data_2HOM # _entry.id 2HOM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2HOM pdb_00002hom 10.2210/pdb2hom/pdb NDB UR0102 ? ? RCSB RCSB038582 ? ? WWPDB D_1000038582 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-09-19 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 21 4 'Structure model' '_pdbx_struct_conn_angle.value' 22 4 'Structure model' '_struct_conn.pdbx_dist_value' 23 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 24 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 29 4 'Structure model' '_struct_conn.ptnr1_symmetry' 30 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 31 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 32 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 33 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 34 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 35 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 36 4 'Structure model' '_struct_conn.ptnr2_symmetry' 37 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 38 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 39 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 2HOM _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2006-07-14 _pdbx_database_status.SG_entry N _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2HOJ 'Mn, 2.5 Ang resolution, TPP' unspecified PDB 2HOK 'Ca, 3.2 Ang resolution, TPP' unspecified PDB 2HOL 'Ba, 2.9 Ang resolution, TPP' unspecified PDB 2HOO '3.0 Ang resolution, BzTP (BENFOTIAMINE)' unspecified PDB 2HOP '2.5 Ang resolution, pyrithiamine' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Edwards, T.E.' 1 ;Ferre-D'Amare, A.R. ; 2 # _citation.id primary _citation.title 'Crystal Structures of the Thi-Box Riboswitch Bound to Thiamine Pyrophosphate Analogs Reveal Adaptive RNA-Small Molecule Recognition' _citation.journal_abbrev Structure _citation.journal_volume 14 _citation.page_first 1459 _citation.page_last 1468 _citation.year 2006 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16962976 _citation.pdbx_database_id_DOI 10.1016/j.str.2006.07.008 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Edwards, T.E.' 1 ? primary ;Ferre-D'Amare, A.R. ; 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'thi-box riboswitch' 26798.936 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 4 ? ? ? ? 3 non-polymer syn 'CALCIUM ION' 40.078 2 ? ? ? ? 4 non-polymer syn 'THIAMIN PHOSPHATE' 345.334 1 ? ? ? ? 5 water nat water 18.015 5 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GCGACUCGGGGUGCCCUUCUGCGUGAAGGCUGAGAAAUACCCGUAUCACCUGAUCUGGAUAAUGCCAGCGUAGGGAAGUC GCA ; _entity_poly.pdbx_seq_one_letter_code_can ;GCGACUCGGGGUGCCCUUCUGCGUGAAGGCUGAGAAAUACCCGUAUCACCUGAUCUGGAUAAUGCCAGCGUAGGGAAGUC GCA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 'CALCIUM ION' CA 4 'THIAMIN PHOSPHATE' TPS 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 G n 1 4 A n 1 5 C n 1 6 U n 1 7 C n 1 8 G n 1 9 G n 1 10 G n 1 11 G n 1 12 U n 1 13 G n 1 14 C n 1 15 C n 1 16 C n 1 17 U n 1 18 U n 1 19 C n 1 20 U n 1 21 G n 1 22 C n 1 23 G n 1 24 U n 1 25 G n 1 26 A n 1 27 A n 1 28 G n 1 29 G n 1 30 C n 1 31 U n 1 32 G n 1 33 A n 1 34 G n 1 35 A n 1 36 A n 1 37 A n 1 38 U n 1 39 A n 1 40 C n 1 41 C n 1 42 C n 1 43 G n 1 44 U n 1 45 A n 1 46 U n 1 47 C n 1 48 A n 1 49 C n 1 50 C n 1 51 U n 1 52 G n 1 53 A n 1 54 U n 1 55 C n 1 56 U n 1 57 G n 1 58 G n 1 59 A n 1 60 U n 1 61 A n 1 62 A n 1 63 U n 1 64 G n 1 65 C n 1 66 C n 1 67 A n 1 68 G n 1 69 C n 1 70 G n 1 71 U n 1 72 A n 1 73 G n 1 74 G n 1 75 G n 1 76 A n 1 77 A n 1 78 G n 1 79 U n 1 80 C n 1 81 G n 1 82 C n 1 83 A n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details ;in vitro T7 RNA polymerase with 5'cis-hammerhead ribozyme and 5'-trans VS ribozyme ; # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 TPS non-polymer . 'THIAMIN PHOSPHATE' ? 'C12 H18 N4 O4 P S 1' 345.334 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 9 9 G G A . n A 1 2 C 2 10 10 C C A . n A 1 3 G 3 11 11 G G A . n A 1 4 A 4 12 12 A A A . n A 1 5 C 5 13 13 C C A . n A 1 6 U 6 14 14 U U A . n A 1 7 C 7 15 15 C C A . n A 1 8 G 8 16 16 G G A . n A 1 9 G 9 17 17 G G A . n A 1 10 G 10 18 18 G G A . n A 1 11 G 11 19 19 G G A . n A 1 12 U 12 20 20 U U A . n A 1 13 G 13 21 21 G G A . n A 1 14 C 14 22 22 C C A . n A 1 15 C 15 23 23 C C A . n A 1 16 C 16 24 24 C C A . n A 1 17 U 17 25 25 U U A . n A 1 18 U 18 26 ? ? ? A . n A 1 19 C 19 27 ? ? ? A . n A 1 20 U 20 28 ? ? ? A . n A 1 21 G 21 29 29 G G A . n A 1 22 C 22 30 30 C C A . n A 1 23 G 23 31 31 G G A . n A 1 24 U 24 32 32 U U A . n A 1 25 G 25 33 33 G G A . n A 1 26 A 26 34 34 A A A . n A 1 27 A 27 35 35 A A A . n A 1 28 G 28 36 36 G G A . n A 1 29 G 29 37 37 G G A . n A 1 30 C 30 38 38 C C A . n A 1 31 U 31 39 39 U U A . n A 1 32 G 32 40 40 G G A . n A 1 33 A 33 41 41 A A A . n A 1 34 G 34 42 42 G G A . n A 1 35 A 35 43 43 A A A . n A 1 36 