HEADER FLAVOPROTEIN 18-JUL-06 2HQ9 TITLE CRYSTAL STRUCTURE OF A FAD-BINDING PROTEIN (MLL6688) FROM TITLE 2 MESORHIZOBIUM LOTI AT 1.95 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: MLL6688 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MESORHIZOBIUM LOTI; SOURCE 3 ORGANISM_TAXID: 381; SOURCE 4 GENE: NP_107146.1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 25-JAN-23 2HQ9 1 REMARK SEQADV LINK REVDAT 5 18-OCT-17 2HQ9 1 REMARK REVDAT 4 13-JUL-11 2HQ9 1 VERSN REVDAT 3 23-MAR-11 2HQ9 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 2HQ9 1 VERSN REVDAT 1 29-AUG-06 2HQ9 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN (NP_107146.1) FROM JRNL TITL 2 MESORHIZOBIUM LOTI AT 1.95 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 22557 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1162 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1537 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.52 REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE SET COUNT : 107 REMARK 3 BIN FREE R VALUE : 0.3330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2164 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 111 REMARK 3 SOLVENT ATOMS : 178 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 23.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.67000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.68000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.167 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.165 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.114 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.387 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2369 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2089 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3240 ; 1.645 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4831 ; 0.834 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 277 ; 6.843 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 102 ;34.224 ;22.353 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 365 ;13.270 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;11.817 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 340 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2555 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 488 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 445 ; 0.185 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2142 ; 0.195 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1126 ; 0.186 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1391 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 135 ; 0.163 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 7 ; 0.233 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 68 ; 0.178 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.162 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1391 ; 1.018 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 561 ; 0.255 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2195 ; 1.707 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1215 ; 2.305 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1041 ; 3.621 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 148 REMARK 3 ORIGIN FOR THE GROUP (A): 37.7420 36.9700 16.1400 REMARK 3 T TENSOR REMARK 3 T11: -0.0607 T22: -0.1091 REMARK 3 T33: -0.0827 T12: 0.0020 REMARK 3 T13: 0.0070 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.8431 L22: 0.7562 REMARK 3 L33: 3.2042 L12: -0.6252 REMARK 3 L13: -1.1759 L23: 1.2072 REMARK 3 S TENSOR REMARK 3 S11: -0.1255 S12: 0.0480 S13: -0.0125 REMARK 3 S21: 0.0226 S22: 0.0615 S23: 0.0055 REMARK 3 S31: 0.3526 S32: 0.1385 S33: 0.0640 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 147 REMARK 3 ORIGIN FOR THE GROUP (A): 29.2780 52.8370 27.6270 REMARK 3 T TENSOR REMARK 3 T11: -0.0979 T22: -0.1018 REMARK 3 T33: -0.0916 T12: -0.0074 REMARK 3 T13: -0.0040 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 1.4917 L22: 1.3818 REMARK 3 L33: 3.3368 L12: -0.6693 REMARK 3 L13: -1.2244 L23: 0.9515 REMARK 3 S TENSOR REMARK 3 S11: 0.1161 S12: 0.1178 S13: 0.0942 REMARK 3 S21: -0.1170 S22: 0.0080 S23: 0.0629 REMARK 3 S31: -0.2776 S32: -0.0878 S33: -0.1241 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION REMARK 3 DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE REMARK 3 MSE REMARK 3 RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING REMARK 3 POWER DUE TO PARTIAL S-MET INCORPORATION. REMARK 3 3. