HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 18-JUL-06 2HQ4 TITLE CRYSTAL STRUCTURE OF ORF 1580 A HYPOTHETICAL PROTEIN FROM PYROCOCCUS TITLE 2 HORIKOSHII COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN PH1570; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 53953; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SINGLETON PROTEIN, PH1580, STRUCTURAL GENOMICS, PSI SOUTHEAST KEYWDS 2 COLLABORATORY FOR STRUCTURAL GENOMICS, SECSG, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.LI,M.MARSHALL,J.CHANG,M.ZHAO,M.ZHANG,H.XU,Z.J.LIU,J.P.ROSE, AUTHOR 2 B.C.WANG,SOUTHEAST COLLABORATORY FOR STRUCTURAL GENOMICS,SOUTHEAST AUTHOR 3 COLLABORATORY FOR STRUCTURAL GENOMICS (SECSG) REVDAT 5 30-OCT-24 2HQ4 1 REMARK REVDAT 4 06-MAR-24 2HQ4 1 REMARK SEQADV REVDAT 3 13-SEP-17 2HQ4 1 REMARK REVDAT 2 24-FEB-09 2HQ4 1 VERSN REVDAT 1 19-SEP-06 2HQ4 0 JRNL AUTH Y.LI,M.MARSHALL,J.CHANG,M.ZHAO,M.ZHANG,H.XU,Z.J.LIU, JRNL AUTH 2 J.P.ROSE,B.C.WANG, JRNL AUTH 3 SOUTHEAST COLLABORATORY FOR STRUCTURAL GENOMICS JRNL TITL CRYSTAL STRUCTURE OF ORF 1580 A HYPOTHETICAL PROTEIN FROM JRNL TITL 2 PYROCOCCUS HORIKOSHII JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 28017 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1491 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.04 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1825 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE SET COUNT : 106 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2689 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 214 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.30000 REMARK 3 B22 (A**2) : 0.63000 REMARK 3 B33 (A**2) : -0.92000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.44000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.166 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.151 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.098 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.356 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2756 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3700 ; 1.699 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 313 ; 8.583 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 139 ;36.031 ;25.108 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 534 ;15.744 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;25.648 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 373 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2070 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1206 ; 0.237 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1858 ; 0.317 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 182 ; 0.237 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 55 ; 0.258 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.166 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1650 ; 1.279 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2542 ; 1.919 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1327 ; 2.891 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1158 ; 4.298 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A -8 A 152 4 REMARK 3 1 B -8 B 152 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1328 ; 0.62 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1328 ; 1.25 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2HQ4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1000038628. