GLN ASP ARG THR PRO ASP PHE ASP ALA LEU VAL ARG LYS SEQRES 5 A 344 GLY LYS GLU LEU ILE ALA ASP GLY MSE SER ALA VAL VAL SEQRES 6 A 344 TYR CYS GLY SER MSE GLY ASP TRP PRO LEU LEU THR ASP SEQRES 7 A 344 GLU GLN ARG MSE GLU GLY VAL GLU ARG LEU VAL LYS ALA SEQRES 8 A 344 GLY ILE PRO VAL ILE VAL GLY THR GLY ALA VAL ASN THR SEQRES 9 A 344 ALA SER ALA VAL ALA HIS ALA VAL HIS ALA GLN LYS VAL SEQRES 10 A 344 GLY ALA LYS GLY LEU MSE VAL ILE PRO ARG VAL LEU SER SEQRES 11 A 344 ARG GLY SER VAL ILE ALA ALA GLN LYS ALA HIS PHE LYS SEQRES 12 A 344 ALA ILE LEU SER ALA ALA PRO GLU ILE PRO ALA VAL ILE SEQRES 13 A 344 TYR ASN SER PRO TYR TYR GLY PHE ALA THR ARG ALA ASP SEQRES 14 A 344 LEU PHE PHE ALA LEU ARG ALA GLU HIS LYS ASN LEU VAL SEQRES 15 A 344 GLY PHE LYS GLU PHE GLY GLY PRO ALA ASP MSE ARG TYR SEQRES 16 A 344 ALA ALA GLU ASN ILE THR SER ARG ASP ASP GLU VAL THR SEQRES 17 A 344 LEU MSE ILE GLY VAL ASP THR ALA VAL VAL HIS GLY PHE SEQRES 18 A 344 VAL ASN CYS GLY ALA THR GLY ALA ILE THR GLY ILE GLY SEQRES 19 A 344 ASN VAL LEU PRO LYS GLU VAL ILE HIS LEU CYS LYS LEU SEQRES 20 A 344 SER GLN ALA ALA ALA LYS GLY ASP ALA ASP ALA ARG ALA SEQRES 21 A 344 ARG ALA LEU GLU LEU GLU GLN ALA LEU ALA VAL LEU SER SEQRES 22 A 344 SER PHE ASP GLU GLY PRO ASP LEU VAL LEU TYR PHE LYS SEQRES 23 A 344 TYR MSE MSE VAL LEU LYS GLY ASP LYS GLU TYR THR LEU SEQRES 24 A 344 HIS PHE ASN GLU THR ASP ALA LEU THR ASP SER GLN ARG SEQRES 25 A 344 GLY TYR VAL GLU ALA GLN PHE LYS LEU PHE ASN SER TRP SEQRES 26 A 344 TYR ALA ASP TRP SER LYS LEU PRO GLY ALA VAL GLN THR SEQRES 27 A 344 CYS LYS ALA ALA GLY SER MODRES 2HMC MSE A 1 MET SELENOMETHIONINE MODRES 2HMC MSE A 14 MET SELENOMETHIONINE MODRES 2HMC MSE A 40 MET SELENOMETHIONINE MODRES 2HMC MSE A 49 MET SELENOMETHIONINE MODRES 2HMC MSE A 61 MET SELENOMETHIONINE MODRES 2HMC MSE A 102 MET SELENOMETHIONINE MODRES 2HMC MSE A 172 MET SELENOMETHIONINE MODRES 2HMC MSE A 189 MET SELENOMETHIONINE MODRES 2HMC MSE A 267 MET SELENOMETHIONINE MODRES 2HMC MSE A 268 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 14 8 HET MSE A 40 8 HET MSE A 49 8 HET MSE A 61 8 HET MSE A 102 8 HET MSE A 172 16 HET MSE A 189 16 HET MSE A 267 8 HET MSE A 268 8 HET MG A 501 1 HET MG A 502 1 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 2 MG 2(MG 2+) FORMUL 4 HOH *409(H2 O) HELIX 1 1 ASP A 24 ASP A 38 1 15 HELIX 2 2 GLY A 47 LEU A 55 5 9 HELIX 3 3 THR A 56 ALA A 70 1 15 HELIX 4 4 ASN A 82 GLY A 97 1 16 HELIX 5 5 VAL A 113 ALA A 128 1 16 HELIX 6 6 SER A 138 GLY A 142 5 5 HELIX 7 7 ARG A 146 HIS A 157 1 12 HELIX 8 8 GLY A 168 ILE A 179 1 12 HELIX 9 9 VAL A 192 THR A 194 5 3 HELIX 10 10 ALA A 195 CYS A 203 1 9 