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 4. RESIDUES A115-128 AND B119-127 ARE DISORDERED AND WERE NOT REMARK 3 MODELED. REMARK 3 5. FAD MODELED BASED ON PROPOSED FUNCTION AND DENSITY. REMARK 3 6. ETHYLENE GLYCOL AND CHLORIDE MODELED BASED ON CRYSTALLIAZTION REMARK 3 CONDITIONS. REMARK 3 7. THERE IS UNMODELED DENSITY NEAR A135, B42 AND B135. REMARK 4 REMARK 4 2HQ9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1000038633. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918370, 0.979197 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22592 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 29.488 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : 0.09300 REMARK 200 FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.64800 REMARK 200 R SYM FOR SHELL (I) : 0.64800 REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0M (NH4)2SO4, 0.1M TRIS PH 8.5, REMARK 280 VAPOR DIFFUSION,SITTING DROP,NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.92600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.31300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.44750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.31300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.92600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.44750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 115 REMARK 465 GLY A 116 REMARK 465 ALA A 117 REMARK 465 LEU A 118 REMARK 465 LYS A 119 REMARK 465 PRO A 120 REMARK 465 VAL A 121 REMARK 465 THR A 122 REMARK 465 PRO A 123 REMARK 465 PRO A 124 REMARK 465 THR A 125 REMARK 465 ALA A 126 REMARK 465 ASP A 127 REMARK 465 SER A 128 REMARK 465 GLY B 0 REMARK 465 LYS B 119 REMARK 465 PRO B 120 REMARK 465 VAL B 121 REMARK 465 THR B 122 REMARK 465 PRO B 123 REMARK 465 PRO B 124 REMARK 465 THR B 125 REMARK 465 ALA B 126 REMARK 465 ASP B 127 REMARK 465 GLU B 148 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 19 NE CZ NH1 NH2 REMARK 470 ASP A 111 CG OD1 OD2 REMARK 470 GLU A 114 CG CD OE1 OE2 REMARK 470 LEU B 2 CG CD1 CD2 REMARK 470 LYS B 13 CD CE NZ REMARK 470 ARG B 19 CD NE CZ NH1 NH2 REMARK 470 ARG B 75 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 78 OE1 GLU B 145 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 99 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 42 -113.39 54.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 149 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 367212 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV REMARK 999 PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE REMARK 999 TARGET SEQUENCE. DBREF 2HQ9 A 1 148 UNP Q988L5 Q988L5_RHILO 1 148 DBREF 2HQ9 B 1 148 UNP Q988L5 Q988L5_RHILO 1 148 SEQADV 2HQ9 GLY A 0 UNP Q988L5 EXPRESSION TAG SEQADV 2HQ9 MSE A 1 UNP Q988L5 MET 1 MODIFIED RESIDUE SEQADV 2HQ9 MSE A 50 UNP Q988L5 MET 50 MODIFIED RESIDUE SEQADV 2HQ9 MSE A 58 UNP Q988L5 MET 58 MODIFIED RESIDUE SEQADV 2HQ9 GLY B 0 UNP Q988L5 EXPRESSION TAG SEQADV 2HQ9 MSE B 1 UNP Q988L5 MET 1 MODIFIED RESIDUE SEQADV 2HQ9 MSE B 50 UNP Q988L5 MET 50 MODIFIED RESIDUE SEQADV 2HQ9 MSE B 58 UNP Q988L5 MET 58 MODIFIED RESIDUE SEQRES 1 A 149 GLY MSE LEU VAL ARG THR LEU SER ALA LEU GLU CYS THR SEQRES 2 A 149 LYS VAL LEU THR ALA ASN ARG VAL GLY ARG LEU ALA CYS SEQRES 3 A 149 ALA LYS ASP GLY GLN PRO TYR VAL VAL PRO LEU TYR TYR SEQRES 4 A 149 ALA TYR SER ASP ALA HIS LEU TYR ALA PHE SER MSE PRO SEQRES 5 A 149 GLY LYS LYS ILE GLU TRP MSE ARG ALA ASN PRO ARG VAL SEQRES 6 A 149 SER VAL GLN VAL ASP GLU HIS GLY GLN GLY ARG GLY TRP SEQRES 7 A 149 LYS SER VAL VAL VAL ASP GLY ARG TYR GLU GLU LEU PRO SEQRES 8 A 149 ASP LEU ILE GLY HIS LYS LEU GLN ARG ASP HIS ALA TRP SEQRES 9 A 149 SER VAL LEU SER LYS HIS THR ASP TRP TRP GLU PRO GLY SEQRES 10 A 149 ALA LEU LYS PRO VAL THR PRO PRO THR ALA ASP SER ALA SEQRES 11 