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI CHANNEL 220 REMARK 200 OPTICS : ROSENBAUM REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28050 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 70.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07500 REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.29300 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SCA2STRUCTURE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROP VAPOR DIFFUSION USING 1 REMARK 280 MICROLITER DROPS CONTAINING EQUAL VOLUMES OF PROTEIN CONCENTRATE REMARK 280 (12 MG/ML) AND RESERVOIR SOLUTION CONTAINING 0.2M AMMONIUM REMARK 280 DIHYDROGEN PHOSPHATE, 20% W/V PEG 3350, PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 66.93450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.19600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 66.93450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.19600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 73 REMARK 465 GLU A 74 REMARK 465 PHE A 75 REMARK 465 GLU B 73 REMARK 465 GLU B 74 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 48 O HOH A 174 1.84 REMARK 500 CG MET A 1 O HOH A 249 1.94 REMARK 500 NE1 TRP B 150 O HOH B 259 2.03 REMARK 500 N ASP A -8 O HOH A 253 2.10 REMARK 500 O HOH A 236 O HOH A 246 2.19 REMARK 500 OE2 GLU A 8 O HOH A 244 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 59 C PHE B 60 N -0.191 REMARK 500 PHE B 60 C TRP B 61 N -0.182 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 49 N - CA - C ANGL. DEV. = 19.1 DEGREES REMARK 500 TYR A 50 N - CA - C ANGL. DEV. = -16.2 DEGREES REMARK 500 MET B 1 CG - SD - CE ANGL. DEV. = -11.8 DEGREES REMARK 500 TRP B 152 N - CA - C ANGL. DEV. = -20.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 49 -71.10 -49.05 REMARK 500 LEU A 65 118.93 -160.87 REMARK 500 LEU A 77 160.43 71.67 REMARK 500 LYS A 99 63.58 61.45 REMARK 500 TYR B 46 -123.86 -121.16 REMARK 500 TYR B 50 118.69 -171.31 REMARK 500 LYS B 99 65.09 65.84 REMARK 500 LYS B 151 -170.92 92.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 76 LEU A 77 139.71 REMARK 500 LEU A 77 LYS A 78 -141.49 REMARK 500 ASP B -8 LEU B -7 -149.00 REMARK 500 TRP B 150 LYS B 151 -143.59 REMARK 500 LYS B 151 TRP B 152 81.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: PH1570 RELATED DB: TARGETDB DBREF 2HQ4 A 1 152 UNP O59278 O59278_PYRHO 1 152 DBREF 2HQ4 B 1 152 UNP O59278 O59278_PYRHO 1 152 SEQADV 2HQ4 ASP A -8 UNP O59278 CLONING ARTIFACT SEQADV 2HQ4 LEU A -7 UNP O59278 CLONING ARTIFACT SEQADV 2HQ4 TYR A -6 UNP O59278 CLONING ARTIFACT SEQADV 2HQ4 PHE A -5 UNP O59278 CLONING ARTIFACT SEQADV 2HQ4 GLN A -4 UNP O59278 CLONING ARTIFACT SEQADV 2HQ4 GLY A -3 UNP O59278 CLONING ARTIFACT SEQADV 2HQ4 GLY A -2 UNP O59278 CLONING ARTIFACT SEQADV 2HQ4 SER A -1 UNP O59278 CLONING ARTIFACT SEQADV 2HQ4 GLY A 0 UNP O59278 CLONING ARTIFACT SEQADV 2HQ4 ASP B -8 UNP O59278 CLONING ARTIFACT SEQADV 2HQ4 LEU B -7 UNP O59278 CLONING ARTIFACT SEQADV 2HQ4 TYR B -6 UNP O59278 CLONING ARTIFACT SEQADV 2HQ4 PHE B -5 UNP O59278 CLONING ARTIFACT SEQADV 2HQ4 GLN B -4 UNP O59278 CLONING ARTIFACT SEQADV 2HQ4 GLY B -3 UNP O59278 CLONING ARTIFACT SEQADV 2HQ4 GLY B -2 UNP O59278 CLONING ARTIFACT SEQADV 2HQ4 SER B -1 UNP O59278 CLONING ARTIFACT SEQADV 2HQ4 GLY B 0 UNP O59278 CLONING ARTIFACT SEQRES 1 A 161 ASP LEU TYR PHE GLN GLY GLY SER GLY MET GLN