A 36 44 44 A A A . n A 1 37 A 37 45 45 A A A . n A 1 38 U 38 46 46 U U A . n A 1 39 A 39 47 47 A A A . n A 1 40 C 40 48 48 C C A . n A 1 41 C 41 49 49 C C A . n A 1 42 C 42 50 50 C C A . n A 1 43 G 43 51 51 G G A . n A 1 44 U 44 52 52 U U A . n A 1 45 A 45 53 53 A A A . n A 1 46 U 46 54 54 U U A . n A 1 47 C 47 55 55 C C A . n A 1 48 A 48 56 56 A A A . n A 1 49 C 49 57 57 C C A . n A 1 50 C 50 58 58 C C A . n A 1 51 U 51 59 59 U U A . n A 1 52 G 52 60 60 G G A . n A 1 53 A 53 61 61 A A A . n A 1 54 U 54 62 62 U U A . n A 1 55 C 55 63 63 C C A . n A 1 56 U 56 64 64 U U A . n A 1 57 G 57 65 65 G G A . n A 1 58 G 58 66 66 G G A . n A 1 59 A 59 67 67 A A A . n A 1 60 U 60 68 68 U U A . n A 1 61 A 61 69 69 A A A . n A 1 62 A 62 70 70 A A A . n A 1 63 U 63 71 71 U U A . n A 1 64 G 64 72 72 G G A . n A 1 65 C 65 73 73 C C A . n A 1 66 C 66 74 74 C C A . n A 1 67 A 67 75 75 A A A . n A 1 68 G 68 76 76 G G A . n A 1 69 C 69 77 77 C C A . n A 1 70 G 70 78 78 G G A . n A 1 71 U 71 79 79 U U A . n A 1 72 A 72 80 80 A A A . n A 1 73 G 73 81 81 G G A . n A 1 74 G 74 82 82 G G A . n A 1 75 G 75 83 83 G G A . n A 1 76 A 76 84 84 A A A . n A 1 77 A 77 85 85 A A A . n A 1 78 G 78 86 86 G G A . n A 1 79 U 79 87 87 U U A . n A 1 80 C 80 88 88 C C A . n A 1 81 G 81 89 89 G G A . n A 1 82 C 82 90 90 C C A . n A 1 83 A 83 91 91 A A A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 98 98 MG MG A . C 2 MG 1 99 99 MG MG A . D 3 CA 1 100 100 CA CA A . E 2 MG 1 101 101 MG MG A . F 3 CA 1 102 102 CA CA A . G 2 MG 1 103 103 MG MG A . H 4 TPS 1 97 97 TPS TPS A . I 5 HOH 1 92 92 HOH HOH A . I 5 HOH 2 93 93 HOH HOH A . I 5 HOH 3 94 94 HOH HOH A . I 5 HOH 4 95 95 HOH HOH A . I 5 HOH 5 96 96 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A U 46 ? N1 ? A U 38 N1 2 1 Y 1 A U 46 ? C2 ? A U 38 C2 3 1 Y 1 A U 46 ? O2 ? A U 38 O2 4 1 Y 1 A U 46 ? N3 ? A U 38 N3 5 1 Y 1 A U 46 ? C4 ? A U 38 C4 6 1 Y 1 A U 46 ? O4 ? A U 38 O4 7 1 Y 1 A U 46 ? C5 ? A U 38 C5 8 1 Y 1 A U 46 ? C6 ? A U 38 C6 9 1 Y 1 A U 54 ? N1 ? A U 46 N1 10 1 Y 1 A U 54 ? C2 ? A U 46 C2 11 1 Y 1 A U 54 ? O2 ? A U 46 O2 12 1 Y 1 A U 54 ? N3 ? A U 46 N3 13 1 Y 1 A U 54 ? C4 ? A U 46 C4 14 1 Y 1 A U 54 ? O4 ? A U 46 O4 15 1 Y 1 A U 54 ? C5 ? A U 46 C5 16 1 Y 1 A U 54 ? C6 ? A U 46 C6 17 1 Y 1 A C 55 ? N1 ? A C 47 N1 18 1 Y 1 A C 55 ? C2 ? A C 47 C2 19 1 Y 1 A C 55 ? O2 ? A C 47 O2 20 1 Y 1 A C 55 ? N3 ? A C 47 N3 21 1 Y 1 A C 55 ? C4 ? A C 47 C4 22 1 Y 1 A C 55 ? N4 ? A C 47 N4 23 1 Y 1 A C 55 ? C5 ? A C 47 C5 24 1 Y 1 A C 55 ? C6 ? A C 47 C6 25 1 Y 1 A U 79 ? N1 ? A U 71 N1 26 1 Y 1 A U 79 ? C2 ? A U 71 C2 27 1 Y 1 A U 79 ? O2 ? A U 71 O2 28 1 Y 1 A U 79 ? N3 ? A U 71 N3 29 1 Y 1 A U 79 ? C4 ? A U 71 C4 30 1 Y 1 A U 79 ? O4 ? A U 71 O4 31 1 Y 1 A U 79 ? C5 ? A U 71 C5 32 1 Y 1 A U 79 ? C6 ? A U 71 C6 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement . ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 CNS phasing . ? 4 # _cell.entry_id 2HOM _cell.length_a 65.700 _cell.length_b 65.700 _cell.length_c 101.700 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2HOM _symmetry.space_group_name_H-M 'P 32 1 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 153 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.entry_id 2HOM _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.36 _exptl_crystal.density_percent_sol 47.98 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details ;growth: 29% PEG 2000, 15 mM CaCl2, 0.2 M NH4Cl, 50 mM succinate pH 7; 0.25 mM TMP, 0.25 mM spermine, 1.5 mM MgCl2, 50 mM KCl; cryo: above with 15% w/v sucrose; 500 x 70 x 70 um crystal, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 295K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'PEG 2000' ? ? ? 1 2 1 CaCl2 ? ? ? 1 3 1 NH4Cl ? ? ? 1 4 1 MgCl2 ? ? ? 1 5 1 KCl ? ? ? 1 6 1 succinate ? ? ? 1 7 1 spermine ? ? ? 1 8 1 cacodylate ? ? ? 1 9 1 TMP ? ? ? 1 10 2 'PEG 2000' ? ? ? 1 11 2 CaCl2 ? ? ? 1 12 2 NH4Cl ? ? ? 1 13 2 MgCl2 ? ? ? 1 14 2 KCl ? ? ? 1 15 2 succinate ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 2005-07-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.95 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.2.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.2.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.95 # _reflns.entry_id 2HOM _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2.89 _reflns.d_resolution_low 30 _reflns.number_all 5542 _reflns.number_obs 5263 _reflns.percent_possible_obs 92.6 _reflns.pdbx_Rmerge_I_obs 0.124 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 16.4 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.4 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.89 _reflns_shell.d_res_low 2.95 _reflns_shell.percent_possible_all 52.6 _reflns_shell.Rmerge_I_obs 0.39 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.1 _reflns_shell.pdbx_redundancy 2.