HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 18-JUL-06 2HQ8 TITLE CRYSTAL STRUCTURE OF COELENTERAZINE-BINDING PROTEIN FROM RENILLA TITLE 2 MUELLERI IN THE CA LOADED APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: COELENTERAZINE-BINDING PROTEIN CA-BOUND APO FORM; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RENILLA MUELLERI; SOURCE 3 ORGANISM_TAXID: 37510; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: BACTERIAL KEYWDS COELENTERAZINE-BINDING PROTEIN, RENILLA MUELLERI, PSI, STRUCTURAL KEYWDS 2 GENOMICS, SOUTHEAST COLLABORATORY FOR STRUCTURAL GENOMICS, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, SECSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR G.STEPANYUK,Z.J.LIU,E.S.VYSOTSKI,J.LEE,J.P.ROSE,B.C.WANG,SOUTHEAST AUTHOR 2 COLLABORATORY FOR STRUCTURAL GENOMICS (SECSG) REVDAT 4 14-FEB-24 2HQ8 1 REMARK LINK REVDAT 3 24-FEB-09 2HQ8 1 VERSN REVDAT 2 08-JUL-08 2HQ8 1 JRNL REVDAT 1 12-SEP-06 2HQ8 0 JRNL AUTH G.A.STEPANYUK,Z.J.LIU,S.S.MARKOVA,L.A.FRANK,J.LEE, JRNL AUTH 2 E.S.VYSOTSKI,B.C.WANG JRNL TITL CRYSTAL STRUCTURE OF COELENTERAZINE-BINDING PROTEIN FROM JRNL TITL 2 RENILLA MUELLERI AT 1.7 A: WHY IT IS NOT A CALCIUM-REGULATED JRNL TITL 3 PHOTOPROTEIN. JRNL REF PHOTOCHEM.PHOTOBIOL.SCI. V. 7 442 2008 JRNL REFN JRNL PMID 18385886 JRNL DOI 10.1039/B716535H REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 37300 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 2079 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2175 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.2990 REMARK 3 BIN FREE R VALUE SET COUNT : 126 REMARK 3 BIN FREE R VALUE : 0.4310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2784 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 300 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.48000 REMARK 3 B22 (A**2) : 0.48000 REMARK 3 B33 (A**2) : -0.72000 REMARK 3 B12 (A**2) : 0.24000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.133 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.131 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.088 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.782 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2836 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3830 ; 1.459 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 361 ; 8.563 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 134 ;32.311 ;24.776 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 498 ;14.348 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;19.456 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 448 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2123 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1509 ; 0.228 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2053 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 231 ; 0.159 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 19 ; 0.118 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 39 ; 0.190 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.079 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1848 ; 0.988 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2885 ; 1.572 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1094 ; 2.832 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 945 ; 4.258 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2HQ8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-AUG-06. REMARK 100 THE DEPOSITION ID IS D_1000038632. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : SI CHANNEL 220 REMARK 200 OPTICS : ROSENBAUM REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37300 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 10.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04200 REMARK 200 FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.32000 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: S,CA-SAS REMARK 200 SOFTWARE USED: SCA2STRUCTURE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SITTING DROP VAPOR DIFFUSION USING 0.5 REMARK 280 MICROLITER DROPS CONTAINING EQUAL VOLUMES OF PROTEIN CONCENTRATE REMARK 280 (13.5 MG/ML) AND RESERVOIR SOLUTION CONTAING 2% PEG 4000, 2.0M REMARK 280 AMMONIUM SULFATE, 0.1M HEPES PH 7.5, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 291K, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.33400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.66700 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 62.50050 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 20.83350 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 104.16750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 GLU A 3 REMARK 465 VAL A 185 REMARK 465 ASP A 186 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 GLU B 3 REMARK 465 ASP B 186 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 6 CD OE1 OE2 REMARK 470 LYS A 45 CD CE NZ REMARK 470 LYS A 48 CG CD CE NZ REMARK 470 GLU A 52 CD OE1 OE2 REMARK 470 LYS A 53 CG CD CE NZ REMARK 470 GLU A 56 CG CD OE1 OE2 REMARK 470 LYS A 91 CD CE NZ REMARK 470 GLN A 103 CD OE1 NE2 REMARK 470 LEU A 105 CD1 CD2 REMARK 470 LYS A 139 CE NZ REMARK 470 GLU B 6 CG CD OE1 OE2 REMARK 470 ARG B 14 C O NH1 NH2 REMARK 470 LYS B 17 CE NZ REMARK 470 LYS B 45 CG CD CE NZ REMARK 470 ILE B 46 CD1 REMARK 470 LYS B 48 CE NZ REMARK 470 GLU B 52 CG CD OE1 OE2 REMARK 470 LYS B 53 CD CE NZ REMARK 470 ARG B 63 NE CZ NH1 NH2 REMARK 470 LYS B 91 CD CE NZ REMARK 470 GLU B 95 OE1 REMARK 470 LYS B 139 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 944 O HOH B 946 1.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG B 14 NE ARG B 14 CZ 0.208 REMARK 500 ARG B 14 NE ARG B 14 CZ 0.191 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 14 CD - NE - CZ ANGL. DEV. = -9.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 183 98.99 120.03 REMARK 500 THR B 5 124.26 65.60 REMARK 500 SER B 50 157.97 -46.68 REMARK 500 ALA B 81 -67.85 -6.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 181 GLY A 182 -30.86 REMARK 500 GLU B 80 ALA B 81 132.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 24 OD1 REMARK 620 2 THR A 26 OG1 89.3 REMARK 620 3 ASP A 28 OD1 80.9 77.9 REMARK 620 4 PHE A 30 O 83.6 158.8 81.3 REMARK 620 5 ASP A 35 OD1 87.1 79.6 154.6 119.7 REMARK 620 6 ASP A 35 OD2 116.0 122.1 151.9 78.8 53.1 REMARK 620 7 HOH A 439 O 158.5 88.2 77.6 91.1 113.4 83.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 112 OD1 REMARK 620 2 ASP A 114 OD1 85.5 REMARK 620 3 ASP A 116 OD1 88.2 78.9 REMARK 620 4 TYR A 118 O 84.1 155.3 78.4 REMARK 620 5 GLU A 123 OE2 89.1 70.8 149.7 131.2 REMARK 620 6 GLU A 123 OE1 106.0 122.4 154.5 82.1 53.7 REMARK 620 7 HOH A 639 O 165.4 82.5 81.4 103.6 94.7 87.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 148 OD1 REMARK 620 2 ASN A 150 OD1 84.9 REMARK 620 3 ASN A 152 OD1 85.2 78.1 REMARK 620 4 GLN A 154 O 83.4 155.6 79.6 REMARK 620 5 GLU A 159 OE1 104.1 124.9 155.3 78.8 REMARK 620 6 GLU A 159 OE2 97.3 73.9 151.5 128.8 51.2 REMARK 620 7 HOH A 466 O 170.7 91.7 85.7 96.5 84.9 90.