HELIX 11 11 GLY A 211 VAL A 215 5 5 HELIX 12 12 LEU A 216 ALA A 231 1 16 HELIX 13 13 ASP A 234 LEU A 248 1 15 HELIX 14 14 LEU A 248 PHE A 254 1 7 HELIX 15 15 ASP A 255 GLY A 257 5 3 HELIX 16 16 ASP A 259 LYS A 271 1 13 HELIX 17 17 ASP A 273 THR A 277 5 5 HELIX 18 18 THR A 287 LYS A 310 1 24 SHEET 1 A 8 GLY A 8 PRO A 11 0 SHEET 2 A 8 GLY A 207 THR A 210 1 O ALA A 208 N ILE A 10 SHEET 3 A 8 THR A 187 ILE A 190 1 N ILE A 190 O ILE A 209 SHEET 4 A 8 LEU A 160 GLU A 165 1 N PHE A 163 O MSE A 189 SHEET 5 A 8 ALA A 133 ASN A 137 1 N ILE A 135 O LYS A 164 SHEET 6 A 8 GLY A 100 VAL A 103 1 N VAL A 103 O VAL A 134 SHEET 7 A 8 VAL A 74 GLY A 77 1 N VAL A 76 O MSE A 102 SHEET 8 A 8 VAL A 43 TYR A 45 1 N VAL A 43 O ILE A 75 LINK C GLY A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N THR A 2 1555 1555 1.33 LINK C LEU A 13 N MSE A 14 1555 1555 1.33 LINK C MSE A 14 N THR A 15 1555 1555 1.33 LINK C GLY A 39 N MSE A 40 1555 1555 1.34 LINK C MSE A 40 N SER A 41 1555 1555 1.33 LINK C ASER A 48 N MSE A 49 1555 1555 1.33 LINK C BSER A 48 N MSE A 49 1555 1555 1.34 LINK C MSE A 49 N GLY A 50 1555 1555 1.33 LINK C ARG A 60 N MSE A 61 1555 1555 1.34 LINK C MSE A 61 N GLU A 62 1555 1555 1.34 LINK C LEU A 101 N MSE A 102 1555 1555 1.34 LINK C MSE A 102 N VAL A 103 1555 1555 1.33 LINK C ASP A 171 N BMSE A 172 1555 1555 1.33 LINK C ASP A 171 N AMSE A 172 1555 1555 1.34 LINK C BMSE A 172 N BARG A 173 1555 1555 1.33 LINK C AMSE A 172 N AARG A 173 1555 1555 1.33 LINK C LEU A 188 N BMSE A 189 1555 1555 1.34 LINK C LEU A 188 N AMSE A 189 1555 1555 1.34 LINK C BMSE A 189 N ILE A 190 1555 1555 1.34 LINK C AMSE A 189 N ILE A 190 1555 1555 1.34 LINK C TYR A 266 N MSE A 267 1555 1555 1.34 LINK C MSE A 267 N MSE A 268 1555 1555 1.33 LINK C MSE A 268 N VAL A 269 1555 1555 1.34 LINK O PRO A 105 MG MG A 502 1555 1555 2.78 LINK O THR A 180 MG MG A 501 1555 1555 2.44 LINK O ARG A 182 MG MG A 501 1555 1555 2.59 LINK OD1 ASP A 184 MG MG A 501 1555 1555 2.38 LINK O VAL A 186 MG MG A 501 1555 1555 2.52 LINK MG MG A 501 O HOH A 536 1555 1555 2.52 LINK MG MG A 501 O HOH A 869 1555 1555 2.25 LINK MG MG A 502 O HOH A 568 1555 1555 3.05 LINK MG MG A 502 O HOH A 603 1555 1555 2.15 LINK MG MG A 502 O HOH A 873 1555 1555 2.11 CISPEP 1 TYR A 45 CYS A 46 0 -4.08 SITE 1 AC1 6 THR A 180 ARG A 182 ASP A 184 VAL A 186 SITE 2 AC1 6 HOH A 536 HOH A 869 SITE 1 AC2 7 ALA A 80 ILE A 104 PRO A 105 HIS A 120 SITE 2 AC2 7 HOH A 568 HOH A 603 HOH A 873 CRYST1 101.102 101.102 120.914 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009891 0.005711 0.000000 0.00000 SCALE2 0.000000 0.011421 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008270 0.00000