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 201 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2HOM _refine.ls_d_res_high 2.89 _refine.ls_d_res_low 30 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 6049 _refine.ls_number_reflns_obs 5263 _refine.ls_number_reflns_R_free 553 _refine.ls_percent_reflns_obs 87.0 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_work 0.203 _refine.ls_R_factor_R_free 0.266 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean 79.1 _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2HOM _refine_analyze.Luzzati_coordinate_error_obs 0.38 _refine_analyze.Luzzati_sigma_a_obs 0.57 _refine_analyze.Luzzati_d_res_low_obs 5 _refine_analyze.Luzzati_coordinate_error_free 0.50 _refine_analyze.Luzzati_sigma_a_free 0.53 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1681 _refine_hist.pdbx_number_atoms_ligand 28 _refine_hist.number_atoms_solvent 5 _refine_hist.number_atoms_total 1714 _refine_hist.d_res_high 2.89 _refine_hist.d_res_low 30 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.28 ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 2HOM _struct.title 'Crystal structure of an E. coli thi-box riboswitch bound to thiamine monophosphate' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2HOM _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RNA; riboswitch, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 3 ? G N N 2 ? H N N 4 ? I N N 5 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2HOM _struct_ref.pdbx_db_accession 2HOM _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2HOM _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 83 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2HOM _struct_ref_seq.db_align_beg 9 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 91 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 9 _struct_ref_seq.pdbx_auth_seq_align_end 91 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details 'The biological assembly is a monomer' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A G 52 O6 ? ? ? 1_555 B MG . MG ? ? A G 60 A MG 98 1_555 ? ? ? ? ? ? ? 2.511 ? ? metalc2 metalc ? ? A U 54 "O2'" ? ? ? 1_555 G MG . MG ? ? A U 62 A MG 103 1_555 ? ? ? ? ? ? ? 2.515 ? ? metalc3 metalc ? ? A U 54 "O3'" ? ? ? 1_555 G MG . MG ? ? A U 62 A MG 103 1_555 ? ? ? ? ? ? ? 3.031 ? ? metalc4 metalc ? ? A C 55 OP1 ? ? ? 1_555 D CA . CA ? ? A C 63 A CA 100 1_555 ? ? ? ? ? ? ? 2.207 ? ? metalc5 metalc ? ? A C 55 "O5'" ? ? ? 1_555 G MG . MG ? ? A C 63 A MG 103 1_555 ? ? ? ? ? ? ? 2.829 ? ? metalc6 metalc ? ? A U 56 OP2 ? ? ? 1_555 D CA . CA ? ? A U 64 A CA 100 1_555 ? ? ? ? ? ? ? 2.312 ? ? metalc7 metalc ? ? A U 56 OP1 ? ? ? 5_656 D CA . CA ? ? A U 64 A CA 100 1_555 ? ? ? ? ? ? ? 2.370 ? ? metalc8 metalc ? ? A U 56 OP1 ? ? ? 5_656 G MG . MG ? ? A U 64 A MG 103 1_555 ? ? ? ? ? ? ? 2.818 ? ? metalc9 metalc ? ? A A 61 OP1 ? ? ? 1_555 F CA . CA ? ? A A 69 A CA 102 1_555 ? ? ? ? ? ? ? 2.336 ? ? metalc10 metalc ? ? A G 70 O6 ? ? ? 1_555 B MG . MG ? ? A G 78 A MG 98 1_555 ? ? ? ? ? ? ? 2.208 ? ? metalc11 metalc ? ? A G 70 N1 ? ? ? 1_555 B MG . MG ? ? A G 78 A MG 98 1_555 ? ? ? ? ? ? ? 3.014 ? ? metalc12 metalc ? ? A A 83 "O3'" ? ? ? 6_566 F CA . CA ? ? A A 91 A CA 102 1_555 ? ? ? ? ? ? ? 3.156 ? ? metalc13 metalc ? ? I HOH . O ? ? ? 1_555 E MG . MG ? ? A HOH 92 A MG 101 1_555 ? ? ? ? ? ? ? 2.370 ? ? metalc14 metalc ? ? I HOH . O ? ? ? 1_555 E MG . MG ? ? A HOH 93 A MG 101 1_555 ? ? ? ? ? ? ? 2.898 ? ? metalc15 metalc ? ? I HOH . O ? ? ? 1_555 E MG . MG ? ? A HOH 94 A MG 101 1_555 ? ? ? ? ? ? ? 2.729 ? ? metalc16 metalc ? ? I HOH . O ? ? ? 1_555 B MG . MG ? ? A HOH 96 A MG 98 1_555 ? ? ? ? ? ? ? 2.341 ? ? metalc17 metalc ? ? H TPS . O2 ? ? ? 1_555 B MG . MG ? ? A TPS 97 A MG 98 1_555 ? ? ? ? ? ? ? 2.821 ? ? metalc18 metalc ? ? H TPS . O3 ? ? ? 1_555 B MG . MG ? ? A TPS 97 A MG 98 1_555 ? ? ? ? ? ? ? 2.518 ? ? metalc19 metalc ? ? H TPS . O1 ? ? ? 1_555 C MG . MG ? ? A TPS 97 A MG 99 1_555 ? ? ? ? ? ? ? 2.928 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 82 N3 ? ? A G 9 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 82 O2 ? ? A G 9 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 82 N4 ? ? A G 9 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 81 N1 ? ? A C 10 A G 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 81 O6 ? ? A C 10 A G 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 81 N2 ? ? A C 10 A G 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 80 N3 ? ? A G 11 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 80 O2 ? ? A G 11 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 80 N4 ? ? A G 11 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 79 N3 ? ? A A 12 A U 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 79 O4 ? ? A A 12 A U 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 78 N1 ? ? A C 13 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 78 O6 ? ? A C 13 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 78 N2 ? ? A C 13 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 77 N1 ? ? A U 14 A A 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 77 N6 ? ? A U 14 A A 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 7 N3 ? ? ? 