HEADER TRANSFERASE 14-JUL-06 2HOE TITLE CRYSTAL STRUCTURE OF N-ACETYLGLUCOSAMINE KINASE (TM1224) FROM TITLE 2 THERMOTOGA MARITIMA AT 2.46 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-ACETYLGLUCOSAMINE KINASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.1.59; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: TM1224; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TM1224, N-ACETYLGLUCOSAMINE KINASE (EC 2.7.1.59), STRUCTURAL KEYWDS 2 GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, JOINT CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, JCSG, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 25-JAN-23 2HOE 1 REMARK SEQADV LINK REVDAT 4 18-OCT-17 2HOE 1 REMARK REVDAT 3 13-JUL-11 2HOE 1 VERSN REVDAT 2 24-FEB-09 2HOE 1 VERSN REVDAT 1 15-AUG-06 2HOE 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF N-ACETYLGLUCOSAMINE KINASE (EC JRNL TITL 2 2.7.1.59) (TM1224) FROM THERMOTOGA MARITIMA AT 2.46 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 14086 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 710 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.46 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.53 REMARK 3 REFLECTION IN BIN (WORKING SET) : 978 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.16 REMARK 3 BIN R VALUE (WORKING SET) : 0.3210 REMARK 3 BIN FREE R VALUE SET COUNT : 47 REMARK 3 BIN FREE R VALUE : 0.4130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2652 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 15 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 47.99 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.25000 REMARK 3 B22 (A**2) : 0.25000 REMARK 3 B33 (A**2) : -0.38000 REMARK 3 B12 (A**2) : 0.13000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.547 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.307 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.254 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.752 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.897 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2705 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2508 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3663 ; 1.031 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5786 ; 0.625 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 351 ; 4.108 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;31.589 ;24.528 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 444 ;11.417 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;13.243 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 423 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3026 ; 0.001 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 530 ; 0.000 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 590 ; 0.229 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2433 ; 0.191 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1392 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1396 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 56 ; 0.126 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.140 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.195 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 58 ; 0.163 