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 24 OD1 REMARK 620 2 THR B 26 OG1 88.5 REMARK 620 3 ASP B 28 OD1 83.7 77.7 REMARK 620 4 PHE B 30 O 84.7 159.5 82.3 REMARK 620 5 ASP B 35 OD1 115.9 119.6 152.5 80.7 REMARK 620 6 ASP B 35 OD2 86.5 78.2 154.2 120.5 51.9 REMARK 620 7 HOH B 449 O 160.8 84.8 77.4 95.3 82.9 109.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 112 OD1 REMARK 620 2 ASP B 114 OD1 81.0 REMARK 620 3 ASP B 116 OD2 86.6 75.2 REMARK 620 4 TYR B 118 O 86.4 152.9 80.2 REMARK 620 5 GLU B 123 OE1 91.9 73.2 148.2 131.5 REMARK 620 6 GLU B 123 OE2 105.3 124.6 157.8 81.9 51.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 148 OD2 REMARK 620 2 ASN B 150 OD1 85.9 REMARK 620 3 ASN B 152 OD1 87.6 75.0 REMARK 620 4 GLN B 154 O 86.4 153.3 79.2 REMARK 620 5 GLU B 159 OE1 106.5 127.3 153.4 79.3 REMARK 620 6 GLU B 159 OE2 100.5 76.0 149.1 130.6 51.7 REMARK 620 7 HOH B 616 O 171.9 90.6 84.4 93.6 81.4 85.7 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CBP RELATED DB: TARGETDB REMARK 900 RELATED ID: 2HPS RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 A SUITABLE DATABASE REFERENCE WAS NOT AVAILABLE AT REMARK 999 THE TIME OF PROCESSING DBREF 2HQ8 A 2 184 UNP P05938 LBP_RENRE 1 183 DBREF 2HQ8 B 2 184 UNP P05938 LBP_RENRE 1 183 SEQRES 1 A 186 MET PRO GLU ILE THR GLU SER GLU ARG ALA TYR HIS LEU SEQRES 2 A 186 ARG LYS MET LYS THR ARG MET GLN ARG VAL ASP VAL THR SEQRES 3 A 186 GLY ASP GLY PHE ILE SER ARG GLU ASP TYR GLU LEU ILE SEQRES 4 A 186 ALA VAL ARG ILE ALA LYS ILE ALA LYS LEU SER ALA GLU SEQRES 5 A 186 LYS ALA GLU GLU THR ARG GLN GLU PHE LEU ARG VAL ALA SEQRES 6 A 186 ASP GLN LEU GLY LEU ALA PRO GLY VAL ARG ILE SER VAL SEQRES 7 A 186 GLU GLU ALA ALA VAL ASN ALA THR ASP SER LEU LEU LYS SEQRES 8 A 186 MET LYS GLY GLU GLU LYS ALA MET ALA VAL ILE GLN SER SEQRES 9 A 186 LEU ILE MET TYR ASP CYS ILE ASP THR ASP LYS ASP GLY SEQRES 10 A 186 TYR VAL SER LEU PRO GLU PHE LYS ALA PHE LEU GLN ALA SEQRES 11 A 186 VAL GLY PRO ASP LEU THR ASP ASP LYS ALA ILE THR CYS SEQRES 12 A 186 PHE ASN THR LEU ASP PHE ASN LYS ASN GLY GLN ILE SER SEQRES 13 A 186 ARG ASP GLU PHE LEU VAL THR VAL ASN ASP PHE LEU PHE SEQRES 14 A 186 GLY LEU GLU GLU THR ALA LEU ALA ASN ALA PHE TYR GLY SEQRES 15 A 186 ASP LEU VAL ASP SEQRES 1 B 186 MET PRO GLU ILE THR GLU SER GLU ARG ALA TYR HIS LEU SEQRES 2 B 186 ARG LYS MET LYS THR ARG MET GLN ARG VAL ASP VAL THR SEQRES 3 B 186 GLY ASP GLY PHE ILE SER ARG GLU ASP TYR GLU LEU ILE SEQRES 4 B 186 ALA VAL ARG ILE ALA LYS ILE ALA LYS LEU SER ALA GLU SEQRES 5 B 186 LYS ALA GLU GLU THR ARG GLN GLU PHE LEU ARG VAL ALA SEQRES 6 B 186 ASP GLN LEU GLY LEU ALA PRO GLY VAL ARG ILE SER VAL SEQRES 7 B 186 GLU GLU ALA ALA VAL ASN ALA THR ASP SER LEU LEU LYS SEQRES 8 B 186 MET LYS GLY GLU GLU LYS ALA MET ALA VAL ILE GLN SER SEQRES 9 B 186 LEU ILE MET TYR ASP CYS ILE ASP THR ASP LYS ASP GLY SEQRES 10 B 186 TYR VAL SER LEU PRO GLU PHE LYS ALA PHE LEU GLN ALA SEQRES 11 B 186 VAL GLY PRO ASP LEU THR ASP ASP LYS ALA ILE THR CYS SEQRES 12 B 186 PHE ASN THR LEU ASP PHE ASN LYS ASN GLY GLN ILE SER SEQRES 13 B 186 ARG ASP GLU PHE LEU VAL THR VAL ASN ASP PHE LEU PHE SEQRES 14 B 186 GLY LEU GLU GLU THR ALA LEU ALA ASN ALA PHE TYR GLY SEQRES 15 B 186 ASP LEU VAL ASP HET CA A 201 1 HET CA A 202 1 HET CA A 203 1 HET CA B 301 1 HET CA B 302 1 HET CA B 303 1 HETNAM CA CALCIUM ION FORMUL 3 CA 6(CA 2+) FORMUL 9 HOH *300(H2 O) HELIX 1 1 THR A 5 ASP A 24 1 20 HELIX 2 2 SER A 32 ALA