1_555 A G 43 N1 ? ? A C 15 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 43 O6 ? ? A C 15 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 43 N2 ? ? A C 15 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 42 N3 ? ? A G 16 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 8 N2 ? ? ? 1_555 A C 42 O2 ? ? A G 16 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 8 O6 ? ? ? 1_555 A C 42 N4 ? ? A G 16 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 8 N2 ? ? ? 1_555 A A 76 N3 ? ? A G 16 A A 84 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog24 hydrog ? ? A G 9 N1 ? ? ? 1_555 A C 41 N3 ? ? A G 17 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 9 N2 ? ? ? 1_555 A C 41 O2 ? ? A G 17 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 9 O6 ? ? ? 1_555 A C 41 N4 ? ? A G 17 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 9 N2 ? ? ? 1_555 A A 48 N3 ? ? A G 17 A A 56 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog28 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 40 N3 ? ? A G 18 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 40 O2 ? ? A G 18 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 40 N4 ? ? A G 18 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 11 N2 ? ? ? 1_555 A G 34 N3 ? ? A G 19 A G 42 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog32 hydrog ? ? A G 11 N3 ? ? ? 1_555 A G 34 N2 ? ? A G 19 A G 42 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog33 hydrog ? ? A G 11 N1 ? ? ? 1_555 A A 39 N1 ? ? A G 19 A A 47 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog34 hydrog ? ? A G 11 O6 ? ? ? 1_555 A A 39 N6 ? ? A G 19 A A 47 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog35 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 37 N1 ? ? A U 20 A A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 37 N6 ? ? A U 20 A A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 13 N1 ? ? ? 1_555 A C 30 N3 ? ? A G 21 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 13 N2 ? ? ? 1_555 A C 30 O2 ? ? A G 21 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 13 O6 ? ? ? 1_555 A C 30 N4 ? ? A G 21 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 13 N2 ? ? ? 1_555 A U 63 O2 ? ? A G 21 A U 71 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog41 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 29 N1 ? ? A C 22 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 29 O6 ? ? A C 22 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 29 N2 ? ? A C 22 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 28 N1 ? ? A C 23 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 28 O6 ? ? A C 23 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 28 N2 ? ? A C 23 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 16 O2 ? ? ? 1_555 A A 27 N6 ? ? A C 24 A A 35 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog48 hydrog ? ? A U 17 O4 ? ? ? 1_555 A G 28 N2 ? ? A U 25 A G 36 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog49 hydrog ? ? A G 29 N2 ? ? ? 1_555 A A 61 N1 ? ? A G 37 A A 69 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog50 hydrog ? ? A U 31 N3 ? ? ? 1_555 A A 35 N7 ? ? A U 39 A A 43 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog51 hydrog ? ? A U 31 O2 ? ? ? 1_555 A A 35 N6 ? ? A U 39 A A 43 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog52 hydrog ? ? A A 45 N6 ? ? ? 1_555 A A 76 N7 ? ? A A 53 A A 84 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog53 hydrog ? ? A A 45 N7 ? ? ? 1_555 A A 76 N6 ? ? A A 53 A A 84 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog54 hydrog ? ? A A 48 N6 ? ? ? 1_555 A G 75 N3 ? ? A A 56 A G 83 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog55 hydrog ? ? A A 48 N7 ? ? ? 1_555 A G 75 N2 ? ? A A 56 A G 83 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog56 hydrog ? ? A C 49 N3 ? ? ? 1_555 A G 74 N1 ? ? A C 57 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A C 49 N4 ? ? ? 1_555 A G 74 O6 ? ? A C 57 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A C 49 O2 ? ? ? 1_555 A G 74 N2 ? ? A C 57 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A C 50 N3 ? ? ? 1_555 A G 73 N1 ? ? A C 58 A G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A C 50 N4 ? ? ? 1_555 A G 73 O6 ? ? A C 58 A G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A C 50 O2 ? ? ? 1_555 A G 73 N2 ? ? A C 58 A G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A U 51 N3 ? ? ? 1_555 A A 72 N1 ? ? A U 59 A A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A U 51 O4 ? ? ? 