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.124 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1745 ; 1.183 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 726 ; 0.211 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2793 ; 2.256 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 972 ; 4.127 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 870 ; 6.249 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 131 REMARK 3 ORIGIN FOR THE GROUP (A): -46.4670 43.4970 39.4730 REMARK 3 T TENSOR REMARK 3 T11: 0.1221 T22: 0.1458 REMARK 3 T33: 0.1694 T12: 0.0519 REMARK 3 T13: 0.0221 T23: -0.0133 REMARK 3 L TENSOR REMARK 3 L11: 7.6352 L22: 2.9598 REMARK 3 L33: 2.2266 L12: 1.2902 REMARK 3 L13: -1.2829 L23: -0.6458 REMARK 3 S TENSOR REMARK 3 S11: 0.2444 S12: -0.4814 S13: 0.2756 REMARK 3 S21: 0.1208 S22: -0.0119 S23: 0.3782 REMARK 3 S31: -0.1001 S32: -0.2862 S33: -0.2325 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 132 A 236 REMARK 3 ORIGIN FOR THE GROUP (A): -35.5380 37.4660 48.2750 REMARK 3 T TENSOR REMARK 3 T11: 0.0326 T22: 0.1112 REMARK 3 T33: 0.0477 T12: 0.0445 REMARK 3 T13: -0.0025 T23: -0.0730 REMARK 3 L TENSOR REMARK 3 L11: 1.3636 L22: 4.6126 REMARK 3 L33: 3.1333 L12: 0.3262 REMARK 3 L13: -0.7177 L23: -2.8720 REMARK 3 S TENSOR REMARK 3 S11: 0.1761 S12: -0.1905 S13: 0.1427 REMARK 3 S21: 0.0987 S22: -0.1933 S23: -0.1740 REMARK 3 S31: -0.1204 S32: 0.2448 S33: 0.0172 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 237 A 348 REMARK 3 ORIGIN FOR THE GROUP (A): -27.5950 16.1440 43.6540 REMARK 3 T TENSOR REMARK 3 T11: 0.4339 T22: 0.2481 REMARK 3 T33: 0.3032 T12: 0.2918 REMARK 3 T13: 0.1565 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 1.7968 L22: 3.2791 REMARK 3 L33: 3.1958 L12: -0.4187 REMARK 3 L13: -0.4702 L23: -1.4705 REMARK 3 S TENSOR REMARK 3 S11: -0.1216 S12: 0.0121 S13: -0.1598 REMARK 3 S21: -0.7702 S22: -0.3091 S23: -0.7132 REMARK 3 S31: 0.9677 S32: 0.6692 S33: 0.4307 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 349 A 368 REMARK 3 ORIGIN FOR THE GROUP (A): -45.6190 43.9420 45.2700 REMARK 3 T TENSOR REMARK 3 T11: -0.0092 T22: 0.2385 REMARK 3 T33: 0.1525 T12: 0.0769 REMARK 3 T13: 0.0169 T23: -0.0267 REMARK 3 L TENSOR REMARK 3 L11: 11.2443 L22: 12.3201 REMARK 3 L33: 4.7403 L12: -7.3831 REMARK 3 L13: -4.6434 L23: 4.3692 REMARK 3 S TENSOR REMARK 3 S11: -0.2474 S12: -1.1549 S13: 0.4159 REMARK 3 S21: 0.1865 S22: 0.3623 S23: 0.5626 REMARK 3 S31: -0.1166 S32: 0.1043 S33: -0.1148 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. THE ELECTRON DENISTY FOR RESIDUES 31-38, REMARK 3 263-265, 273-275 WAS DIFFICULT TO INTERPRET AND MAY BE POORLY REMARK 3 MODELLED. REMARK 4 REMARK 4 2HOE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1000038575. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.891940, 0.979083, 0.979251 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14118 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.460 REMARK 200 RESOLUTION RANGE LOW (A) : 46.029 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 5.420 REMARK 200 R MERGE (I) : 0.12500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.91000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.790 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: REFLECTIONS WITHIN THE 3.72-3.63 ANGSTROM RANGE WERE REMARK 200 EXCLUDED FROM DATA PROCESSING BECAUSE OF AN ICE RING. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M KTHIOCYANATE, 20.0% PEG-3350, NO REMARK 280 BUFFER, PH 7.0, VAPOR DIFFUSION, SITTING DROP, NANODROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 1 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -Y,-X,-Z+2/3 REMARK 290 5555 -X+Y,Y,-Z+1/3 REMARK 290 6555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.98333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 115.96667 REMARK 290 SMTRY1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 115.96667 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 57.98333 REMARK 290 SMTRY1 6 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 115.96667 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 PRO A 2 REMARK 465 LYS A 3 REMARK 465 SER A 4 REMARK 465 VAL A 5 REMARK 465 ARG A 6 REMARK 465 ALA A 7 REMARK 465 GLU A 8 REMARK 465 ASN A 9 REMARK 465 LYS A 59 REMARK 465 GLY A 60 REMARK 465 VAL A 61 REMARK 465 GLY A 62 REMARK 465 SER A 266 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 12 NE CZ NH1 NH2 REMARK 470 LYS A 15 CG CD CE NZ REMARK 470 LYS A 19 CD CE NZ REMARK 470 GLU A 29 CD OE1 OE2 REMARK 470 LEU A 31 CD1 CD2 REMARK 470 LEU A 33 CG CD1 CD2 REMARK 470 THR A 36 OG1 CG2 REMARK 470 GLU A 40 CB CG CD OE1 OE2 REMARK 470 LYS A 43 CB CG CD CE NZ REMARK 470 ILE A 44 CG1 CG2 CD1 REMARK 470 GLU A 47 OE1 OE2 REMARK 470 ARG A 63 CB CG CD NE CZ NH1 NH2 REMARK 470 LYS A 66 CD CE NZ REMARK 470 LYS A 69 CD CE NZ REMARK 470 ARG A 84 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 112 NE CZ NH1 NH2 REMARK 470 GLU A 151 CD OE1 OE2 REMARK 470 ARG A 152 CZ NH1 NH2 REMARK 470 ARG A 159 CD NE CZ NH1 NH2 REMARK 470 ASN A 160 OD1 ND2 REMARK 470 LYS A 198 CG CD CE NZ REMARK 470 LYS A 210 CG CD CE NZ REMARK 470 GLU A 243 CG CD OE1 OE2 REMARK 470 LYS A 258 CD CE NZ REMARK 470 LEU A 261 CG CD1 CD2 REMARK 470 LEU A 268 CG CD1 CD2 REMARK 470 ASP A 273 CG OD1 OD2 REMARK 470 SER A 274 CB OG REMARK 470 GLU A 317 CD OE1 OE2 REMARK 470 ASN A 318 CB CG OD1 ND2 REMARK 470 LYS A 321 CD CE NZ REMARK 470 LYS A 322 CD CE NZ REMARK 470 LYS A 324 CD CE NZ REMARK 470 LYS A 334 CG CD CE NZ REMARK 470 LYS A 343 NZ REMARK 470 GLN A 345 CB CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 11 -101.62 -128.75 REMARK 500 LEU A 33 177.99 175.36 REMARK 500 GLN A 109 82.75 54.83 REMARK 500 SER A 135 -156.34 -119.44 REMARK 500 ASN A 160 98.85 -55.30 REMARK 500 ASP A 201 -160.18 -100.27 REMARK 500 LYS A 210 -51.07 84.79 REMARK 500 ASN A 252 123.74 -36.60 REMARK 500 GLU A 270 -37.65 -37.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 369 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 184 OD1 REMARK 620 2 ASP A 187 OD1 83.1 REMARK 620 3 ALA A 214 O 115.6 87.0 REMARK 620 4 ALA A 230 O 150.0 122.1 84.2 REMARK 620 5 HOH A 372 O 78.6 120.9 151.0 74.