HEADER SIGNALING PROTEIN 19-JUL-06 2HQN TITLE STRUCTURE OF A ATYPICAL ORPHAN RESPONSE REGULATOR PROTEIN REVEALED A TITLE 2 NEW PHOSPHORYLATION-INDEPENDENT REGULATORY MECHANISM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN, RESIDUES 119-223; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 85963; SOURCE 4 STRAIN: J99; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHOSPORYLATION-INDEPENDENT RESPONSE REGULATOR, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR E.HONG,W.LEE REVDAT 5 01-MAY-24 2HQN 1 REMARK SEQADV REVDAT 4 13-JUL-11 2HQN 1 VERSN REVDAT 3 24-FEB-09 2HQN 1 VERSN REVDAT 2 24-JUL-07 2HQN 1 JRNL REVDAT 1 08-MAY-07 2HQN 0 JRNL AUTH E.HONG,H.M.LEE,H.KO,D.-U.KIM,B.-Y.JEON,J.JUNG,J.SHIN, JRNL AUTH 2 S.-A.LEE,Y.KIM,Y.H.JEON,C.CHEONG,H.-S.CHO,W.LEE JRNL TITL STRUCTURE OF AN ATYPICAL ORPHAN RESPONSE REGULATOR PROTEIN JRNL TITL 2 SUPPORTS A NEW PHOSPHORYLATION-INDEPENDENT REGULATORY JRNL TITL 3 MECHANISM JRNL REF J.BIOL.CHEM. V. 282 20667 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17491010 JRNL DOI 10.1074/JBC.M609104200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1, CYANA 2.1 REMARK 3 AUTHORS : GUENTERT, P. (CYANA), GUENTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2HQN COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1000038646. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7.23 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 50MM PHOSPHATE BUFFER; 2MM DTT; REMARK 210 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.4, SPARKY 3.112 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING 3D HETERONUCLEAR REMARK 210 TECHNIQUES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 133 47.91 36.74 REMARK 500 1 LYS A 145 55.86 -115.04 REMARK 500 1 ASP A 160 55.81 29.09 REMARK 500 1 GLN A 161 -163.20 171.49 REMARK 500 1 TRP A 173 51.28 31.13 REMARK 500 1 PRO A 176 -164.50 -69.70 REMARK 500 1 THR A 180 154.39 62.15 REMARK 500 1 MET A 195 -68.78 -143.20 REMARK 500 1 ARG A 209 -75.03 -73.37 REMARK 500 1 PRO A 217 -161.28 -69.75 REMARK 500 1 LYS A 218 -61.20 -164.71 REMARK 500 2 GLU A 133 50.36 36.87 REMARK 500 2 LYS A 145 54.52 -115.56 REMARK 500 2 ASP A 160 54.85 32.21 REMARK 500 2 GLN A 161 -161.02 170.78 REMARK 500 2 TRP A 173 53.51 29.75 REMARK 500 2 PRO A 176 -163.30 -69.75 REMARK 500 2 THR A 180 155.39 63.36 REMARK 500 2 MET A 195 -66.48 -147.77 REMARK 500 2 PRO A 217 -161.50 -69.73 REMARK 500 2 LYS A 218 -66.05 -139.77 REMARK 500 3 GLU A 133 55.81 37.07 REMARK 500 3 LYS A 145 54.97 -114.23 REMARK 500 3 ASP A 160 54.83 30.85 REMARK 500 3 GLN A 161 -164.34 172.84 