1_555 A A 72 N6 ? ? A U 59 A A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A G 52 N1 ? ? ? 1_555 A G 70 O6 ? ? A G 60 A G 78 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog65 hydrog ? ? A G 52 N2 ? ? ? 1_555 A G 70 N7 ? ? A G 60 A G 78 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog66 hydrog ? ? A A 53 N6 ? ? ? 1_555 A C 69 O2 ? ? A A 61 A C 77 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog67 hydrog ? ? A C 55 N3 ? ? ? 1_555 A G 68 N1 ? ? A C 63 A G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A C 55 N4 ? ? ? 1_555 A G 68 O6 ? ? A C 63 A G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A C 55 O2 ? ? ? 1_555 A G 68 N2 ? ? A C 63 A G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A U 56 N3 ? ? ? 1_555 A A 67 N1 ? ? A U 64 A A 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A U 56 O4 ? ? ? 1_555 A A 67 N6 ? ? A U 64 A A 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A G 57 N1 ? ? ? 1_555 A C 66 N3 ? ? A G 65 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A G 57 N2 ? ? ? 1_555 A C 66 O2 ? ? A G 65 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A G 57 O6 ? ? ? 1_555 A C 66 N4 ? ? A G 65 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A G 58 N1 ? ? ? 1_555 A C 65 N3 ? ? A G 66 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A G 58 N2 ? ? ? 1_555 A C 65 O2 ? ? A G 66 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A G 58 O6 ? ? ? 1_555 A C 65 N4 ? ? A G 66 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A G 75 N3 ? ? ? 1_555 A A 76 N6 ? ? A G 83 A A 84 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A G 52 ? A G 60 ? 1_555 MG ? B MG . ? A MG 98 ? 1_555 O6 ? A G 70 ? A G 78 ? 1_555 69.2 ? 2 O6 ? A G 52 ? A G 60 ? 1_555 MG ? B MG . ? A MG 98 ? 1_555 N1 ? A G 70 ? A G 78 ? 1_555 117.8 ? 3 O6 ? A G 70 ? A G 78 ? 1_555 MG ? B MG . ? A MG 98 ? 1_555 N1 ? A G 70 ? A G 78 ? 1_555 48.6 ? 4 O6 ? A G 52 ? A G 60 ? 1_555 MG ? B MG . ? A MG 98 ? 1_555 O ? I HOH . ? A HOH 96 ? 1_555 67.5 ? 5 O6 ? A G 70 ? A G 78 ? 1_555 MG ? B MG . ? A MG 98 ? 1_555 O ? I HOH . ? A HOH 96 ? 1_555 89.8 ? 6 N1 ? A G 70 ? A G 78 ? 1_555 MG ? B MG . ? A MG 98 ? 1_555 O ? I HOH . ? A HOH 96 ? 1_555 108.3 ? 7 O6 ? A G 52 ? A G 60 ? 1_555 MG ? B MG . ? A MG 98 ? 1_555 O2 ? H TPS . ? A TPS 97 ? 1_555 167.0 ? 8 O6 ? A G 70 ? A G 78 ? 1_555 MG ? B MG . ? A MG 98 ? 1_555 O2 ? H TPS . ? A TPS 97 ? 1_555 98.1 ? 9 N1 ? A G 70 ? A G 78 ? 1_555 MG ? B MG . ? A MG 98 ? 1_555 O2 ? H TPS . ? A TPS 97 ? 1_555 49.5 ? 10 O ? I HOH . ? A HOH 96 ? 1_555 MG ? B MG . ? A MG 98 ? 1_555 O2 ? H TPS . ? A TPS 97 ? 1_555 116.8 ? 11 O6 ? A G 52 ? A G 60 ? 1_555 MG ? B MG . ? A MG 98 ? 1_555 O3 ? H TPS . ? A TPS 97 ? 1_555 135.0 ? 12 O6 ? A G 70 ? A G 78 ? 1_555 MG ? B MG . ? A MG 98 ? 1_555 O3 ? H TPS . ? A TPS 97 ? 1_555 129.7 ? 13 N1 ? A G 70 ? A G 78 ? 1_555 MG ? B MG . ? A MG 98 ? 1_555 O3 ? H TPS . ? A TPS 97 ? 1_555 92.4 ? 14 O ? I HOH . ? A HOH 96 ? 1_555 MG ? B MG . ? A MG 98 ? 1_555 O3 ? H TPS . ? A TPS 97 ? 1_555 71.9 ? 15 O2 ? H TPS . ? A TPS 97 ? 1_555 MG ? B MG . ? A MG 98 ? 1_555 O3 ? H TPS . ? A TPS 97 ? 1_555 55.3 ? 16 "O2'" ? A U 54 ? A U 62 ? 1_555 MG ? G MG . ? A MG 103 ? 1_555 "O3'" ? A U 54 ? A U 62 ? 1_555 59.3 ? 17 "O2'" ? A U 54 ? A U 62 ? 1_555 MG ? G MG . ? A MG 103 ? 1_555 "O5'" ? A C 55 ? A C 63 ? 1_555 82.0 ? 18 "O3'" ? A U 54 ? A U 62 ? 1_555 MG ? G MG . ? A MG 103 ? 1_555 "O5'" ? A C 55 ? A C 63 ? 1_555 50.2 ? 19 "O2'" ? A U 54 ? A U 62 ? 1_555 MG ? G MG . ? A MG 103 ? 1_555 OP1 ? A U 56 ? A U 64 ? 5_656 161.4 ? 20 "O3'" ? A U 54 ? A U 62 ? 1_555 MG ? G MG . ? A MG 103 ? 1_555 OP1 ? A U 56 ? A U 64 ? 5_656 112.7 ? 21 "O5'" ? A C 55 ? A C 63 ? 1_555 MG ? G MG . ? A MG 103 ? 1_555 OP1 ? A U 56 ? A U 64 ? 5_656 106.1 ? 22 OP1 ? A C 55 ? A C 63 ? 1_555 CA ? D CA . ? A CA 100 ? 1_555 OP2 ? A U 56 ? A U 64 ? 1_555 80.6 ? 23 OP1 ? A C 55 ? A C 63 ? 1_555 CA ? D CA . ? A CA 100 ? 1_555 OP1 ? A U 56 ? A U 64 ? 5_656 103.0 ? 24 OP2 ? A U 56 ? A U 64 ? 1_555 CA ? D CA . ? A CA 100 ? 1_555 OP1 ? A U 56 ? A U 64 ? 5_656 87.9 ? 25 OP1 ? A A 61 ? A A 69 ? 1_555 CA ? F CA . ? A CA 102 ? 1_555 "O3'" ? A A 83 ? A A 91 ? 6_566 107.7 ? 26 O ? I HOH . ? A HOH 92 ? 1_555 MG ? E MG . ? A MG 101 ? 1_555 O ? I HOH . ? A HOH 93 ? 1_555 64.4 ? 27 O ? I HOH . ? A HOH 92 ? 1_555 MG ? E MG . ? A MG 101 ? 1_555 O ? I HOH . ? A HOH 94 ? 1_555 72.6 ? 28 O ? I HOH . ? A HOH 93 ? 1_555 MG ? E MG . ? A MG 101 ? 1_555 O ? I HOH . ? A HOH 94 ? 1_555 59.1 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 98 ? 4 'BINDING SITE FOR RESIDUE MG A 98' AC2 Software A MG 99 ? 2 'BINDING SITE FOR RESIDUE MG A 99' AC3 Software A CA 100 ? 3 'BINDING SITE FOR RESIDUE CA A 100' AC4 Software A MG 101 ? 4 'BINDING SITE FOR RESIDUE MG A 101' AC5 Software A CA 102 ? 2 'BINDING SITE FOR RESIDUE CA A 102' AC6 Software A MG 103 ? 