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 369 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 370 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 359804 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHH FOLLOWED BY THE TARGET SEQUENCE. DBREF 2HOE A 1 368 UNP Q9X0V1 Q9X0V1_THEMA 1 368 SEQADV 2HOE MSE A -11 UNP Q9X0V1 EXPRESSION TAG SEQADV 2HOE GLY A -10 UNP Q9X0V1 EXPRESSION TAG SEQADV 2HOE SER A -9 UNP Q9X0V1 EXPRESSION TAG SEQADV 2HOE ASP A -8 UNP Q9X0V1 EXPRESSION TAG SEQADV 2HOE LYS A -7 UNP Q9X0V1 EXPRESSION TAG SEQADV 2HOE ILE A -6 UNP Q9X0V1 EXPRESSION TAG SEQADV 2HOE HIS A -5 UNP Q9X0V1 EXPRESSION TAG SEQADV 2HOE HIS A -4 UNP Q9X0V1 EXPRESSION TAG SEQADV 2HOE HIS A -3 UNP Q9X0V1 EXPRESSION TAG SEQADV 2HOE HIS A -2 UNP Q9X0V1 EXPRESSION TAG SEQADV 2HOE HIS A -1 UNP Q9X0V1 EXPRESSION TAG SEQADV 2HOE HIS A 0 UNP Q9X0V1 EXPRESSION TAG SEQADV 2HOE MSE A 1 UNP Q9X0V1 MET 1 MODIFIED RESIDUE SEQADV 2HOE MSE A 18 UNP Q9X0V1 MET 18 MODIFIED RESIDUE SEQADV 2HOE MSE A 96 UNP Q9X0V1 MET 96 MODIFIED RESIDUE SEQADV 2HOE MSE A 119 UNP Q9X0V1 MET 119 MODIFIED RESIDUE SEQADV 2HOE MSE A 129 UNP Q9X0V1 MET 129 MODIFIED RESIDUE SEQADV 2HOE MSE A 130 UNP Q9X0V1 MET 130 MODIFIED RESIDUE SEQADV 2HOE MSE A 188 UNP Q9X0V1 MET 188 MODIFIED RESIDUE SEQADV 2HOE MSE A 263 UNP Q9X0V1 MET 263 MODIFIED RESIDUE SEQADV 2HOE MSE A 339 UNP Q9X0V1 MET 339 MODIFIED RESIDUE SEQRES 1 A 380 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 A 380 PRO LYS SER VAL ARG ALA GLU ASN ILE SER ARG ILE LEU SEQRES 3 A 380 LYS ARG ILE MSE LYS SER PRO VAL SER ARG VAL GLU LEU SEQRES 4 A 380 ALA GLU GLU LEU GLY LEU THR LYS THR THR VAL GLY GLU SEQRES 5 A 380 ILE ALA LYS ILE PHE LEU GLU LYS GLY ILE VAL VAL GLU SEQRES 6 A 380 GLU LYS ASP SER PRO LYS GLY VAL GLY ARG PRO THR LYS SEQRES 7 A 380 SER LEU LYS ILE SER PRO ASN CYS ALA TYR VAL LEU GLY SEQRES 8 A 380 ILE GLU VAL THR ARG ASP GLU ILE ALA ALA CYS LEU ILE SEQRES 9 A 380 ASP ALA SER MSE ASN ILE LEU ALA HIS GLU ALA HIS PRO SEQRES 10 A 380 LEU PRO SER GLN SER ASP ARG GLU GLU THR LEU ASN VAL SEQRES 11 A 380 MSE TYR ARG ILE ILE ASP ARG ALA LYS ASP MSE MSE GLU SEQRES 12 A 380 LYS LEU GLY SER LYS LEU SER ALA LEU THR VAL ALA ALA SEQRES 13 A 380 PRO GLY PRO ILE ASP THR GLU ARG GLY ILE ILE ILE ASP SEQRES 14 A 380 PRO ARG ASN PHE PRO LEU SER GLN ILE PRO LEU ALA ASN SEQRES 15 A 380 LEU LEU LYS GLU LYS TYR GLY ILE GLU VAL TRP VAL GLU SEQRES 16 A 380 ASN ASP ALA ASP MSE GLY ALA VAL GLY GLU LYS TRP TYR SEQRES 17 A 380 THR LYS ARG ASP ASP SER PHE ALA TRP ILE LEU THR GLY SEQRES 18 A 380 LYS GLY ILE GLY ALA GLY ILE ILE ILE ASP GLY GLU LEU SEQRES 19 A 380 TYR ARG GLY GLU ASN GLY TYR ALA GLY GLU ILE GLY TYR SEQRES 20 A 380 THR ARG VAL PHE ASN GLY ASN GLU TYR VAL PHE LEU GLU SEQRES 21 A 380 ASP VAL CYS ASN GLU ASN VAL VAL LEU LYS HIS VAL LEU SEQRES 22 A 380 SER MSE GLY PHE SER SER LEU ALA GLU ALA ARG ASP SER SEQRES 23 A 380 GLY ASP VAL ARG VAL LYS GLU TYR PHE ASP ASP ILE ALA SEQRES 24 A 380 ARG TYR PHE SER ILE GLY LEU LEU ASN LEU ILE HIS LEU SEQRES 25 A 380 PHE GLY ILE SER LYS ILE VAL ILE GLY GLY PHE PHE LYS SEQRES 26 A 380 GLU LEU GLY GLU ASN PHE LEU LYS LYS ILE LYS ILE GLU SEQRES 27 A 380 VAL GLU THR HIS LEU LEU TYR LYS HIS SER VAL ASP MSE SEQRES 28 A 380 SER PHE SER LYS VAL GLN GLU PRO VAL ILE ALA PHE GLY SEQRES 29 A 380 ALA ALA VAL HIS ALA LEU GLU ASN TYR LEU GLU ARG VAL SEQRES 30 A 380 THR THR SER MODRES 2HOE MSE A 18 MET SELENOMETHIONINE MODRES 2HOE MSE A 96 MET SELENOMETHIONINE MODRES 2HOE MSE A 