A 47 1 16 HELIX 3 3 SER A 50 LEU A 68 1 19 HELIX 4 4 VAL A 78 LEU A 90 1 13 HELIX 5 5 LYS A 93 ASP A 112 1 20 HELIX 6 6 SER A 120 GLY A 132 1 13 HELIX 7 7 THR A 136 ASP A 148 1 13 HELIX 8 8 SER A 156 GLY A 170 1 15 HELIX 9 9 THR A 174 GLY A 182 1 9 HELIX 10 10 THR B 5 ARG B 14 1 10 HELIX 11 11 LYS B 15 ASP B 24 1 10 HELIX 12 12 SER B 32 ALA B 47 1 16 HELIX 13 13 SER B 50 LEU B 68 1 19 HELIX 14 14 VAL B 78 LEU B 90 1 13 HELIX 15 15 LYS B 93 SER B 104 1 12 HELIX 16 16 SER B 104 ASP B 112 1 9 HELIX 17 17 LEU B 121 GLY B 132 1 12 HELIX 18 18 THR B 136 ASP B 148 1 13 HELIX 19 19 SER B 156 GLY B 170 1 15 HELIX 20 20 ALA B 175 ALA B 179 5 5 SHEET 1 A 2 PHE A 30 ILE A 31 0 SHEET 2 A 2 ILE A 76 SER A 77 -1 O ILE A 76 N ILE A 31 SHEET 1 B 2 PHE B 30 ILE B 31 0 SHEET 2 B 2 ILE B 76 SER B 77 -1 O ILE B 76 N ILE B 31 SHEET 1 C 2 VAL B 119 SER B 120 0 SHEET 2 C 2 GLN B 154 ILE B 155 -1 O ILE B 155 N VAL B 119 LINK OD1 ASP A 24 CA CA A 202 1555 1555 2.36 LINK OG1 THR A 26 CA CA A 202 1555 1555 2.42 LINK OD1 ASP A 28 CA CA A 202 1555 1555 2.43 LINK O PHE A 30 CA CA A 202 1555 1555 2.30 LINK OD1 ASP A 35 CA CA A 202 1555 1555 2.47 LINK OD2 ASP A 35 CA CA A 202 1555 1555 2.46 LINK OD1 ASP A 112 CA CA A 203 1555 1555 2.19 LINK OD1 ASP A 114 CA CA A 203 1555 1555 2.46 LINK OD1 ASP A 116 CA CA A 203 1555 1555 2.49 LINK O TYR A 118 CA CA A 203 1555 1555 2.26 LINK OE2 GLU A 123 CA CA A 203 1555 1555 2.49 LINK OE1 GLU A 123 CA CA A 203 1555 1555 2.36 LINK OD1 ASP A 148 CA CA A 201 1555 1555 2.36 LINK OD1 ASN A 150 CA CA A 201 1555 1555 2.28 LINK OD1 ASN A 152 CA CA A 201 1555 1555 2.44 LINK O GLN A 154 CA CA A 201 1555 1555 2.32 LINK OE1 GLU A 159 CA CA A 201 1555 1555 2.54 LINK OE2 GLU A 159 CA CA A 201 1555 1555 2.62 LINK CA CA A 201 O HOH A 466 1555 1555 2.39 LINK CA CA A 202 O HOH A 439 1555 1555 2.39 LINK CA CA A 203 O HOH A 639 1555 1555 2.71 LINK OD1 ASP B 24 CA CA B 302 1555 1555 2.40 LINK OG1 THR B 26 CA CA B 302 1555 1555 2.53 LINK OD1 ASP B 28 CA CA B 302 1555 1555 2.43 LINK O PHE B 30 CA CA B 302 1555 1555 2.27 LINK OD1 ASP B 35 CA CA B 302 1555 1555 2.44 LINK OD2 ASP B 35 CA CA B 302 1555 1555 2.54 LINK OD1 ASP B 112 CA CA B 303 1555 1555 2.22 LINK OD1 ASP B 114 CA CA B 303 1555 1555 2.50 LINK OD2 ASP B 116 CA CA B 303 1555 1555 2.47 LINK O TYR B 118 CA CA B 303 1555 1555 2.26 LINK OE1 GLU B 123 CA CA B 303 1555 1555 2.57 LINK OE2 GLU B 123 CA CA B 303 1555 1555 2.44 LINK OD2 ASP B 148 CA CA B 301 1555 1555 2.30 LINK OD1 ASN B 150 CA CA B 301 1555 1555 2.34 LINK OD1 ASN B 152 CA CA B 301 1555 1555 2.49 LINK O GLN B 154 CA CA B 301 1555 1555 2.30 LINK OE1 GLU B 159 CA CA B 301 1555 1555 2.51 LINK OE2 GLU B 159 CA CA B 301 1555 1555 2.51 LINK CA CA B 301 O HOH B 616 1555 1555 2.46 LINK CA CA B 302 O HOH B 449 1555 1555 2.37 SITE 1 AC1 6 ASP A 148 ASN A 150 ASN A 152 GLN A 154 SITE 2 AC1 6 GLU A 159 HOH A 466 SITE 1 AC2 6 ASP A 24 THR A 26 ASP A 28 PHE A 30 SITE 2 AC2 6 ASP A 35 HOH A 439 SITE 1 AC3 6 ASP A 112 ASP A 114 ASP A 116 TYR A 118 SITE 2 AC3 6 GLU A 123 HOH A 639 SITE 1 AC4 6 ASP B 148 ASN B 150 ASN B 152 GLN B 154 SITE 2 AC4 6 GLU B 159 HOH B 616 SITE 1 AC5 6 ASP B 24 THR B 26 ASP B 28 PHE B 30 SITE 2 AC5 6 ASP B 35 HOH B 449 SITE 1 AC6 5 ASP B 112 ASP B 114 ASP B 116 TYR B 118 SITE 2 AC6 5 GLU B 123 CRYST1 78.414 78.414 125.001 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012753 0.007363 0.000000 0.00000 SCALE2 0.000000 0.014726 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008000 0.00000