4 'BINDING SITE FOR RESIDUE MG A 103' AC7 Software A TPS 97 ? 12 'BINDING SITE FOR RESIDUE TPS A 97' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 G A 52 ? G A 60 . ? 1_555 ? 2 AC1 4 G A 70 ? G A 78 . ? 1_555 ? 3 AC1 4 HOH I . ? HOH A 96 . ? 1_555 ? 4 AC1 4 TPS H . ? TPS A 97 . ? 1_555 ? 5 AC2 2 C A 69 ? C A 77 . ? 1_555 ? 6 AC2 2 TPS H . ? TPS A 97 . ? 1_555 ? 7 AC3 3 C A 55 ? C A 63 . ? 1_555 ? 8 AC3 3 U A 56 ? U A 64 . ? 1_555 ? 9 AC3 3 U A 56 ? U A 64 . ? 5_656 ? 10 AC4 4 G A 32 ? G A 40 . ? 1_555 ? 11 AC4 4 HOH I . ? HOH A 92 . ? 1_555 ? 12 AC4 4 HOH I . ? HOH A 93 . ? 1_555 ? 13 AC4 4 HOH I . ? HOH A 94 . ? 1_555 ? 14 AC5 2 A A 61 ? A A 69 . ? 1_555 ? 15 AC5 2 A A 83 ? A A 91 . ? 6_566 ? 16 AC6 4 U A 54 ? U A 62 . ? 1_555 ? 17 AC6 4 C A 55 ? C A 63 . ? 1_555 ? 18 AC6 4 C A 55 ? C A 63 . ? 5_656 ? 19 AC6 4 U A 56 ? U A 64 . ? 5_656 ? 20 AC7 12 G A 11 ? G A 19 . ? 1_555 ? 21 AC7 12 U A 12 ? U A 20 . ? 1_555 ? 22 AC7 12 G A 32 ? G A 40 . ? 1_555 ? 23 AC7 12 G A 34 ? G A 42 . ? 1_555 ? 24 AC7 12 A A 35 ? A A 43 . ? 1_555 ? 25 AC7 12 C A 49 ? C A 57 . ? 1_555 ? 26 AC7 12 G A 64 ? G A 72 . ? 1_555 ? 27 AC7 12 C A 69 ? C A 77 . ? 1_555 ? 28 AC7 12 G A 70 ? G A 78 . ? 1_555 ? 29 AC7 12 HOH I . ? HOH A 96 . ? 1_555 ? 30 AC7 12 MG B . ? MG A 98 . ? 1_555 ? 31 AC7 12 MG C . ? MG A 99 . ? 1_555 ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 C6 _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 A _pdbx_validate_rmsd_bond.auth_seq_id_1 85 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 N6 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 A _pdbx_validate_rmsd_bond.auth_seq_id_2 85 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.234 _pdbx_validate_rmsd_bond.bond_target_value 1.335 _pdbx_validate_rmsd_bond.bond_deviation -0.101 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.008 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C4'" A U 20 ? ? "C3'" A U 20 ? ? "O3'" A U 20 ? ? 125.80 113.00 12.80 2.00 N 2 1 "C4'" A U 20 ? ? "C3'" A U 20 ? ? "C2'" A U 20 ? ? 109.66 102.60 7.06 1.00 N 3 1 "C2'" A A 44 ? ? "C3'" A A 44 ? ? "O3'" A A 44 ? ? 127.00 113.70 13.30 1.60 N 4 1 "C2'" A G 78 ? ? "C3'" A G 78 ? ? "O3'" A G 78 ? ? 125.25 113.70 11.55 1.60 N 5 1 C6 A A 85 ? ? N1 A A 85 ? ? C2 A A 85 ? ? 125.08 118.60 6.48 0.60 N 6 1 N1 A A 85 ? ? C2 A A 85 ? ? N3 A A 85 ? ? 124.32 129.30 -4.98 0.50 N 7 1 C5 A A 85 ? ? C6 A A 85 ? ? N1 A A 85 ? ? 111.36 117.70 -6.34 0.50 N 8 1 C5 A A 85 ? ? C6 A A 85 ? ? N6 A A 85 ? ? 129.07 123.70 5.37 0.80 N # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A U 26 ? A U 18 2 1 Y 1 A C 27 ? A C 19 3 1 Y 1 A U 28 ? A U 20 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 CA CA CA N N 73 G OP3 O N N 74 G P P N N 75 G OP1 O N N 76 G OP2 O N N 77 G "O5'" O N N 78 G "C5'" C N N 79 G "C4'" C N R 80 G "O4'" O N N 81 G "C3'" C N S 82 G "O3'" O N N 83 G "C2'" C N R 84 G "O2'" O N N 85 G "C1'" C N R 86 G N9 N Y N 87 G C8 C Y N 88 G N7 N Y N 89 G C5 C Y N 90 G C6 C N N 91 G O6 O N N 92 G N1 N N N 93 G C2 C N N 94 G N2 N N N 95 G N3 N N N 96 G C4 C Y N 97 G HOP3 H N N 98 G HOP2 H N N 99 G "H5'" H N N 100 G "H5''" H N N 101 G "H4'" H N N 102 G "H3'" H N N 103 G "HO3'" H N N 104 G "H2'" H N N 105 G "HO2'" H N N 106 G "H1'" H N N 107 G H8 H N N 108 G H1 H N N 109 G H21 H N N 110 G H22 H N N 111 HOH O O N N 112 HOH H1 H N N 113 HOH H2 H N N 114 MG MG MG N N 115 TPS CM2 C N N 116 TPS N3 N Y N 117 TPS C2 C Y N 118 TPS S1 S Y N 119 TPS C5 C Y N 120 TPS C4 C Y N 121 TPS CM4 C N N 122 TPS C6 C N N 123 TPS C7 C N N 124 TPS O7 O N N 125 TPS N1A N Y N 126 TPS C2A C Y N 127 TPS N3A N Y N 128 TPS C4A C Y N 129 TPS N4A N N N 130 TPS C5A C Y N 131 TPS C6A C Y N 132 TPS C7A C N N 133 TPS P1 P N N 134 TPS O1 O N N 135 TPS O2 O N N 136 TPS O3 O N N 137 TPS HM21 H N N 138 TPS HM22 H N N 139 TPS HM23 H N N 140 TPS H2 H N N 141 TPS HM41 H N N 142 TPS HM42 H N N 143 TPS HM43 H N N 144 TPS H61 H N N 145 TPS H62 H N N 146 TPS H71 H N N 147 TPS H72 H N N 148 TPS H41N H N N 149 TPS H42N H N N 150 TPS H6A H N N 151 TPS H7A1 H N N 152 TPS H7A2 H N N 153 TPS HO2 H N N 154 TPS HO3 H N N 155 U OP3 O N N 156 U P P N N 157 U OP1 O N N 158 U OP2 O N N 159 U "O5'" O N N 160 U "C5'" C N N 161 U "C4'" C N R 162 U "O4'" O N N 163 U "C3'" C N S 164 U "O3'" O N N 165 U "C2'" C N R 166 U "O2'" O N N 167 U "C1'" C N R 168 U N1 N N N 169 U C2 C N N 170 U O2 O N N 171 U N3 N N N 172 U C4 C N N 173 U O4 O N N 174 U C5 C N N 175 U C6 C N N 176 U HOP3 H N N 177 U HOP2 H N N 178 U "H5'" H N N 179 U "H5''" H N N 180 U "H4'" H N N 181 U "H3'" H N N 182 U "HO3'" H N N 183 U "H2'" H N N 184 U "HO2'" H N N 185 U "H1'" H N N 186 U H3 H N N 187 U H5 H N N 188 U H6 H N N 189 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 TPS CM2 C2A sing N N 118 TPS CM2 HM21 sing N N 119 TPS CM2 HM22 sing N N 120 TPS CM2 HM23 sing N N 121 TPS N3 C2 doub Y N 122 TPS N3 C4 sing Y N 123 TPS N3 C7A sing N N 124 TPS C2 