HEADER LIGASE 20-JUL-06 2HRA TITLE CRYSTAL STRUCTURES OF THE INTERACTING DOMAINS FROM YEAST GLUTAMYL-TRNA TITLE 2 SYNTHETASE AND TRNA AMINOACYLATION AND NUCLEAR EXPORT COFACTOR ARC1P TITLE 3 REVEAL A NOVEL FUNCTION FOR AN OLD FOLD COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMYL-TRNA SYNTHETASE, CYTOPLASMIC; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL HETEROMERISATION DOMAIN, RESIDUES 1-207; COMPND 5 SYNONYM: GLUTAMATE-TRNA LIGASE, GLURS, P85; COMPND 6 EC: 6.1.1.17; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: GUS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3 STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PETM-DERIVATIVE KEYWDS GST-FOLD, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR H.SIMADER,M.HOTHORN,D.SUCK REVDAT 6 14-FEB-24 2HRA 1 REMARK SEQADV REVDAT 5 18-OCT-17 2HRA 1 REMARK REVDAT 4 13-JUL-11 2HRA 1 VERSN REVDAT 3 24-FEB-09 2HRA 1 VERSN REVDAT 2 23-JAN-07 2HRA 1 JRNL REVDAT 1 05-SEP-06 2HRA 0 JRNL AUTH H.SIMADER,M.HOTHORN,D.SUCK JRNL TITL STRUCTURES OF THE INTERACTING DOMAINS FROM YEAST JRNL TITL 2 GLUTAMYL-TRNA SYNTHETASE AND TRNA-AMINOACYLATION AND JRNL TITL 3 NUCLEAR-EXPORT COFACTOR ARC1P REVEAL A NOVEL FUNCTION FOR AN JRNL TITL 4 OLD FOLD. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 62 1510 2006 JRNL REFN ISSN 0907-4449 JRNL PMID 17139087 JRNL DOI 10.1107/S0907444906039850 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.SIMADER,M.HOTHORN,C.KOEHLER,J.BASQUIN,G.SIMOS,D.SUCK REMARK 1 TITL STRUCTURAL BASIS OF YEAST AMINOACYL-TRNA SYNTHETASE COMPLEX REMARK 1 TITL 2 FORMATION REVEALED BY CRYSTAL STRUCTURES OF TWO BINARY REMARK 1 TITL 3 SUB-COMPLEXES REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 80.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : -3.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 35496 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1892 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2580 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 143 REMARK 3 BIN FREE R VALUE : 0.3130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2729 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 271 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.63000 REMARK 3 B22 (A**2) : -1.49000 REMARK 3 B33 (A**2) : -2.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.151 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.149 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.123 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.558 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2773 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1847 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3753 ; 1.469 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4565 ; 0.945 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 356 ; 6.922 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 107 ;35.965 ;25.888 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 504 ;16.230 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;18.840 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 447 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3044 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 506 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 667 ; 0.233 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1853 ; 0.197 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1394 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1430 ; 0.090 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 168 ; 0.200 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.004 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.020 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 35 ; 0.383 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 106 ; 0.286 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.295 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 4 ; 0.469 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1793 ; 0.800 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 720 ; 0.201 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2852 ; 1.348 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1068 ; 2.185 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 901 ; 3.391 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 19 A 198 REMARK 3 ORIGIN FOR THE GROUP (A): 29.4087 67.6817 65.5980 REMARK 3 T TENSOR REMARK 3 T11: -0.0055 T22: -0.0518 REMARK 3 T33: -0.0073 T12: -0.0814 REMARK 3 T13: 0.0202 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 0.6959 L22: 1.3122 REMARK 3 L33: 2.9891 L12: 0.0628 REMARK 3 L13: -0.7825 L23: -0.2206 REMARK 3 S TENSOR REMARK 3 S11: -0.0103 S12: 0.0463 S13: -0.0600 REMARK 3 S21: -0.2143 S22: 0.0247 S23: -0.0912 REMARK 3 S31: -0.0536 S32: 0.0309 S33: -0.0144 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 21 B 193 REMARK 3 ORIGIN FOR THE GROUP (A): 17.6381 40.7731 64.8826 REMARK 3 T TENSOR REMARK 3 T11: -0.0828 T22: -0.0594 REMARK 3 T33: -0.0325 T12: -0.0763 REMARK 3 T13: -0.0105 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 1.4524 L22: 2.1127 REMARK 3 L33: 3.3248 L12: 0.6241 REMARK 3 L13: -1.0993 L23: 0.0110 REMARK 3 S TENSOR REMARK 3 S11: -0.1363 S12: 0.1283 S13: 0.0694 REMARK 3 S21: -0.2805 S22: 0.1368 S23: -0.0187 REMARK 3 S31: 0.0512 S32: -0.1359 S33: -0.0005 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2HRA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1000038669. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-04; 29-APR-05 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ESRF; SLS REMARK 200 BEAMLINE : ID23-1; X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97925; 0.97912, 0.97934, REMARK 200 0.95372 REMARK 200 MONOCHROMATOR : LN2 COOLED CHANNEL-CARVED REMARK 200 SI(111) MONO-CRYSTAL REMARK 200 MONOCHROMATOR; LN2 COOLED FIXED- REMARK 200 EXIT SI(111) MONOCHROMATOR REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD; MARMOSAIC REMARK 200 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37390 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 80.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.36000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXCD, SHELXD, SOLVE, RESOLVE REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8-1.9 M (NH4)2SO4, 200 MM NAI, PH REMARK 280 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.93250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 83.93250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 25.97950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.55650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 25.97950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.55650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 83.93250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 25.97950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.55650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 83.93250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 25.97950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 53.55650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A MONOMER, TWO OF WHICH ARE REMARK 300 CONTAINED IN THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 HIS A 2 REMARK 465 MET A 3 REMARK 465 THR A 4 REMARK 465 LYS A 5 REMARK 465 LEU A 6 REMARK 465 PHE A 7 REMARK 465 SER A 8 REMARK 465 LYS A 9 REMARK 465 VAL A 10 REMARK 465 LYS A 11 REMARK 465 GLU A 12 REMARK 465 SER A 13 REMARK 465 ILE A 14 REMARK 465 GLU A 15 REMARK 465 GLY A 16 REMARK 465 ILE A 17 REMARK 465 LYS A 18 REMARK 465 LYS A 199 REMARK 465 LYS A 200 REMARK 465 LYS A 201 REMARK 465 GLU A 202 REMARK 465 THR A 203 REMARK 465 HIS A 204 REMARK 465 LYS A 205 REMARK 465 ALA A 206 REMARK 465 ASN A 207 REMARK 465 PHE A 208 REMARK 465 GLU A 209 REMARK 465 GLY B 1 REMARK 465 HIS B 2 REMARK 465 MET B 3 REMARK 465 THR B 4 REMARK 465 LYS B 5 REMARK 465 LEU B 6 REMARK 465 PHE B 7 REMARK 465 SER B 8 