CYS GLU SEQRES 2 A 161 GLU LYS LEU GLU VAL PHE GLU ASN GLY PHE LYS ASP GLU SEQRES 3 A 161 LYS PHE ASN VAL GLU VAL LYS PHE TYR GLY ASN ASP ALA SEQRES 4 A 161 ARG LYS VAL LEU LEU ALA MET ILE TYR GLU LEU TYR LEU SEQRES 5 A 161 PRO GLU TYR GLY ARG GLU TYR VAL TYR PRO PHE GLU CYS SEQRES 6 A 161 ALA LYS GLU PHE TRP ASN ILE TYR LEU GLU GLY GLU GLU SEQRES 7 A 161 ILE GLN ASP GLU GLU PHE GLN LEU LYS PRO ILE LYS PHE SEQRES 8 A 161 THR SER GLU GLN VAL ILE LYS LYS LEU GLN GLU GLU ILE SEQRES 9 A 161 LYS LYS ILE LYS PRO PRO LEU GLU ILE LYS ILE GLU GLU SEQRES 10 A 161 ALA LYS ILE TYR LYS THR LYS GLU GLY TYR LEU ALA VAL SEQRES 11 A 161 GLY ASN TYR PHE ILE LEU ASP PRO ARG GLY ARG LEU PHE SEQRES 12 A 161 ILE PHE ASN LYS PRO SER ILE ALA ASN LYS ILE LEU LYS SEQRES 13 A 161 TYR ILE TRP LYS TRP SEQRES 1 B 161 ASP LEU TYR PHE GLN GLY GLY SER GLY MET GLN CYS GLU SEQRES 2 B 161 GLU LYS LEU GLU VAL PHE GLU ASN GLY PHE LYS ASP GLU SEQRES 3 B 161 LYS PHE ASN VAL GLU VAL LYS PHE TYR GLY ASN ASP ALA SEQRES 4 B 161 ARG LYS VAL LEU LEU ALA MET ILE TYR GLU LEU TYR LEU SEQRES 5 B 161 PRO GLU TYR GLY ARG GLU TYR VAL TYR PRO PHE GLU CYS SEQRES 6 B 161 ALA LYS GLU PHE TRP ASN ILE TYR LEU GLU GLY GLU GLU SEQRES 7 B 161 ILE GLN ASP GLU GLU PHE GLN LEU LYS PRO ILE LYS PHE SEQRES 8 B 161 THR SER GLU GLN VAL ILE LYS LYS LEU GLN GLU GLU ILE SEQRES 9 B 161 LYS LYS ILE LYS PRO PRO LEU GLU ILE LYS ILE GLU GLU SEQRES 10 B 161 ALA LYS ILE TYR LYS THR LYS GLU GLY TYR LEU ALA VAL SEQRES 11 B 161 GLY ASN TYR PHE ILE LEU ASP PRO ARG GLY ARG LEU PHE SEQRES 12 B 161 ILE PHE ASN LYS PRO SER ILE ALA ASN LYS ILE LEU LYS SEQRES 13 B 161 TYR ILE TRP LYS TRP FORMUL 3 HOH *214(H2 O) HELIX 1 1 GLN A -4 GLY A 0 5 5 HELIX 2 2 ALA A 30 GLY A 47 1 18 HELIX 3 3 VAL A 51 ASN A 62 1 12 HELIX 4 4 GLU A 66 ILE A 70 5 5 HELIX 5 5 SER A 84 LYS A 99 1 16 HELIX 6 6 LYS A 105 ALA A 109 5 5 HELIX 7 7 SER A 140 LYS A 147 1 8 HELIX 8 8 ALA B 30 LEU B 43 1 14 HELIX 9 9 PRO B 44 TYR B 46 5 3 HELIX 10 10 VAL B 51 ASN B 62 1 12 HELIX 11 11 GLU B 66 ILE B 70 5 5 HELIX 12 12 SER B 84 LYS B 99 1 16 HELIX 13 13 LYS B 105 ALA B 109 5 5 HELIX 14 14 SER B 140 LYS B 147 1 8 SHEET 1 A 9 MET A 1 GLU A 4 0 SHEET 2 A 9 LEU A 7 PHE A 10 -1 O LEU A 7 N CYS A 3 SHEET 3 A 9 GLY A 13 ASP A 16 -1 O GLY A 13 N PHE A 10 SHEET 4 A 9 VAL A 21 GLY A 27 -1 O VAL A 21 N ASP A 16 SHEET 5 A 9 ARG A 132 PHE A 136 -1 O ILE A 135 N LYS A 24 SHEET 6 A 9 PHE A 125 LEU A 127 -1 N ILE A 126 O PHE A 134 SHEET 7 A 9 GLY A 117 VAL A 121 -1 N ALA A 120 O LEU A 127 SHEET 8 A 9 LYS A 110 THR A 114 -1 N LYS A 110 O VAL A 121 SHEET 9 A 9 LYS A 78 PRO A 79 -1 N LYS A 78 O LYS A 113 SHEET 1 B 8 GLY B 0 GLU B 4 0 SHEET 2 B 8 LEU B 7 PHE B 10 -1 O VAL B 9 N MET B 1 SHEET 3 B 8 GLY B 13 ASP B 16 -1 O GLY B 13 N PHE B 10 SHEET 4 B 8 VAL B 21 GLY B 27 -1 O VAL B 21 N ASP B 16 SHEET 5 B 8 ARG B 132 PHE B 136 -1 O ILE B 135 N LYS B 24 SHEET 6 B 8 PHE B 125 LEU B 127 -1 N ILE B 126 O PHE B 134 SHEET 7 B 8 GLY B 117 VAL B 121 -1 N ALA B 120 O LEU B 127 SHEET 8 B 8 LYS B 110 THR B 114 -1 N LYS B 110 O VAL B 121 SSBOND 1 CYS A 3 CYS A 56 1555 1555 2.16 SSBOND 2 CYS B 3 CYS B 56 1555 1555 2.71 CISPEP 1 GLY B -3 GLY B -2 0 -3.78 CRYST1 133.869 46.392 94.750 90.00 132.42 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007470 0.000000 0.006825 0.00000 SCALE2 0.000000 0.021555 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014296 0.00000