HEADER SIGNALING PROTEIN 19-JUL-06 2HQO TITLE STRUCTURE OF A ATYPICAL ORPHAN RESPONSE REGULATOR PROTEIN REVEALED A TITLE 2 NEW PHOSPHORYLATION-INDEPENDENT REGULATORY MECHANISM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, RESIDUES 1-119 IN CHAIN A, RESIDUES 301- COMPND 5 419 IN CHAIN B; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 85963; SOURCE 4 STRAIN: J99; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHOSPORYLATION-INDEPENDENT RESPONSE REGULATOR, REGULATORY DOMAIN, KEYWDS 2 SYMMETRIC DIMER, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR E.HONG,W.LEE REVDAT 5 01-MAY-24 2HQO 1 REMARK SEQADV REVDAT 4 13-JUL-11 2HQO 1 VERSN REVDAT 3 24-FEB-09 2HQO 1 VERSN REVDAT 2 24-JUL-07 2HQO 1 JRNL REVDAT 1 08-MAY-07 2HQO 0 JRNL AUTH E.HONG,H.M.LEE,H.KO,D.-U.KIM,B.-Y.JEON,J.JUNG,J.SHIN, JRNL AUTH 2 S.-A.LEE,Y.KIM,Y.H.JEON,C.CHEONG,H.-S.CHO,W.LEE JRNL TITL STRUCTURE OF AN ATYPICAL ORPHAN RESPONSE REGULATOR PROTEIN JRNL TITL 2 SUPPORTS A NEW PHOSPHORYLATION-INDEPENDENT REGULATORY JRNL TITL 3 MECHANISM JRNL REF J.BIOL.CHEM. V. 282 20667 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17491010 JRNL DOI 10.1074/JBC.M609104200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1, CYANA 2.1 REMARK 3 AUTHORS : GUENTERT, P. (CYANA), GUENTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2HQO COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1000038647. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7.23 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20MM HEPES; 100MM KCL; 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.4, SPARKY 3.112 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING 3D HETERONUCLEAR REMARK 210 TECHNIQUES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 LEU A 120 REMARK 465 VAL A 121 REMARK 465 PRO A 122 REMARK 465 ARG A 123 REMARK 465 LEU B 420 REMARK 465 VAL B 421 REMARK 465 PRO B 422 REMARK 465 ARG B 423 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 10 -54.09 -127.46 REMARK 500 1 THR A 30 -168.20 -125.58 REMARK 500 1 GLU A 31 -78.14 -105.07 REMARK 500 1 SER A 51 68.33 -108.90 REMARK 500 1 LYS A 65 -63.84 -100.51 REMARK 500 1 PRO A 78 82.85 -69.86 REMARK 500 1 SER A 101 163.49 177.23 REMARK 500 1 LEU A 113 63.74 -115.80 REMARK 500 1 GLU B 307 119.55 -160.70 REMARK 500 1 ASN B 309 -176.48 -61.72 REMARK 500 1 GLU B 331 -75.40 -109.90 REMARK 500 1 SER B 351 68.92 -106.28 REMARK 500 1 LYS B 365 -65.02 -94.49 REMARK 500 1 PRO B 378 78.77 -69.77 REMARK 500 1 SER B 401 163.59 175.93 REMARK 500 1 ARG B 414 29.76 47.90 REMARK 500 2 GLU A 7 118.17 -163.57 REMARK 500 2 ASN A 9 174.80 -54.92 REMARK 500 2 GLU A 31 -78.19 -110.34 REMARK 500 2 SER A 51 68.82 -117.92 REMARK 500 2 LYS A 65 -68.64 -103.69 REMARK 500 2 PRO A 78 80.70 -69.72 