S1 sing Y N 125 TPS C2 H2 sing N N 126 TPS S1 C5 sing Y N 127 TPS C5 C4 doub Y N 128 TPS C5 C6 sing N N 129 TPS C4 CM4 sing N N 130 TPS CM4 HM41 sing N N 131 TPS CM4 HM42 sing N N 132 TPS CM4 HM43 sing N N 133 TPS C6 C7 sing N N 134 TPS C6 H61 sing N N 135 TPS C6 H62 sing N N 136 TPS C7 O7 sing N N 137 TPS C7 H71 sing N N 138 TPS C7 H72 sing N N 139 TPS O7 P1 sing N N 140 TPS N1A C2A doub Y N 141 TPS N1A C6A sing Y N 142 TPS C2A N3A sing Y N 143 TPS N3A C4A doub Y N 144 TPS C4A N4A sing N N 145 TPS C4A C5A sing Y N 146 TPS N4A H41N sing N N 147 TPS N4A H42N sing N N 148 TPS C5A C6A doub Y N 149 TPS C5A C7A sing N N 150 TPS C6A H6A sing N N 151 TPS C7A H7A1 sing N N 152 TPS C7A H7A2 sing N N 153 TPS P1 O1 doub N N 154 TPS P1 O2 sing N N 155 TPS P1 O3 sing N N 156 TPS O2 HO2 sing N N 157 TPS O3 HO3 sing N N 158 U OP3 P sing N N 159 U OP3 HOP3 sing N N 160 U P OP1 doub N N 161 U P OP2 sing N N 162 U P "O5'" sing N N 163 U OP2 HOP2 sing N N 164 U "O5'" "C5'" sing N N 165 U "C5'" "C4'" sing N N 166 U "C5'" "H5'" sing N N 167 U "C5'" "H5''" sing N N 168 U "C4'" "O4'" sing N N 169 U "C4'" "C3'" sing N N 170 U "C4'" "H4'" sing N N 171 U "O4'" "C1'" sing N N 172 U "C3'" "O3'" sing N N 173 U "C3'" "C2'" sing N N 174 U "C3'" "H3'" sing N N 175 U "O3'" "HO3'" sing N N 176 U "C2'" "O2'" sing N N 177 U "C2'" "C1'" sing N N 178 U "C2'" "H2'" sing N N 179 U "O2'" "HO2'" sing N N 180 U "C1'" N1 sing N N 181 U "C1'" "H1'" sing N N 182 U N1 C2 sing N N 183 U N1 C6 sing N N 184 U C2 O2 doub N N 185 U C2 N3 sing N N 186 U N3 C4 sing N N 187 U N3 H3 sing N N 188 U C4 O4 doub N N 189 U C4 C5 sing N N 190 U C5 C6 doub N N 191 U C5 H5 sing N N 192 U C6 H6 sing N N 193 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2HOM 'double helix' 2HOM 'a-form double helix' 2HOM 'hairpin loop' 2HOM 'bulge loop' 2HOM 'mismatched base pair' 2HOM 'internal loop' 2HOM 'triple helix' 2HOM 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 82 1_555 -0.099 -0.102 0.110 -0.153 -16.176 2.182 1 A_G9:C90_A A 9 ? A 90 ? 19 1 1 A C 2 1_555 A G 81 1_555 -0.346 -0.209 -0.166 5.147 -12.765 0.264 2 A_C10:G89_A A 10 ? A 89 ? 19 1 1 A G 3 1_555 A C 80 1_555 -0.115 0.012 -0.079 -6.309 -14.439 4.439 3 A_G11:C88_A A 11 ? A 88 ? 19 1 1 A A 4 1_555 A U 79 1_555 0.319 -0.106 0.181 -1.873 -17.391 3.957 4 A_A12:U87_A A 12 ? A 87 ? 20 1 1 A C 5 1_555 A G 78 1_555 0.346 -0.164 0.150 0.728 -22.030 -3.366 5 A_C13:G86_A A 13 ? A 86 ? 19 1 1 A U 6 1_555 A A 77 1_555 -1.126 -0.007 -0.201 -6.865 -11.047 -0.188 6 A_U14:A85_A A 14 ? A 85 ? 20 1 1 A C 7 1_555 A G 43 1_555 -0.205 -0.084 0.238 -0.778 -13.060 3.275 7 A_C15:G51_A A 15 ? A 51 ? 19 1 1 A G 8 1_555 A C 42 1_555 0.153 -0.090 0.123 -3.235 -14.142 5.181 8 A_G16:C50_A A 16 ? A 50 ? 19 1 1 A G 9 1_555 A C 41 1_555 -0.379 -0.208 0.547 -10.077 -8.276 3.321 9 A_G17:C49_A A 17 ? A 49 ? 19 1 1 A G 10 1_555 A C 40 1_555 -0.145 -0.009 -0.078 -12.831 -22.799 1.778 10 A_G18:C48_A A 18 ? A 48 ? 19 1 1 A G 11 1_555 A A 39 1_555 -0.170 1.447 -0.354 -0.251 -9.039 -18.348 11 A_G19:A47_A A 19 ? A 47 ? 8 ? 1 A U 12 1_555 A A 37 1_555 0.326 -0.145 -0.471 25.511 12.613 0.704 12 A_U20:A45_A A 20 ? A 45 ? 20 1 1 A A 27 1_555 A C 16 1_555 -4.266 -0.805 -0.610 -3.711 -3.130 -0.678 13 A_A35:C24_A A 35 ? A 24 ? ? 1 1 A G 28 1_555 A C 15 1_555 -0.675 -0.230 -0.141 -0.615 -7.245 0.312 14 A_G36:C23_A A 36 ? A 23 ? 19 1 1 A G 29 1_555 A C 14 1_555 -0.206 -0.034 0.052 -5.952 -6.353 1.141 15 A_G37:C22_A A 37 ? A 22 ? 19 1 1 A C 30 1_555 A G 13 1_555 0.333 -0.093 0.977 -17.175 3.412 -2.890 16 A_C38:G21_A A 38 ? A 21 ? 19 1 1 A U 31 1_555 A A 35 1_555 4.274 -2.189 0.901 6.464 15.141 -92.834 17 A_U39:A43_A A 39 ? A 43 ? 24 4 1 A A 45 1_555 A A 76 1_555 6.373 -4.813 0.659 -9.051 26.135 161.636 18 A_A53:A84_A A 53 ? A 84 ? 2 8 1 A A 48 1_555 A G 75 1_555 -6.727 -4.731 0.786 11.495 -17.354 -13.440 19 A_A56:G83_A A 56 ? A 83 ? 11 10 1 A C 49 1_555 A G 74 1_555 1.322 -0.266 -0.404 10.856 -20.216 -0.291 20 A_C57:G82_A A 57 ? A 82 ? 19 1 1 A C 50 1_555 A G 73 1_555 0.789 -0.643 -0.156 -1.160 -13.317 -5.927 21 A_C58:G81_A A 58 ? A 81 ? 19 1 1 A U 51 1_555 A A 72 1_555 -0.003 0.046 0.183 -22.632 -13.440 1.796 22 A_U59:A80_A A 59 ? A 80 ? 20 1 1 A G 52 1_555 A G 70 1_555 1.128 3.207 0.255 -3.484 3.909 -94.083 23 A_G60:G78_A A 60 ? A 78 ? 6 ? 1 A A 53 1_555 A C 69 1_555 -1.625 3.671 0.327 -0.463 -7.569 108.265 24 A_A61:C77_A A 61 ? A 77 ? ? ? 1 A C 55 1_555 A G 68 1_555 0.393 -0.175 0.148 13.283 -23.641 4.455 25 A_C63:G76_A A 63 ? A 76 ? 19 1 1 A U 56 1_555 A A 67 1_555 0.232 0.094 0.329 15.751 -9.074 1.089 26 A_U64:A75_A A 64 ? A 75 ? 20 1 1 A G 57 1_555 A C 66 1_555 0.120 -0.044 -0.350 -3.187 -2.047 -1.022 27 A_G65:C74_A A 65 ? A 74 ? 19 1 1 A G 58 1_555 A C 65 1_555 -0.490 -0.315 0.183 1.022 -7.136 3.777 28 A_G66:C73_A A 66 ? A 73 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 82 1_555 A C 2 1_555 A G 81 1_555 0.099 -1.054 3.150 2.702 1.670 33.299 -2.096 0.254 3.094 2.907 -4.702 33.446 1 AA_G9C10:G89C90_AA A 9 ? A 90 ? A 10 ? A 89 ? 