A 149 PRO HIS VAL PHE PHE ARG ILE LEU ILE GLU GLN VAL SER SEQRES 12 A 149 GLY ARG GLU ALA SER GLU SEQRES 1 B 149 GLY MSE LEU VAL ARG THR LEU SER ALA LEU GLU CYS THR SEQRES 2 B 149 LYS VAL LEU THR ALA ASN ARG VAL GLY ARG LEU ALA CYS SEQRES 3 B 149 ALA LYS ASP GLY GLN PRO TYR VAL VAL PRO LEU TYR TYR SEQRES 4 B 149 ALA TYR SER ASP ALA HIS LEU TYR ALA PHE SER MSE PRO SEQRES 5 B 149 GLY LYS LYS ILE GLU TRP MSE ARG ALA ASN PRO ARG VAL SEQRES 6 B 149 SER VAL GLN VAL ASP GLU HIS GLY GLN GLY ARG GLY TRP SEQRES 7 B 149 LYS SER VAL VAL VAL ASP GLY ARG TYR GLU GLU LEU PRO SEQRES 8 B 149 ASP LEU ILE GLY HIS LYS LEU GLN ARG ASP HIS ALA TRP SEQRES 9 B 149 SER VAL LEU SER LYS HIS THR ASP TRP TRP GLU PRO GLY SEQRES 10 B 149 ALA LEU LYS PRO VAL THR PRO PRO THR ALA ASP SER ALA SEQRES 11 B 149 PRO HIS VAL PHE PHE ARG ILE LEU ILE GLU GLN VAL SER SEQRES 12 B 149 GLY ARG GLU ALA SER GLU MODRES 2HQ9 MSE A 1 MET SELENOMETHIONINE MODRES 2HQ9 MSE A 50 MET SELENOMETHIONINE MODRES 2HQ9 MSE A 58 MET SELENOMETHIONINE MODRES 2HQ9 MSE B 1 MET SELENOMETHIONINE MODRES 2HQ9 MSE B 50 MET SELENOMETHIONINE MODRES 2HQ9 MSE B 58 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 50 8 HET MSE A 58 8 HET MSE B 1 8 HET MSE B 50 8 HET MSE B 58 8 HET CL A 149 1 HET FAD A 200 53 HET EDO A 201 4 HET FAD B 200 53 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 CL CL 1- FORMUL 4 FAD 2(C27 H33 N9 O15 P2) FORMUL 5 EDO C2 H6 O2 FORMUL 7 HOH *178(H2 O) HELIX 1 1 SER A 7 ASN A 18 1 12 HELIX 2 2 GLY A 52 ASN A 61 1 10 HELIX 3 3 LEU A 92 GLY A 94 5 3 HELIX 4 4 HIS A 95 GLU A 114 1 20 HELIX 5 5 SER B 7 ASN B 18 1 12 HELIX 6 6 GLY B 52 ASN B 61 1 10 HELIX 7 7 LEU B 92 GLY B 94 5 3 HELIX 8 8 HIS B 95 ASP B 111 1 17 SHEET 1 A 6 LEU A 2 THR A 5 0 SHEET 2 A 6 VAL A 132 SER A 147 -1 O SER A 147 N LEU A 2 SHEET 3 A 6 TRP A 77 GLU A 88 -1 N SER A 79 O ARG A 144 SHEET 4 A 6 ARG A 63 HIS A 71 -1 N VAL A 68 O VAL A 80 SHEET 5 A 6 VAL A 20 LYS A 27 -1 N ALA A 24 O SER A 65 SHEET 6 A 6 GLN A 30 TYR A 37 -1 O VAL A 34 N LEU A 23 SHEET 1 B 4 LEU A 2 THR A 5 0 SHEET 2 B 4 VAL A 132 SER A 147 -1 O SER A 147 N LEU A 2 SHEET 3 B 4 HIS A 44 SER A 49 -1 N SER A 49 O VAL A 132 SHEET 4 B 4 ALA A 39 SER A 41 -1 N SER A 41 O HIS A 44 SHEET 1 C 6 VAL B 3 THR B 5 0 SHEET 2 C 6 VAL B 132 ALA B 146 -1 O GLU B 145 N ARG B 4 SHEET 3 C 6 TRP B 77 GLU B 88 -1 N ASP B 83 O GLN B 140 SHEET 4 C 6 ARG B 63 HIS B 71 -1 N VAL B 66 O VAL B 82 SHEET 5 C 6 VAL B 20 LYS B 27 -1 N ALA B 24 O SER B 65 SHEET 6 C 6 GLN B 30 TYR B 37 -1 O VAL B 34 N LEU B 23 SHEET 1 D 4 VAL B 3 THR B 5 0 SHEET 2 D 4 VAL B 132 ALA B 146 -1 O GLU B 145 N ARG B 4 SHEET 3 D 4 HIS B 44 SER B 49 -1 N SER B 49 O VAL B 132 SHEET 4 D 4 ALA B 39 SER B 41 -1 N ALA B 39 O TYR B 46 LINK C GLY A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N LEU A 2 1555 1555 1.32 LINK C SER A 49 N MSE A 50 1555 1555 1.30 LINK C MSE A 50 N PRO A 51 1555 1555 1.33 LINK C TRP A 57 N MSE A 58 1555 1555 1.32 LINK C MSE A 58 N ARG A 59 1555 1555 1.33 LINK C MSE B 1 N LEU B 2 1555 1555 1.33 LINK C SER B 49 N MSE B 50 1555 1555 1.32 LINK C MSE B 50 N PRO B 51 1555 1555 1.34 LINK C TRP B 57 N MSE B 58 1555 1555 1.33 LINK C MSE B 58 N ARG B 59 1555 1555 1.34 SITE 1 AC1 1 HIS A 71 SITE 1 AC2 23 TYR A 32 PRO A 35 LEU A 36 TYR A 37 SITE 2 AC2 23 PHE A 48 SER A 49 GLY A 52 LYS A 53 SITE 3 AC2 23 LYS A 54 TRP A 113 HOH A 202 HOH A 204 SITE 4 AC2 23 HOH A 206 HOH A 221 HOH A 274 TRP B 77 SITE 5 AC2 23 SER B 79 VAL B 80 VAL B 81 SER B 142 SITE 6 AC2 23 ARG B 144 HOH B 219 HOH B 266 SITE 1 AC3 26 TRP A 77 SER A 79 VAL A 80 VAL A 81 SITE 2 AC3 26 SER A 142 GLY A 143 ARG A 144 TYR B 32 SITE 3 AC3 26 VAL B 34 PRO B 35 LEU B 36 TYR B 37 SITE 4 AC3 26 PHE B 48 SER B 49 GLY B 52 LYS B 53 SITE 5 AC3 26 LYS B 54 TRP B 113 HOH B 206 HOH B 209 SITE 6 AC3 26 HOH B 210 HOH B 221 HOH B 223 HOH B 226 SITE 7 AC3 26 HOH B 248 HOH B 271 SITE 1 AC4 4 ARG A 22 HOH A 264 HOH A 275 ARG B 22 CRYST1 47.852 74.895 84.626 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020898 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013352 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011817 0.00000