REMARK 500 2 SER A 101 162.65 175.18 REMARK 500 2 ASN B 309 176.30 -59.94 REMARK 500 2 GLU B 331 -75.00 -110.29 REMARK 500 2 SER B 351 70.83 -106.10 REMARK 500 2 LYS B 365 -66.95 -94.13 REMARK 500 2 PRO B 378 78.28 -69.75 REMARK 500 2 SER B 401 157.15 176.87 REMARK 500 3 ASN A 9 -173.98 -59.19 REMARK 500 3 SER A 10 -51.63 -125.68 REMARK 500 3 GLU A 31 -76.67 -111.42 REMARK 500 3 SER A 51 67.87 -110.81 REMARK 500 3 LYS A 65 -69.51 -103.68 REMARK 500 3 PRO A 78 77.60 -69.75 REMARK 500 3 SER A 101 162.29 179.64 REMARK 500 3 ASN B 309 -175.03 -59.15 REMARK 500 3 GLU B 331 -74.76 -110.17 REMARK 500 3 SER B 351 69.62 -102.09 REMARK 500 3 HIS B 366 79.58 -103.82 REMARK 500 3 PRO B 378 75.15 -69.77 REMARK 500 3 SER B 401 160.39 175.39 REMARK 500 3 LEU B 413 53.79 -116.19 REMARK 500 3 TRP B 416 102.43 -55.55 REMARK 500 4 ASN A 9 -169.62 -60.63 REMARK 500 4 SER A 10 -53.88 -129.77 REMARK 500 4 GLU A 31 -71.25 -111.17 REMARK 500 4 SER A 51 68.33 -113.38 REMARK 500 4 LYS A 65 -63.65 -93.48 REMARK 500 4 PRO A 78 71.98 -69.76 REMARK 500 REMARK 500 THIS ENTRY HAS 274 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2HQN RELATED DB: PDB REMARK 900 THE C-TERMINAL DOMAIN OF THE SAME PROTEIN IN MONOMER FORM REMARK 900 RELATED ID: 2HQR RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN DIMER FORM DBREF 2HQO A 1 119 UNP Q9ZM42 Q9ZM42_HELPJ 1 119 DBREF 2HQO B 301 419 UNP Q9ZM42 Q9ZM42_HELPJ 1 119 SEQADV 2HQO LEU A 120 UNP Q9ZM42 CLONING ARTIFACT SEQADV 2HQO VAL A 121 UNP Q9ZM42 CLONING ARTIFACT SEQADV 2HQO PRO A 122 UNP Q9ZM42 CLONING ARTIFACT SEQADV 2HQO ARG A 123 UNP Q9ZM42 CLONING ARTIFACT SEQADV 2HQO LEU B 420 UNP Q9ZM42 CLONING ARTIFACT SEQADV 2HQO VAL B 421 UNP Q9ZM42 CLONING ARTIFACT SEQADV 2HQO PRO B 422 UNP Q9ZM42 CLONING ARTIFACT SEQADV 2HQO ARG B 423 UNP Q9ZM42 CLONING ARTIFACT SEQRES 1 A 123 MET ARG VAL LEU LEU ILE GLU LYS ASN SER VAL LEU GLY SEQRES 2 A 123 GLY GLU ILE GLU LYS GLY LEU ASN VAL LYS GLY PHE MET SEQRES 3 A 123 ALA ASP VAL THR GLU SER LEU GLU ASP GLY GLU TYR LEU SEQRES 4 A 123 MET ASP ILE ARG ASN TYR ASP LEU VAL MET VAL SER ASP SEQRES 5 A 123 LYS ASN ALA LEU SER PHE VAL SER ARG ILE LYS GLU LYS SEQRES 6 A 123 HIS SER SER ILE VAL VAL LEU VAL SER SER ASP ASN PRO SEQRES 7 A 123 THR SER GLU GLU GLU VAL HIS ALA PHE GLU GLN GLY ALA SEQRES 8 A 123 ASP ASP TYR ILE ALA LYS PRO TYR ARG SER ILE LYS ALA SEQRES 9 A 123 LEU VAL ALA ARG ILE GLU ALA ARG LEU ARG PHE TRP GLY SEQRES 10 A 123 SER ASN LEU VAL PRO ARG SEQRES 1 B 123 MET ARG VAL LEU LEU ILE GLU LYS ASN SER VAL LEU GLY SEQRES 2 B 123 GLY GLU ILE GLU LYS GLY LEU ASN VAL LYS GLY PHE MET SEQRES 3 B 123 ALA ASP VAL THR GLU SER LEU GLU ASP GLY GLU TYR LEU SEQRES 4 B 123 MET ASP ILE ARG ASN TYR ASP LEU VAL MET VAL SER ASP SEQRES 5 B 123 LYS ASN ALA LEU