1 A C 2 1_555 A G 81 1_555 A G 3 1_555 A C 80 1_555 0.563 -1.718 3.467 0.808 12.090 30.906 -4.981 -0.856 2.641 21.671 -1.448 33.143 2 AA_C10G11:C88G89_AA A 10 ? A 89 ? A 11 ? A 88 ? 1 A G 3 1_555 A C 80 1_555 A A 4 1_555 A U 79 1_555 -0.062 -1.160 3.106 -2.157 0.585 32.706 -2.151 -0.242 3.083 1.037 3.826 32.780 3 AA_G11A12:U87C88_AA A 11 ? A 88 ? A 12 ? A 87 ? 1 A A 4 1_555 A U 79 1_555 A C 5 1_555 A G 78 1_555 -0.502 -1.382 3.124 -0.152 5.096 34.330 -3.040 0.820 2.897 8.574 0.256 34.695 4 AA_A12C13:G86U87_AA A 12 ? A 87 ? A 13 ? A 86 ? 1 A C 5 1_555 A G 78 1_555 A U 6 1_555 A A 77 1_555 0.295 -1.194 3.274 3.523 8.802 26.589 -4.404 0.176 2.760 18.410 -7.369 28.200 5 AA_C13U14:A85G86_AA A 13 ? A 86 ? A 14 ? A 85 ? 1 A U 6 1_555 A A 77 1_555 A C 7 1_555 A G 43 1_555 1.555 -0.355 3.150 -1.354 3.354 44.844 -0.751 -2.148 3.071 4.388 1.772 44.982 6 AA_U14C15:G51A85_AA A 14 ? A 85 ? A 15 ? A 51 ? 1 A C 7 1_555 A G 43 1_555 A G 8 1_555 A C 42 1_555 0.716 -1.874 3.178 -0.510 9.599 31.995 -4.681 -1.321 2.514 16.943 0.900 33.371 7 AA_C15G16:C50G51_AA A 15 ? A 51 ? A 16 ? A 50 ? 1 A G 8 1_555 A C 42 1_555 A G 9 1_555 A C 41 1_555 -0.575 -1.821 3.317 -2.982 0.233 33.641 -3.172 0.497 3.342 0.401 5.140 33.770 8 AA_G16G17:C49C50_AA A 16 ? A 50 ? A 17 ? A 49 ? 1 A G 9 1_555 A C 41 1_555 A G 10 1_555 A C 40 1_555 0.111 -1.790 3.245 9.114 9.343 31.729 -4.400 1.139 2.566 16.254 -15.856 34.245 9 AA_G17G18:C48C49_AA A 17 ? A 49 ? A 18 ? A 48 ? 1 A G 10 1_555 A C 40 1_555 A G 11 1_555 A A 39 1_555 -1.069 -0.644 2.875 3.599 7.055 32.530 -2.099 2.358 2.554 12.367 -6.309 33.455 10 AA_G18G19:A47C48_AA A 18 ? A 48 ? A 19 ? A 47 ? 1 A G 11 1_555 A A 39 1_555 A U 12 1_555 A A 37 1_555 0.084 0.875 2.799 3.007 7.628 13.178 -2.271 1.864 2.825 29.764 -11.731 15.511 11 AA_G19U20:A45A47_AA A 19 ? A 47 ? A 20 ? A 45 ? 1 A A 27 1_555 A C 16 1_555 A G 28 1_555 A C 15 1_555 0.425 -0.857 3.278 -9.592 8.896 43.740 -1.862 -1.364 2.909 11.634 12.545 45.563 12 AA_A35G36:C23C24_AA A 35 ? A 24 ? A 36 ? A 23 ? 1 A G 28 1_555 A C 15 1_555 A G 29 1_555 A C 14 1_555 -0.487 -1.812 3.233 -5.942 8.328 36.809 -3.763 0.038 2.815 12.886 9.195 38.157 13 AA_G36G37:C22C23_AA A 36 ? A 23 ? A 37 ? A 22 ? 1 A G 29 1_555 A C 14 1_555 A C 30 1_555 A G 13 1_555 -0.210 -2.230 3.531 -3.216 8.326 38.078 -4.349 -0.079 3.004 12.552 4.849 39.072 14 AA_G37C38:G21C22_AA A 37 ? A 22 ? A 38 ? A 21 ? 1 A C 30 1_555 A G 13 1_555 A U 31 1_555 A A 35 1_555 -3.144 -1.114 2.632 12.562 3.459 67.799 -1.076 3.113 2.041 3.072 -11.156 68.893 15 AA_C38U39:A43G21_AA A 38 ? A 21 ? A 39 ? A 43 ? 1 A A 45 1_555 A A 76 1_555 A A 48 1_555 A G 75 1_555 -2.604 -1.778 0.692 145.959 -87.662 -40.481 1.282 -0.657 1.475 45.469 75.707 -170.864 16 AA_A53A56:G83A84_AA A 53 ? A 84 ? A 56 ? A 83 ? 1 A A 48 1_555 A G 75 1_555 A C 49 1_555 A G 74 1_555 1.174 -0.701 3.414 3.178 15.001 74.053 -1.043 -0.860 3.285 12.328 -2.612 75.401 17 AA_A56C57:G82G83_AA A 56 ? A 83 ? A 57 ? A 82 ? 1 A C 49 1_555 A G 74 1_555 A C 50 1_555 A G 73 1_555 -1.140 -1.908 3.660 -3.150 7.982 25.243 -6.342 1.606 3.042 17.627 6.956 26.639 18 AA_C57C58:G81G82_AA A 57 ? A 82 ? A 58 ? A 81 ? 1 A C 50 1_555 A G 73 1_555 A U 51 1_555 A A 72 1_555 0.575 -1.059 3.716 -0.651 18.275 37.341 -3.586 -0.888 2.903 26.674 0.950 41.434 19 AA_C58U59:A80G81_AA A 58 ? A 81 ? A 59 ? A 80 ? 1 A U 51 1_555 A A 72 1_555 A G 52 1_555 A G 70 1_555 2.486 -1.961 2.649 5.351 -1.280 90.370 -1.359 -1.661 2.783 -0.901 -3.769 90.501 20 AA_U59G60:G78A80_AA A 59 ? A 80 ? A 60 ? A 78 ? 1 A G 52 1_555 A G 70 1_555 A A 53 1_555 A C 69 1_555 2.593 1.660 0.315 21.397 -163.908 -150.183 -0.769 1.305 0.639 82.197 10.730 -176.228 21 AA_G60A61:C77G78_AA A 60 ? A 78 ? A 61 ? A 77 ? 1 A A 53 1_555 A C 69 1_555 A C 55 1_555 A G 68 1_555 -3.127 -1.061 -1.767 97.571 -143.587 55.721 -1.371 0.994 -1.605 -73.202 -49.743 174.343 22 AA_A61C63:G76C77_AA A 61 ? A 77 ? A 63 ? A 76 ? 1 A C 55 1_555 A G 68 1_555 A U 56 1_555 A A 67 1_555 -0.085 -1.691 3.220 -6.734 0.652 31.492 -3.163 -1.027 3.136 1.185 12.230 32.192 23 AA_C63U64:A75G76_AA A 63 ? A 76 ? A 64 ? A 75 ? 1 A U 56 1_555 A A 67 1_555 A G 57 1_555 A C 66 1_555 -0.663 -1.486 3.343 4.522 21.479 33.407 -4.400 1.441 1.971 33.278 -7.007 39.800 24 AA_U64G65:C74A75_AA A 64 ? A 75 ? A 65 ? A 74 ? 1 A G 57 1_555 A C 66 1_555 A G 58 1_555 A C 65 1_555 0.841 -2.209 3.043 -0.868 3.259 30.507 -4.745 -1.740 2.774 6.169 1.643 30.688 25 AA_G65G66:C73C74_AA A 65 ? A 74 ? A 66 ? A 73 ? # _atom_sites.entry_id 2HOM _atom_sites.fract_transf_matrix[1][1] 0.015221 _atom_sites.fract_transf_matrix[1][2] 0.008788 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017575 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009833 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA MG N O P S # loop_