REMARK 465 LYS B 9 REMARK 465 VAL B 10 REMARK 465 LYS B 11 REMARK 465 GLU B 12 REMARK 465 SER B 13 REMARK 465 ILE B 14 REMARK 465 GLU B 15 REMARK 465 SER B 194 REMARK 465 ALA B 195 REMARK 465 ASN B 196 REMARK 465 VAL B 197 REMARK 465 GLY B 198 REMARK 465 LYS B 199 REMARK 465 LYS B 200 REMARK 465 LYS B 201 REMARK 465 GLU B 202 REMARK 465 THR B 203 REMARK 465 HIS B 204 REMARK 465 LYS B 205 REMARK 465 ALA B 206 REMARK 465 ASN B 207 REMARK 465 PHE B 208 REMARK 465 GLU B 209 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE B 17 CG1 CG2 CD1 REMARK 470 MET B 19 CG SD CE REMARK 470 LYS B 59 CG CD CE NZ REMARK 470 LYS B 193 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 92 O HOH A 588 1.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 47 76.38 -155.57 REMARK 500 LYS A 60 44.04 -96.49 REMARK 500 ASP A 67 -110.61 56.86 REMARK 500 PHE A 81 52.20 -105.45 REMARK 500 ILE B 17 -135.07 129.96 REMARK 500 MET B 19 114.26 49.76 REMARK 500 ALA B 47 77.09 -157.55 REMARK 500 LYS B 60 51.75 -96.60 REMARK 500 ASP B 67 -118.43 48.70 REMARK 500 PHE B 81 50.41 -99.40 REMARK 500 ASN B 87 141.88 131.53 REMARK 500 ASP B 89 123.18 -35.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE B 17 LYS B 18 -142.82 REMARK 500 LYS B 18 MET B 19 59.92 REMARK 500 ASN B 87 GLY B 88 68.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 417 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 418 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 419 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 420 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 421 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 422 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 423 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 424 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 426 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 428 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 430 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 431 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 432 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 433 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 436 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 438 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 439 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 440 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 441 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 444 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2HQT RELATED DB: PDB DBREF 2HRA A 3 209 UNP P46655 SYEC_YEAST 1 207 DBREF 2HRA B 3 209 UNP P46655 SYEC_YEAST 1 207 SEQADV 2HRA GLY A 1 UNP P46655 CLONING ARTIFACT SEQADV 2HRA HIS A 2 UNP P46655 CLONING ARTIFACT SEQADV 2HRA GLY B 1 UNP P46655 CLONING ARTIFACT SEQADV 2HRA HIS B 2 UNP P46655 CLONING ARTIFACT SEQRES 1 A 209 GLY HIS MET THR LYS LEU PHE SER LYS VAL LYS GLU SER SEQRES 2 A 209 ILE GLU GLY ILE LYS MET PRO SER THR LEU THR ILE ASN SEQRES 3 A 209 GLY LYS ALA PRO ILE VAL ALA TYR ALA GLU LEU ILE ALA SEQRES 4 A 209 ALA ARG ILE VAL ASN ALA LEU ALA PRO ASN SER ILE ALA SEQRES 5 A 209 ILE LYS LEU VAL ASP ASP LYS LYS ALA PRO ALA ALA LYS SEQRES 6 A 209 LEU ASP ASP ALA THR GLU ASP VAL PHE ASN LYS ILE THR SEQRES 7 A 209 SER LYS PHE ALA ALA ILE PHE ASP ASN GLY ASP LYS GLU SEQRES 8 A 209 GLN VAL ALA LYS TRP VAL ASN LEU ALA GLN LYS GLU LEU SEQRES 9 A 209 VAL ILE LYS ASN PHE ALA LYS LEU SER GLN SER LEU GLU SEQRES 10 A 209 THR LEU ASP SER GLN LEU ASN LEU ARG THR PHE ILE LEU SEQRES 11 A 209 GLY GLY LEU LYS TYR SER ALA ALA ASP VAL ALA CYS TRP SEQRES 12 A 209 GLY ALA LEU ARG SER ASN GLY MET CYS GLY SER ILE ILE SEQRES 13 A 209 LYS ASN LYS VAL ASP VAL ASN VAL SER ARG TRP TYR THR SEQRES 14 A 209 LEU LEU GLU MET ASP PRO ILE PHE GLY GLU ALA HIS ASP SEQRES 15 A 209 PHE LEU SER LYS SER LEU LEU GLU LEU LYS LYS SER ALA SEQRES 16 A 209 ASN VAL GLY LYS LYS LYS GLU THR HIS LYS ALA ASN PHE SEQRES 17 A 209 GLU SEQRES 1 B 209 GLY HIS