REMARK 500 3 TRP A 173 52.05 30.69 REMARK 500 3 PRO A 176 -164.61 -69.82 REMARK 500 3 THR A 180 154.13 62.02 REMARK 500 3 MET A 195 -64.64 -147.34 REMARK 500 3 ARG A 210 -60.93 -99.96 REMARK 500 3 PRO A 217 -159.39 -69.69 REMARK 500 3 LYS A 218 -58.15 -168.12 REMARK 500 4 GLU A 133 50.87 36.67 REMARK 500 4 LYS A 145 54.43 -113.71 REMARK 500 4 ASP A 160 55.73 29.78 REMARK 500 4 GLN A 161 -163.55 172.38 REMARK 500 4 TRP A 173 55.16 28.99 REMARK 500 4 PRO A 176 -163.65 -69.85 REMARK 500 4 THR A 180 157.13 62.63 REMARK 500 4 MET A 195 -64.23 -148.96 REMARK 500 4 ARG A 210 -60.45 -98.83 REMARK 500 4 PRO A 217 -161.28 -69.72 REMARK 500 4 LYS A 218 -61.14 -164.68 REMARK 500 5 ASP A 125 15.39 -140.10 REMARK 500 5 LYS A 145 54.22 -119.69 REMARK 500 5 ASP A 160 55.48 25.47 REMARK 500 5 GLN A 161 -166.58 166.39 REMARK 500 5 TRP A 173 53.79 29.70 REMARK 500 5 PRO A 176 -163.69 -69.72 REMARK 500 5 THR A 180 160.85 58.95 REMARK 500 REMARK 500 THIS ENTRY HAS 240 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2HQO RELATED DB: PDB REMARK 900 THE N-TERMINAL DOMAIN OF THE SAME PROTEIN IN DIMER FORM REMARK 900 RELATED ID: 2HQR RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN DIMER FORM DBREF 2HQN A 119 223 UNP Q9ZM42 Q9ZM42_HELPJ 119 223 SEQADV 2HQN GLY A 115 UNP Q9ZM42 CLONING ARTIFACT SEQADV 2HQN SER A 116 UNP Q9ZM42 CLONING ARTIFACT SEQADV 2HQN GLY A 117 UNP Q9ZM42 CLONING ARTIFACT SEQADV 2HQN SER A 118 UNP Q9ZM42 CLONING ARTIFACT SEQRES 1 A 109 GLY SER GLY SER ASN VAL ILE GLU ILE GLY ASP LEU THR SEQRES 2 A 109 ILE SER PRO ASP GLU GLU LYS ILE ILE TYR LYS GLY ARG SEQRES 3 A 109 GLU VAL GLU VAL LYS GLY LYS PRO PHE GLU VAL LEU THR SEQRES 4 A 109 HIS LEU ALA ARG HIS ARG ASP GLN ILE VAL SER LYS GLU SEQRES 5 A 109 GLN LEU LEU ASP ALA ILE TRP GLU GLU PRO GLU MET VAL SEQRES 6 A 109 THR PRO ASN VAL ILE GLU VAL ALA ILE ASN GLN ILE ARG SEQRES 7 A 109 GLN LYS MET ASP LYS PRO LEU GLY ILE SER THR VAL GLU SEQRES 8 A 109 THR VAL ARG ARG ARG GLY TYR ARG PHE CYS TYR PRO LYS SEQRES 9 A 109 PRO ALA CYS GLU GLU HELIX 1 1 PRO A 148 ARG A 159 1 12 HELIX 2 2 LYS A 165 TRP A 173 1 9 HELIX 3 3 PRO A 176 PRO A 181 5 6 HELIX 4 4 ASN A 182 MET A 195 1 14 SHEET 1 A 4 ILE A 121 ILE A 123 0 SHEET 2 A 4 LEU A 126 SER A 129 -1 O LEU A 126 N ILE A 123 SHEET 3 A 4 LYS A 134 TYR A 137 -1 O ILE A 136 N THR A 127 SHEET 4 A 4 ARG A 140 GLU A 143 -1 O VAL A 142 N ILE A 135 SHEET 1 B 3 ILE A 162 SER A 164 0 SHEET 2 B 3 GLY A 211 PHE A 214 -1 O TYR A 212 N VAL A 163 SHEET 3 B 3 VAL A 204 THR A 206 -1 N GLU A 205 O ARG A 213 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1