SER PHE VAL SER ARG ILE LYS GLU LYS SEQRES 6 B 123 HIS SER SER ILE VAL VAL LEU VAL SER SER ASP ASN PRO SEQRES 7 B 123 THR SER GLU GLU GLU VAL HIS ALA PHE GLU GLN GLY ALA SEQRES 8 B 123 ASP ASP TYR ILE ALA LYS PRO TYR ARG SER ILE LYS ALA SEQRES 9 B 123 LEU VAL ALA ARG ILE GLU ALA ARG LEU ARG PHE TRP GLY SEQRES 10 B 123 SER ASN LEU VAL PRO ARG HELIX 1 1 SER A 10 VAL A 22 1 13 HELIX 2 2 SER A 32 ASP A 41 1 10 HELIX 3 3 ASN A 54 HIS A 66 1 13 HELIX 4 4 THR A 79 GLY A 90 1 12 HELIX 5 5 SER A 101 LEU A 113 1 13 HELIX 6 6 SER B 310 GLY B 324 1 15 HELIX 7 7 SER B 332 ARG B 343 1 12 HELIX 8 8 ASN B 354 HIS B 366 1 13 HELIX 9 9 THR B 379 GLY B 390 1 12 HELIX 10 10 SER B 401 ARG B 414 1 14 SHEET 1 A 5 MET A 26 THR A 30 0 SHEET 2 A 5 ARG A 2 ILE A 6 1 N LEU A 5 O ASP A 28 SHEET 3 A 5 LEU A 47 VAL A 50 1 O MET A 49 N LEU A 4 SHEET 4 A 5 VAL A 70 SER A 75 1 O LEU A 72 N VAL A 48 SHEET 5 A 5 ASP A 93 ALA A 96 1 O ILE A 95 N VAL A 73 SHEET 1 B 5 MET B 326 THR B 330 0 SHEET 2 B 5 ARG B 302 ILE B 306 1 N LEU B 305 O ASP B 328 SHEET 3 B 5 LEU B 347 VAL B 350 1 O MET B 349 N LEU B 304 SHEET 4 B 5 VAL B 370 SER B 375 1 O LEU B 372 N VAL B 348 SHEET 5 B 5 ASP B 393 ALA B 396 1 O ILE B 395 N VAL B 373 CISPEP 1 LYS A 97 PRO A 98 1 -0.07 CISPEP 2 LYS B 397 PRO B 398 1 -0.06 CISPEP 3 LYS A 97 PRO A 98 2 -0.14 CISPEP 4 LYS B 397 PRO B 398 2 -0.03 CISPEP 5 LYS A 97 PRO A 98 3 -0.06 CISPEP 6 LYS B 397 PRO B 398 3 -0.09 CISPEP 7 LYS A 97 PRO A 98 4 -0.07 CISPEP 8 LYS B 397 PRO B 398 4 -0.07 CISPEP 9 LYS A 97 PRO A 98 5 -0.05 CISPEP 10 LYS B 397 PRO B 398 5 -0.09 CISPEP 11 LYS A 97 PRO A 98 6 -0.14 CISPEP 12 LYS B 397 PRO B 398 6 -0.07 CISPEP 13 LYS A 97 PRO A 98 7 -0.11 CISPEP 14 LYS B 397 PRO B 398 7 -0.11 CISPEP 15 LYS A 97 PRO A 98 8 -0.16 CISPEP 16 LYS B 397 PRO B 398 8 -0.12 CISPEP 17 LYS A 97 PRO A 98 9 -0.04 CISPEP 18 LYS B 397 PRO B 398 9 -0.09 CISPEP 19 LYS A 97 PRO A 98 10 -0.07 CISPEP 20 LYS B 397 PRO B 398 10 -0.09 CISPEP 21 LYS A 97 PRO A 98 11 -0.08 CISPEP 22 LYS B 397 PRO B 398 11 -0.04 CISPEP 23 LYS A 97 PRO A 98 12 -0.02 CISPEP 24 LYS B 397 PRO B 398 12 -0.02 CISPEP 25 LYS A 97 PRO A 98 13 -0.06 CISPEP 26 LYS B 397 PRO B 398 13 -0.18 CISPEP 27 LYS A 97 PRO A 98 14 -0.08 CISPEP 28 LYS B 397 PRO B 398 14 -0.01 CISPEP 29 LYS A 97 PRO A 98 15 -0.13 CISPEP 30 LYS B 397 PRO B 398 15 -0.04 CISPEP 31 LYS A 97 PRO A 98 16 -0.10 CISPEP 32 LYS B 397 PRO B 398 16 -0.17 CISPEP 33 LYS A 97 PRO A 98 17 -0.08 CISPEP 34 LYS B 397 PRO B 398 17 -0.12 CISPEP 35 LYS A 97 PRO A 98 18 -0.15 CISPEP 36 LYS B 397 PRO B 398 18 -0.07 CISPEP 37 LYS A 97 PRO A 98 19 -0.14 CISPEP 38 LYS B 397 PRO B 398 19 -0.10 CISPEP 39 LYS A 97 PRO A 98 20 -0.01 CISPEP 40 LYS B 397 PRO B 398 20 -0.07 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1