MET THR LYS LEU PHE SER LYS VAL LYS GLU SER SEQRES 2 B 209 ILE GLU GLY ILE LYS MET PRO SER THR LEU THR ILE ASN SEQRES 3 B 209 GLY LYS ALA PRO ILE VAL ALA TYR ALA GLU LEU ILE ALA SEQRES 4 B 209 ALA ARG ILE VAL ASN ALA LEU ALA PRO ASN SER ILE ALA SEQRES 5 B 209 ILE LYS LEU VAL ASP ASP LYS LYS ALA PRO ALA ALA LYS SEQRES 6 B 209 LEU ASP ASP ALA THR GLU ASP VAL PHE ASN LYS ILE THR SEQRES 7 B 209 SER LYS PHE ALA ALA ILE PHE ASP ASN GLY ASP LYS GLU SEQRES 8 B 209 GLN VAL ALA LYS TRP VAL ASN LEU ALA GLN LYS GLU LEU SEQRES 9 B 209 VAL ILE LYS ASN PHE ALA LYS LEU SER GLN SER LEU GLU SEQRES 10 B 209 THR LEU ASP SER GLN LEU ASN LEU ARG THR PHE ILE LEU SEQRES 11 B 209 GLY GLY LEU LYS TYR SER ALA ALA ASP VAL ALA CYS TRP SEQRES 12 B 209 GLY ALA LEU ARG SER ASN GLY MET CYS GLY SER ILE ILE SEQRES 13 B 209 LYS ASN LYS VAL ASP VAL ASN VAL SER ARG TRP TYR THR SEQRES 14 B 209 LEU LEU GLU MET ASP PRO ILE PHE GLY GLU ALA HIS ASP SEQRES 15 B 209 PHE LEU SER LYS SER LEU LEU GLU LEU LYS LYS SER ALA SEQRES 16 B 209 ASN VAL GLY LYS LYS LYS GLU THR HIS LYS ALA ASN PHE SEQRES 17 B 209 GLU HET IOD A 401 1 HET IOD A 402 1 HET IOD A 403 1 HET IOD A 406 1 HET IOD A 408 1 HET IOD A 411 1 HET IOD A 412 1 HET IOD A 413 1 HET IOD A 416 1 HET IOD A 418 1 HET IOD A 424 1 HET IOD A 427 1 HET IOD A 428 1 HET IOD A 430 1 HET IOD A 431 1 HET IOD A 433 1 HET IOD A 434 1 HET IOD A 436 1 HET IOD A 442 1 HET IOD A 445 1 HET IOD B 404 1 HET IOD B 405 1 HET IOD B 407 1 HET IOD B 409 1 HET IOD B 410 1 HET IOD B 414 1 HET IOD B 415 1 HET IOD B 417 1 HET IOD B 419 1 HET IOD B 420 1 HET IOD B 421 1 HET IOD B 422 1 HET IOD B 423 1 HET IOD B 426 1 HET IOD B 429 1 HET IOD B 432 1 HET IOD B 435 1 HET IOD B 437 1 HET IOD B 438 1 HET IOD B 439 1 HET IOD B 440 1 HET IOD B 441 1 HET IOD B 443 1 HET IOD B 444 1 HETNAM IOD IODIDE ION FORMUL 3 IOD 44(I 1-) FORMUL 47 HOH *271(H2 O) HELIX 1 1 ALA A 33 ALA A 47 1 15 HELIX 2 2 ASP A 72 PHE A 81 1 10 HELIX 3 3 ASP A 89 GLU A 103 1 15 HELIX 4 4 ASN A 108 LEU A 123 1 16 HELIX 5 5 SER A 136 ASN A 149 1 14 HELIX 6 6 MET A 151 LYS A 159 1 9 HELIX 7 7 ASP A 161 MET A 173 1 13 HELIX 8 8 ASP A 174 GLU A 179 1 6 HELIX 9 9 GLU A 179 ASN A 196 1 18 HELIX 10 10 ALA B 33 ALA B 47 1 15 HELIX 11 11 ASP B 72 PHE B 81 1 10 HELIX 12 12 ASP B 89 GLU B 103 1 15 HELIX 13 13 ASN B 108 LEU B 123 1 16 HELIX 14 14 SER B 136 ASN B 149 1 14 HELIX 15 15 MET B 151 VAL B 160 1 10 HELIX 16 16 ASP B 161 MET B 173 1 13 HELIX 17 17 ASP B 174 GLU B 179 1 6 HELIX 18 18 GLU B 179 LYS B 192 1 14 SHEET 1 A 3 ILE A 51 VAL A 56 0 SHEET 2 A 3 SER A 21 ASN A 26 1 N SER A 21 O ALA A 52 SHEET 3 A 3 ALA A 64 LEU A 66 -1 O LYS A 65 N THR A 24 SHEET 1 B 3 ILE B 51 VAL B 56 0 SHEET 2 B 3 SER B 21 ASN B 26 1 N LEU B 23 O ALA B 52 SHEET 3 B 3 ALA B 64 LEU B 66 -1 O LYS B 65 N THR B 24 SITE 1 AC1 1 PHE A 109 SITE 1 AC2 3 PHE A 85 ASN A 87 ALA A 137 SITE 1 AC3 3 PHE B 85 ALA B 137 IOD B 421 SITE 1 AC4 2 GLU A 117 LYS B 76 SITE 1 AC5 1 LEU B 133 SITE 1 AC6 2 SER A 154 ASN A 158 SITE 1 AC7 1 LYS A 59 SITE 1 AC8 2 ASN B 108 HOH B 478 SITE 1 AC9 2 ASN A 108 ILE B 31 SITE 1 BC1 3 THR A 70 GLU A 71 HOH A 554 SITE 1 BC2 1 ASN B 49 SITE 1 BC3 4 ASN A 44 GLY A 198 HOH A 483 HOH A 563 SITE 1 BC4 3 ASP A 72 LYS B 111 GLN B 114 SITE 1 BC5 1 IOD B 423 SITE 1 BC6 4 PHE B 85 LYS B 90 IOD B 407 HOH B 541 SITE 1 BC7 2 VAL B 32 SER B 148 SITE 1 BC8 1 IOD B 420 SITE 1 BC9 2 LYS A 111 ASP B 72 SITE 1 CC1 2 ASN B 44 HOH B 524 SITE 1 CC2 1 ASN A 49 SITE 1 CC3 2 ARG A 147 HIS A 181 SITE 1 CC4 1 THR A 127 SITE 1 CC5 2 GLU B 103 HOH B 477 SITE 1 CC6 3 ASN A 108 HOH B 476 HOH B 495 SITE 1 CC7 1 ASP A 89 SITE 1 CC8 1 ASP B 57 SITE 1 CC9 1 HOH B 451 SITE 1 DC1 3 LEU A 133 ALA B 83 HOH B 518 SITE 1 DC2 1 MET B 173 SITE 1 DC3 1 HOH B 510 CRYST1 51.959 107.113 167.865 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019246 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009336 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005957 0.00000