119 MET SELENOMETHIONINE MODRES 2HOE MSE A 129 MET SELENOMETHIONINE MODRES 2HOE MSE A 130 MET SELENOMETHIONINE MODRES 2HOE MSE A 188 MET SELENOMETHIONINE MODRES 2HOE MSE A 263 MET SELENOMETHIONINE MODRES 2HOE MSE A 339 MET SELENOMETHIONINE HET MSE A 18 8 HET MSE A 96 8 HET MSE A 119 8 HET MSE A 129 8 HET MSE A 130 8 HET MSE A 188 8 HET MSE A 263 8 HET MSE A 339 8 HET K A 369 1 HET GOL A 370 6 HETNAM MSE SELENOMETHIONINE HETNAM K POTASSIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 2 K K 1+ FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *15(H2 O) HELIX 1 1 ILE A 13 SER A 20 1 8 HELIX 2 2 SER A 23 GLY A 32 1 10 HELIX 3 3 THR A 34 LYS A 48 1 15 HELIX 4 4 PRO A 72 CYS A 74 5 3 HELIX 5 5 ASP A 111 LEU A 133 1 23 HELIX 6 6 PRO A 167 GLY A 177 1 11 HELIX 7 7 ASP A 185 THR A 197 1 13 HELIX 8 8 GLU A 232 TYR A 235 5 4 HELIX 9 9 LEU A 247 ASN A 252 1 6 HELIX 10 10 ASN A 252 GLY A 264 1 13 HELIX 11 11 ALA A 269 SER A 274 1 6 HELIX 12 12 ASP A 276 GLY A 302 1 27 HELIX 13 13 PHE A 312 GLU A 314 5 3 HELIX 14 14 LEU A 315 LEU A 331 1 17 HELIX 15 15 PRO A 347 THR A 367 1 21 SHEET 1 A 2 VAL A 51 LYS A 55 0 SHEET 2 A 2 LYS A 66 ILE A 70 -1 O SER A 67 N GLU A 54 SHEET 1 B 5 ILE A 98 PRO A 105 0 SHEET 2 B 5 GLU A 86 ASP A 93 -1 N ILE A 87 O HIS A 104 SHEET 3 B 5 TYR A 76 VAL A 82 -1 N VAL A 77 O ILE A 92 SHEET 4 B 5 ALA A 139 ALA A 144 1 O ALA A 143 N ILE A 80 SHEET 5 B 5 GLU A 179 ASN A 184 1 O TRP A 181 N VAL A 142 SHEET 1 C 2 ILE A 148 ASP A 149 0 SHEET 2 C 2 ILE A 154 ILE A 155 -1 O ILE A 154 N ASP A 149 SHEET 1 D 5 GLU A 221 LEU A 222 0 SHEET 2 D 5 GLY A 213 ILE A 218 -1 N ILE A 218 O GLU A 221 SHEET 3 D 5 PHE A 203 THR A 208 -1 N TRP A 205 O GLY A 215 SHEET 4 D 5 LYS A 305 GLY A 310 1 O VAL A 307 N ILE A 206 SHEET 5 D 5 ASP A 338 PHE A 341 1 O SER A 340 N ILE A 308 SHEET 1 E 2 ARG A 237 PHE A 239 0 SHEET 2 E 2 TYR A 244 PHE A 246 -1 O VAL A 245 N VAL A 238 LINK C ILE A 17 N MSE A 18 1555 1555 1.33 LINK C MSE A 18 N LYS A 19 1555 1555 1.34 LINK C SER A 95 N MSE A 96 1555 1555 1.33 LINK C MSE A 96 N ASN A 97 1555 1555 1.34 LINK C VAL A 118 N MSE A 119 1555 1555 1.32 LINK C MSE A 119 N TYR A 120 1555 1555 1.33 LINK C ASP A 128 N MSE A 129 1555 1555 1.33 LINK C MSE A 129 N MSE A 130 1555 1555 1.33 LINK C MSE A 130 N GLU A 131 1555 1555 1.33 LINK C ASP A 187 N MSE A 188 1555 1555 1.33 LINK C MSE A 188 N GLY A 189 1555 1555 1.33 LINK C SER A 262 N MSE A 263 1555 1555 1.34 LINK C MSE A 263 N GLY A 264 1555 1555 1.33 LINK C ASP A 338 N MSE A 339 1555 1555 1.32 LINK C MSE A 339 N SER A 340 1555 1555 1.32 LINK OD1 ASN A 184 K K A 369 1555 1555 2.84 LINK OD1 ASP A 187 K K A 369 1555 1555 2.74 LINK O ALA A 214 K K A 369 1555 1555 2.72 LINK O ALA A 230 K K A 369 1555 1555 2.53 LINK K K A 369 O HOH A 372 1555 1555 2.75 CISPEP 1 GLU A 346 PRO A 347 0 -2.49 SITE 1 AC1 5 ASN A 184 ASP A 187 ALA A 214 ALA A 230 SITE 2 AC1 5 HOH A 372 SITE 1 AC2 8 PRO A 145 GLY A 146 ASN A 184 ASP A 185 SITE 2 AC2 8 LEU A 207 ILE A 212 GLY A 213 GLU A 232 CRYST1 62.599 62.599 173.950 90.00 90.00 120.00 P 31 1 2 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015980 0.009220 0.000000 0.00000 SCALE2 0.000000 0.018450 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005750 0.00000